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BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 1to4:D (1.55) BS01 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    802 1to5:A (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    803 1to5:B (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    804 1to5:C (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    805 1to5:D (2.2) BS02 CU 1.15.1.1 GO:0004784 ... Q01137 15333927
    806 1tu2:A (-1.00) BS01 CU ? GO:0005507 ... P46444 15705583
    807 1tu5:A (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    808 1tu5:B (2.37) BS01 CU 1.4.3.21 GO:0005507 ... Q29437 15701511
    809 1txx:A (2.2) BS01 CU 1.8.-.- GO:0005515 ... P0AA25 10489448
    810 1uat:A (1.9) BS01 CU ? GO:0005507 ... P12335 14516747
    811 1ui7:A (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    812 1ui7:A (2.0) BS02 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    813 1ui7:B (2.0) BS01 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    814 1ui7:B (2.0) BS02 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    815 1ui8:A (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    816 1ui8:B (1.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 14979714
    817 1uri:A (1.94) BS01 CU ? GO:0005507 ... P00280 8383207
    818 1uri:B (1.94) BS01 CU ? GO:0005507 ... P00280 8383207
    819 1us1:A (2.9) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    820 1us1:B (2.9) BS01 CU 1.4.3.21 GO:0005507 ... Q16853 16046623
    821 1uxl:A (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    822 1uxl:B (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    823 1uxl:C (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    824 1uxl:D (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    825 1uxl:E (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    826 1uxl:F (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    827 1uxl:G (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    828 1uxl:H (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    829 1uxl:I (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    830 1uxl:J (1.6) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    831 1uxm:A (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    832 1uxm:B (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    833 1uxm:C (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    834 1uxm:D (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    835 1uxm:E (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    836 1uxm:F (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    837 1uxm:G (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    838 1uxm:H (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    839 1uxm:I (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    840 1uxm:J (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    841 1uxm:K (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    842 1uxm:L (1.9) BS01 CU 1.15.1.1 GO:0000302 ... P00441 15056757
    843 1v10:A (1.7) BS01 CU 1.10.3.2 GO:0005507 ... Q6H9H7 15364578
    844 1v10:A (1.7) BS02 CU 1.10.3.2 GO:0005507 ... Q6H9H7 15364578
    845 1v10:A (1.7) BS03 CU 1.10.3.2 GO:0005507 ... Q6H9H7 15364578
    846 1v10:A (1.7) BS04 CU 1.10.3.2 GO:0005507 ... Q6H9H7 15364578
    847 1v54:A (1.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 14673090
    848 1v54:N (1.8) BS01 CU 7.1.1.9 GO:0004129 ... P00396 14673090
    849 1v55:A (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 14673090
    850 1v55:N (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 14673090
    851 1v6p:A (0.87) BS01 CU ? GO:0005576 ... P60770 15252034
    852 1v6p:A (0.87) BS02 CU ? GO:0005576 ... P60770 15252034
    853 1v6p:B (0.87) BS01 CU ? GO:0005576 ... P60770 15252034
    854 1w2z:A (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    855 1w2z:B (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    856 1w2z:C (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    857 1w2z:D (2.24) BS01 CU 1.4.3.21 GO:0005507 ... Q43077 15533431
    858 1w4n:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    859 1w4n:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    860 1w5z:A (1.86) BS01 CU 1.4.3.21 GO:0005507 ... P46881 18607080
    861 1w6c:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    862 1w6c:A (2.2) BS02 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    863 1w6g:A (1.55) BS01 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    864 1w6g:A (1.55) BS02 CU 1.4.3.21 GO:0005507 ... P46881 17077478
    865 1w6l:A (2.0) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    866 1w6l:A (2.0) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    867 1w6l:A (2.0) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    868 1w6l:A (2.0) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    869 1w6w:A (2.2) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    870 1w6w:A (2.2) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    871 1w6w:A (2.2) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    872 1w6w:A (2.2) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    873 1w77:A (2.0) BS01 CU 2.7.7.60 GO:0003824 ... P69834 16478479
    874 1w7c:A (1.23) BS01 CU 1.4.3.- GO:0005507 ... Q96X16 16929109
    875 1w8e:A (2.2) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    876 1w8e:A (2.2) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    877 1w8e:A (2.2) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    878 1w8e:A (2.2) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 16234932
    879 1wa0:X (1.6) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    880 1wa0:X (1.6) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    881 1wa1:X (1.65) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    882 1wa1:X (1.65) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    883 1wa2:X (1.72) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    884 1wa2:X (1.72) BS02 CU 1.7.2.1 GO:0005507 ... O68601 15610025
    885 1wae:A (1.95) BS01 CU 1.7.2.1 GO:0005507 ... O68601 15554622
