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BioLiP
Download all results in tab-seperated text for 809 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a3z:A (1.9) BS01 CU1 ? GO:0005507 ... P0C918 N/A
    2 1a8z:A (2.1) BS01 CU1 ? GO:0005507 ... P0C918 9761859
    3 1aqr:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    4 1aqr:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    5 1aqr:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    6 1aqr:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    7 1aqr:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    8 1aqs:A (-1.00) BS01 CU1 N/A GO:0005507 ... N/A 8566237
    9 1aqs:A (-1.00) BS02 CU1 N/A GO:0005507 ... N/A 8566237
    10 1aqs:A (-1.00) BS03 CU1 N/A GO:0005507 ... N/A 8566237
    11 1aqs:A (-1.00) BS04 CU1 N/A GO:0005507 ... N/A 8566237
    12 1aqs:A (-1.00) BS05 CU1 N/A GO:0005507 ... N/A 8566237
    13 1aqs:A (-1.00) BS06 CU1 N/A GO:0005507 ... N/A 8566237
    14 1aqs:A (-1.00) BS07 CU1 N/A GO:0005507 ... N/A 8566237
    15 1b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    16 1ba9:A (-1.00) BS02 CU1 1.15.1.1 GO:0000302 ... P00441 9718300
    17 1bxa:A (1.3) BS01 CU1 ? GO:0005507 ... P22364 9860825
    18 1dz0:A (1.75) BS01 CU1 ? GO:0005507 ... P56275 10818345
    19 1f56:A (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    20 1f56:B (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    21 1f56:C (2.05) BS01 CU1 ? GO:0005886 ... O82080 11085657
    22 1fd8:A (-1.00) BS01 CU1 ? GO:0005737 ... P38636 11327811
    23 1haw:A (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... O68601 11468394
    24 1jxg:A (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    25 1jxg:B (1.6) BS01 CU1 ? GO:0005507 ... P00299 11679761
    26 1jzg:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 11716717
    27 1k0v:A (-1.00) BS01 CU1 ? GO:0005507 ... O32221 11747441
    28 1kqk:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... O32220 11922674
    29 1kvj:A (-1.00) BS01 CU1 7.2.2.8 GO:0005507 ... Q04656 16211579
    30 1l3n:A (-1.00) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 11952792
    31 1l3n:B (-1.00) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 11952792
    32 1mjg:M (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    33 1mjg:N (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    34 1mjg:O (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    35 1mjg:P (2.2) BS01 CU1 2.3.1.169 GO:0003824 ... P27988 12386327
    36 1n18:A (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    37 1n18:B (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    38 1n18:C (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    39 1n18:D (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    40 1n18:E (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    41 1n18:F (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    42 1n18:G (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    43 1n18:H (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    44 1n18:I (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    45 1n18:J (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    46 1n19:A (1.86) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    47 1n19:B (1.86) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12441104
    48 1of0:A (2.45) BS01 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    49 1of0:A (2.45) BS02 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    50 1of0:A (2.45) BS03 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 N/A
    51 1ptz:A (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    52 1ptz:B (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    53 1pu0:A (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    54 1pu0:B (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    55 1pu0:C (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    56 1pu0:D (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    57 1pu0:E (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    58 1pu0:F (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    59 1pu0:G (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    60 1pu0:H (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    61 1pu0:I (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    62 1pu0:J (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    63 1q05:A (2.2) BS01 CU1 ? GO:0000976 ... P0A9G4 12958362
    64 1q05:B (2.2) BS01 CU1 ? GO:0000976 ... P0A9G4 12958362
    65 1r1c:A (1.9) BS01 CU1 ? GO:0005507 ... P00282 14624538
    66 1r1c:B (1.9) BS02 CU1 ? GO:0005507 ... P00282 14624538
