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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 2vz3:A (1.9) BS03 CU 1.1.3.9 GO:0005576 ... P0CS93 18771294
    1402 2w0q:A (2.48) BS01 CU 1.4.3.21 GO:0005507 ... P46883 19052360
    1403 2w0q:B (2.48) BS01 CU 1.4.3.21 GO:0005507 ... P46883 19052360
    1404 2w0q:B (2.48) BS02 CU 1.4.3.21 GO:0005507 ... P46883 19052360
    1405 2w88:A (2.89) BS01 CU ? GO:0005507 ... Q51883 19834935
    1406 2w88:B (2.89) BS02 CU ? GO:0005507 ... Q51883 19834935
    1407 2w88:C (2.89) BS01 CU ? GO:0005507 ... Q51883 19834935
    1408 2w8c:A (1.8) BS01 CU ? GO:0005507 ... Q51883 19834935
    1409 2w8c:B (1.8) BS01 CU ? GO:0005507 ... Q51883 19834935
    1410 2wko:A (1.97) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1411 2wko:F (1.97) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1412 2wo0:A (2.6) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1413 2wo0:B (2.6) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1414 2wof:A (2.25) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1415 2wof:B (2.25) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1416 2woh:A (2.7) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1417 2woh:B (2.7) BS01 CU 1.4.3.21 GO:0005507 ... P46883 20052994
    1418 2wq8:A (2.19) BS01 CU 1.1.3.9 GO:0005576 ... P0CS93 21526835
    1419 2wsd:A (1.6) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    1420 2wsd:A (1.6) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    1421 2wsd:A (1.6) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    1422 2wsd:A (1.6) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 18307408
    1423 2wyt:A (1.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1424 2wyt:F (1.0) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1425 2wyz:A (1.7) BS02 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1426 2wyz:F (1.7) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1427 2wz0:A (1.72) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1428 2wz0:F (1.72) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1429 2wz5:A (1.5) BS02 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1430 2wz5:F (1.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1431 2wz6:A (1.55) BS02 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1432 2wz6:F (1.55) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20067275
    1433 2x87:A (2.0) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1434 2x87:A (2.0) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1435 2x87:A (2.0) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1436 2x87:A (2.0) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1437 2x88:A (1.8) BS01 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1438 2x88:A (1.8) BS02 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1439 2x88:A (1.8) BS03 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1440 2x88:A (1.8) BS04 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1441 2x88:A (1.8) BS06 CU 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 20822511
    1442 2xjk:A (1.45) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20822138
    1443 2xjn:A (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1444 2xjn:C (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1445 2xjn:D (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1446 2xjn:E (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1447 2xjn:F (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1448 2xjn:G (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1449 2xjn:H (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1450 2xjn:I (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1451 2xjn:J (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1452 2xjn:K (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1453 2xjn:L (2.1) BS01 CU 1.16.-.- GO:0005737 ... P0CB53 21056572
    1454 2xl7:A (2.4) BS01 CU ? N/A P73600 20702411
    1455 2xla:A (1.93) BS01 CU ? N/A P73600 20702411
    1456 2xla:B (1.93) BS01 CU ? N/A P73600 20702411
    1457 2xla:C (1.93) BS01 CU ? N/A P73600 20702411
    1458 2xla:D (1.93) BS01 CU ? N/A P73600 20702411
    1459 2xlg:A (1.8) BS01 CU ? N/A P73600 20702411
    1460 2xll:A (2.305) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1461 2xll:A (2.305) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1462 2xll:A (2.305) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1463 2xll:A (2.305) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1464 2xll:B (2.305) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1465 2xll:B (2.305) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1466 2xll:B (2.305) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1467 2xll:B (2.305) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1468 2xll:C (2.305) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1469 2xll:C (2.305) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1470 2xll:C (2.305) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1471 2xll:C (2.305) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1472 2xll:D (2.305) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1473 2xll:D (2.305) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1474 2xll:D (2.305) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1475 2xll:D (2.305) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 21544308
    1476 2xmj:A (1.08) BS01 CU ? GO:0005507 ... P73213 20726513
    1477 2xmj:B (1.08) BS01 CU ? GO:0005507 ... P73213 20726513
    1478 2xmk:A (1.35) BS01 CU ? GO:0005507 ... P73213 20726513
    1479 2xmk:B (1.35) BS01 CU ? GO:0005507 ... P73213 20726513
    1480 2xmm:A (1.65) BS01 CU ? GO:0005507 ... P73213 20726513
    1481 2xmm:A (1.65) BS02 CU ? GO:0005507 ... P73213 20726513
    1482 2xmm:B (1.65) BS01 CU ? GO:0005507 ... P73213 20726513
    1483 2xu9:A (1.501) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1484 2xu9:A (1.501) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1485 2xu9:A (1.501) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1486 2xu9:A (1.501) BS04 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1487 2xwz:A (2.34) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1488 2xwz:A (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1489 2xwz:B (2.34) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1490 2xwz:B (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1491 2xwz:C (2.34) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1492 2xwz:C (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1493 2xwz:D (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1494 2xwz:D (2.34) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1495 2xwz:E (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1496 2xwz:E (2.34) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1497 2xwz:F (2.34) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1498 2xwz:F (2.34) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1499 2xx0:A (1.46) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1500 2xx0:A (1.46) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1501 