    67 1r1c:C (1.9) BS01 CU1 ? GO:0005507 ... P00282 14624538
    68 1r1c:D (1.9) BS01 CU1 ? GO:0005507 ... P00282 14624538
    69 1rju:V (1.44) BS01 CU1 N/A GO:0005507 ... N/A 15613489
    70 1rju:V (1.44) BS02 CU1 N/A GO:0005507 ... N/A 15613489
    71 1rju:V (1.44) BS03 CU1 N/A GO:0005507 ... N/A 15613489
    72 1rju:V (1.44) BS04 CU1 N/A GO:0005507 ... N/A 15613489
    73 1rju:V (1.44) BS05 CU1 N/A GO:0005507 ... N/A 15613489
    74 1rju:V (1.44) BS06 CU1 N/A GO:0005507 ... N/A 15613489
    75 1rju:V (1.44) BS07 CU1 N/A GO:0005507 ... N/A 15613489
    76 1rju:V (1.44) BS08 CU1 N/A GO:0005507 ... N/A 15613489
    77 1s6u:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... Q04656 15035611
    78 1sf3:A (1.05) BS01 CU1 ? GO:0005507 ... P22364 15260480
    79 1sfh:A (1.05) BS01 CU1 ? GO:0005507 ... P22364 15260480
    80 1sfh:B (1.05) BS01 CU1 ? GO:0005507 ... P22364 15260480
    81 1snr:A (1.31) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    82 1snr:B (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    83 1snr:C (1.31) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 15131305
    84 1tl4:A (-1.00) BS01 CU1 ? GO:0005507 ... O00244 15476398
    85 1u96:A (-1.00) BS01 CU1 ? GO:0005507 ... Q12287 15465825
    86 1ws7:A (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    87 1ws7:B (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    88 1ws7:C (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    89 1ws7:D (1.9) BS01 CU1 ? GO:0009055 ... P80728 15858169
    90 1x9l:A (-1.00) BS01 CU1 ? N/A Q9RT80 15753304
    91 1yjt:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... Q04656 16083905
    92 1yjv:A (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... Q04656 16083905
    93 1ylb:B (-1.00) BS01 CU1 ? GO:0005507 ... P00289 15691836
    94 1yso:A (1.73) BS01 CU1 1.15.1.1 GO:0004784 ... P00445 8652572
    95 1zpu:A (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    96 1zpu:A (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    97 1zpu:A (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    98 1zpu:A (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    99 1zpu:B (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    100 1zpu:B (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    101 1zpu:B (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    102 1zpu:B (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    103 1zpu:C (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    104 1zpu:C (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    105 1zpu:C (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    106 1zpu:C (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    107 1zpu:D (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    108 1zpu:D (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    109 1zpu:D (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    110 1zpu:D (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    111 1zpu:E (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    112 1zpu:E (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    113 1zpu:E (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    114 1zpu:E (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    115 1zpu:F (2.8) BS02 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    116 1zpu:F (2.8) BS03 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    117 1zpu:F (2.8) BS04 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    118 1zpu:F (2.8) BS05 CU1 1.16.3.1
    1.16.3.4    		 GO:0005507 ... P38993 16230618
    119 2ahl:A (1.6) BS01 CU1 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    120 2ahl:A (1.6) BS02 CU1 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    121 2ahl:B (1.6) BS01 CU1 ? GO:0005507 ... Q83WS1 16436386
    122 2aqn:A (1.4) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    123 2aqn:B (1.4) BS02 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    124 2aqn:C (1.4) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    125 2aqp:A (1.3) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    126 2aqp:B (1.3) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    127 2aqq:A (1.65) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    128 2aqq:B (1.65) BS02 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    129 2aqq:C (1.65) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    130 2aqr:A (1.75) BS01 CU1 1.15.1.1 GO:0004784 ... Q59623 N/A
    131 2aqr:B (1.75) BS02 CU1 1.15.1.1 GO:0004784 ... Q59623 N/A
    132 2aqr:C (1.75) BS01 CU1 1.15.1.1 GO:0004784 ... Q59623 N/A
    133 2aqs:A (1.7) BS01 CU1 1.15.1.1 GO:0004784 ... Q59623 N/A