2xx0:B (1.46) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1502 2xx0:B (1.46) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1503 2xx1:A (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1504 2xx1:A (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1505 2xx1:B (3.0) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1506 2xx1:B (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1507 2xx1:C (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1508 2xx1:C (3.0) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1509 2xx1:D (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1510 2xx1:D (3.0) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1511 2xx1:E (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1512 2xx1:E (3.0) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1513 2xx1:F (3.0) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1514 2xx1:F (3.0) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1515 2xxf:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1516 2xxf:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1517 2xxf:B (1.5) BS01 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1518 2xxf:B (1.5) BS03 CU 1.7.2.1 GO:0005507 ... O68601 21469743
    1519 2xxg:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 19053252
    1520 2xxg:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 19053252
    1521 2xxg:C (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 19053252
    1522 2xxg:C (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 19053252
    1523 2xyb:A (1.75) BS01 CU 1.10.3.2 GO:0005507 ... Q9UVQ2 N/A
    1524 2xyb:A (1.75) BS02 CU 1.10.3.2 GO:0005507 ... Q9UVQ2 N/A
    1525 2xyb:A (1.75) BS03 CU 1.10.3.2 GO:0005507 ... Q9UVQ2 N/A
    1526 2xyb:A (1.75) BS04 CU 1.10.3.2 GO:0005507 ... Q9UVQ2 N/A
    1527 2xz4:A (1.72) BS01 CU ? GO:0008270 ... Q8SXQ7 21372849
    1528 2y1a:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... P25006 21215826
    1529 2y1a:A (1.95) BS02 CU 1.7.2.1 GO:0005507 ... P25006 21215826
    1530 2y69:A (1.95) BS03 CU 7.1.1.9 GO:0004129 ... P00396 21211513
    1531 2y69:N (1.95) BS03 CU 7.1.1.9 GO:0004129 ... P00396 21211513
    1532 2y73:A (2.6) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 21585208
    1533 2y73:B (2.6) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 21585208
    1534 2y74:A (2.95) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 21585208
    1535 2y74:B (2.95) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 21585208
    1536 2y9w:A (2.3) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1537 2y9w:A (2.3) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1538 2y9w:B (2.3) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1539 2y9w:B (2.3) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1540 2y9x:A (2.78) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1541 2y9x:A (2.78) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1542 2y9x:B (2.78) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1543 2y9x:B (2.78) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1544 2y9x:C (2.78) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1545 2y9x:C (2.78) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1546 2y9x:D (2.78) BS01 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1547 2y9x:D (2.78) BS02 CU 1.14.18.1 GO:0016491 ... C7FF04 21598903
    1548 2yae:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1549 2yae:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1550 2yae:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1551 2yae:A (1.8) BS04 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1552 2yaf:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1553 2yaf:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1554 2yaf:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1555 2yah:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1556 2yah:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1557 2yah:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1558 2yam:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1559 2yam:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1560 2yam:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1561 2yao:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1562 2yao:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1563 2yao:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1564 2yap:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1565 2yap:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1566 2yap:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1567 2yaq:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1568 2yaq:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1569 2yaq:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1570 2yar:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1571 2yar:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1572 2yar:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 26627648
    1573 2ybb:L (19.0) BS03 CU 7.1.1.9 GO:0004129 ... P00396 21909073
    1574 2ybb:M (19.0) BS01 CU 7.1.1.9 GO:0004129 ... P68530 21909073
    1575 2ybb:M (19.0) BS02 CU 7.1.1.9 GO:0004129 ... P68530 21909073
    1576 2yc3:A (1.4) BS02 CU 2.7.7.60 GO:0003824 ... P69834 21766403
    1577 2yet:A (1.502) BS01 CU 3.2.1.4 GO:0004497 ... G3XAP7 21876164
    1578 2yet:B (1.502) BS01 CU 3.2.1.4 GO:0004497 ... G3XAP7 21876164
    1579 2yev:A (2.36) BS04 CU 7.1.1.9 GO:0004129 ... P98005 22763450
    1580 2yev:D (2.36) BS04 CU 7.1.1.9 GO:0004129 ... P98005 22763450
    1581 2yqb:A (1.41) BS01 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    1582 2yqb:A (1.41) BS02 CU 1.7.2.1 GO:0005507 ... B2UHR8 23535590
    1583 2yx9:A (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17715921
    1584 2yx9:B (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17715921
    1585 2yxv:A (1.81) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1586 2yxv:A (1.81) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1587 2yxv:B (1.81) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1588 2yxv:B (1.81) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1589 2yxw:A (1.5) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1590 2yxw:A (1.5) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1591 2yxw:A (1.5) BS03 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1592 2yxw:B (1.5) BS01 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1593 2yxw:B (1.5) BS02 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1594 2yxw:B (1.5) BS03 CU 1.16.3.4 GO:0004322 ... P36649 17804014
    1595 2z7u:A (2.1) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A
    1596 2z7u:B (2.1) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A
    1597 2z7w:A (1.8) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A
    1598 2z7w:B (1.8) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A
    1599 2z7y:A (1.55) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A
    1600 2z7y:B (1.55) BS02 CU 1.15.1.1 GO:0000209 ... P00442 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218