    134 2aqs:B (1.7) BS02 CU1 1.15.1.1 GO:0004784 ... Q59623 N/A
    135 2aqt:A (1.8) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    136 2aqt:B (1.8) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    137 2aqt:C (1.8) BS01 CU1 1.15.1.1 GO:0004784 ... P57005 N/A
    138 2b08:A (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    139 2b08:A (1.9) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    140 2b08:A (1.9) BS03 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    141 2b08:B (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    142 2b08:B (1.9) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    143 2b08:B (1.9) BS03 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    144 2b08:C (1.9) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    145 2b08:C (1.9) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    146 2b08:C (1.9) BS03 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    147 2b3i:A (-1.00) BS01 CU1 1.10.99.1 GO:0005507 ... P50057 10213601
    148 2bhf:A (2.5) BS01 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    149 2bhf:A (2.5) BS02 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    150 2bhf:A (2.5) BS03 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    151 2bhf:A (2.5) BS04 CU1 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    152 2bzc:A (1.79) BS01 CU1 ? GO:0005507 ... Q7SIB8 17367139
    153 2cak:A (1.27) BS01 CU1 ? GO:0005507 ... P0C918 16503647
    154 2cal:A (1.1) BS01 CU1 ? GO:0005507 ... P0C918 16503647
    155 2ccw:A (1.13) BS01 CU1 ? GO:0005507 ... P56275 16786065
    156 2e86:A (1.5) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    157 2e86:B (1.5) BS02 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    158 2e86:C (1.5) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 18358002
    159 2eic:A (2.8) BS01 CU1 1.1.3.9 GO:0005576 ... P0CS93 17385891
    160 2fjs:A (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    161 2fjs:B (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    162 2fjs:C (1.85) BS01 CU1 1.7.2.1 GO:0005507 ... P38501 17227014
    163 2fk2:A (1.65) BS01 CU1 ? GO:0016020 ... P05067 17239395
    164 2ft7:A (1.4) BS01 CU1 ? GO:0005507 ... P00282 16651527
    165 2ft8:A (1.55) BS01 CU1 ? GO:0005507 ... P00282 16651527
    166 2gba:A (0.92) BS01 CU1 ? GO:0005507 ... P22364 16819827
    167 2gba:A (0.92) BS02 CU1 ? GO:0005507 ... P22364 16819827
    168 2gbt:A (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    169 2gbt:B (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    170 2gbv:A (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    171 2gbv:B (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    172 2gbv:C (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    173 2gbv:D (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    174 2gbv:E (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    175 2gbv:F (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    176 2gbv:G (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    177 2gbv:H (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    178 2gbv:I (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    179 2gbv:J (2.0) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 17070542
    180 2ggp:B (-1.00) BS01 CU1 7.2.2.8 GO:0046872 ... P38995 16732294
    181 2gi0:A (1.7) BS01 CU1 ? GO:0005507 ... P00282 16846224
    182 2gi0:B (1.7) BS01 CU1 ? GO:0005507 ... P00282 16846224
    183 2gqm:A (-1.00) BS01 CU1 ? N/A O75880 16735468
    184 2gt6:A (-1.00) BS01 CU1 ? N/A O75880 16735468
    185 2hrf:A (-1.00) BS01 CU1 ? N/A O75880 17182746
    186 2hrn:A (-1.00) BS01 CU1 ? N/A O75880 17182746
    187 2hx8:A (1.6) BS01 CU1 ? GO:0005507 ... P00282 17227035
    188 2hx8:B (1.6) BS01 CU1 ? GO:0005507 ... P00282 17227035
    189 2hx9:A (1.7) BS01 CU1 ? GO:0005507 ... P00282 17227035
    190 2hx9:B (1.7) BS01 CU1 ? GO:0005507 ... P00282 17227035
    191 2hxa:A (2.21) BS01 CU1 ? GO:0005507 ... P00282 17227035
    192 2hxa:B (2.21) BS01 CU1 ? GO:0005507 ... P00282 17227035
    193 2ids:A (1.0) BS01 CU1 ? GO:0005507 ... P22364 17295442
    194 2idu:A (0.95) BS01 CU1 ? GO:0005507 ... P22364 17295442
    195 2jcw:A (1.7) BS01 CU1 1.15.1.1 GO:0004784 ... P00445 10026301
    196 2k4w:A (-1.00) BS01 CU1 1.15.1.1 GO:0004784 ... Q704S6 19006322
    197 2k6z:A (-1.00) BS01 CU1 ? N/A Q5SGY7 18758441
    198 2k70:A (-1.00) BS01 CU1 ? N/A Q5SGY7 18758441
    199 2km0:A (-1.00) BS01 CU1 ? GO:0042597 ... Q58AD3 20192263
    200 2lel:A (-1.00) BS01 CU1 ? GO:0042597 ... Q58AD3 21936507
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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