    886 1ws8:A (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    887 1ws8:B (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    888 1ws8:C (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    889 1ws8:D (1.6) BS01 CU ? GO:0009055 ... P80728 15858169
    890 1wx2:A (1.8) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    891 1wx2:A (1.8) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    892 1wx4:A (1.5) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    893 1wx4:A (1.5) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    894 1x9r:A (1.9) BS01 CU ? GO:0009055 ... P42849 15631465
    895 1x9r:B (1.9) BS01 CU ? GO:0009055 ... P42849 15631465
    896 1x9u:A (1.8) BS01 CU ? GO:0009055 ... P42849 15631465
    897 1x9u:B (1.8) BS01 CU ? GO:0009055 ... P42849 15631465
    898 1xb3:A (1.501) BS01 CU ? GO:0005507 ... P00282 15449946
    899 1xb3:B (1.501) BS01 CU ? GO:0005507 ... P00282 15449946
    900 1xb6:A (1.823) BS01 CU ? GO:0005507 ... P00282 15449946
    901 1xb6:B (1.823) BS01 CU ? GO:0005507 ... P00282 15449946
    902 1xme:A (2.3) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 15735345
    903 1xso:A (1.49) BS01 CU 1.15.1.1 GO:0004784 ... P15107 15299740
    904 1xso:B (1.49) BS01 CU 1.15.1.1 GO:0004784 ... P15107 15299740
    905 1xtl:A (2.0) BS01 CU ? GO:0004784 ... O31851 16173759
    906 1xtl:B (2.0) BS01 CU ? GO:0004784 ... O31851 16173759
    907 1xtl:C (2.0) BS01 CU ? GO:0004784 ... O31851 16173759
    908 1xtl:D (2.0) BS01 CU ? GO:0004784 ... O31851 16173759
    909 1xtm:A (1.6) BS01 CU ? GO:0004784 ... O31851 16173759
    910 1xtm:B (1.6) BS01 CU ? GO:0004784 ... O31851 16173759
    911 1y3j:A (-1.00) BS01 CU 7.2.2.8 GO:0046872 ... Q04656 15670166
    912 1yai:A (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    913 1yai:B (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    914 1yai:C (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P00446 8917495
    915 1yaz:A (1.7) BS01 CU 1.15.1.1 GO:0004784 ... P00445 10026301
    916 1yew:A (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    917 1yew:E (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    918 1yew:I (2.801) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 15674245
    919 1yi9:A (1.7) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    920 1yi9:A (1.7) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    921 1yip:A (2.2) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    922 1yip:A (2.2) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    923 1yjk:A (2.0) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    924 1yjk:A (2.0) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 16100265
    925 1z9n:A (1.5) BS01 CU 1.15.1.1 GO:0004784 ... Q59452 19103206
    926 1z9n:B (1.5) BS02 CU 1.15.1.1 GO:0004784 ... Q59452 19103206
    927 1z9n:C (1.5) BS01 CU 1.15.1.1 GO:0004784 ... Q59452 19103206
    928 1z9n:D (1.5) BS02 CU 1.15.1.1 GO:0004784 ... Q59452 19103206
    929 1z9p:A (1.5) BS01 CU 1.15.1.1 GO:0005507 ... Q59452 19103206
    930 1z9p:B (1.5) BS01 CU 1.15.1.1 GO:0005507 ... Q59452 19103206
    931 1zdq:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    932 1zdq:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    933 1zdq:B (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    934 1zdq:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    935 1zdq:C (1.8) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    936 1zdq:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    937 1zds:A (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    938 1zds:A (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    939 1zds:B (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    940 1zds:B (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    941 1zds:C (1.55) BS01 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    942 1zds:C (1.55) BS02 CU 1.7.2.1 GO:0005507 ... P38501 16574144
    943 1zia:A (1.54) BS01 CU ? GO:0005507 ... P19567 8138527
    944 1zib:A (2.0) BS01 CU ? GO:0005507 ... P19567 8138527
    945 1zm5:A (2.5) BS02 CU ? N/A Q47673 16540117
    946 1zv2:A (1.74) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 16131751
    947 1zv2:A (1.74) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 16131751
    948 1zxi:B (1.7) BS01 CU 1.2.5.3 GO:0005506 ... P19919 16091936
    949 1zxi:E (1.7) BS01 CU 1.2.5.3 GO:0005506 ... P19919 16091936
    950 2a3t:A (1.85) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 16131751
    951 2a3t:A (1.85) BS02 CU 1.7.2.1 GO:0005507 ... Q53239 16131751
    952 2aan:A (1.85) BS01 CU ? GO:0005507 ... Q8RMH6 N/A
    953 2aeo:A (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 16416478
    954 2aeo:B (1.8) BS01 CU 1.15.1.1 GO:0000209 ... P00442 16416478
    955 2afn:A (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    956 2afn:A (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    957 2afn:B (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    958 2afn:B (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    959 2afn:C (2.0) BS01 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    960 2afn:C (2.0) BS02 CU 1.7.2.1 GO:0005507 ... P38501 7547950
    961 2ahk:A (1.71) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    962 2ahk:A (1.71) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 16436386
    963 2ahk:B (1.71) BS01 CU ? GO:0005507 ... Q83WS1 16436386
    964 2aps:A (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P24702 10656823
    965 2aps:A (1.9) BS03 CU 1.15.1.1 GO:0004784 ... P24702 10656823
    966 2aps:B (1.9) BS01 CU 1.15.1.1 GO:0004784 ... P24702 10656823
    967 2aps:B (1.9) BS03 CU 1.15.1.1 GO:0004784 ... P24702 10656823
    968 2aqn:A (1.4) BS03 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    969 2aqn:B (1.4) BS01 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    970 2aqn:C (1.4) BS03 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    971 2aqq:A (1.65) BS02 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    972 2aqq:B (1.65) BS01 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    973 2aqq:C (1.65) BS02 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    974 2aqr:A (1.75) BS02 CU 1.15.1.1 GO:0004784 ... Q59623 N/A
    975 2aqr:B (1.75) BS01 CU 1.15.1.1 GO:0004784 ... Q59623 N/A
    976 2aqr:C (1.75) BS02 CU 1.15.1.1 GO:0004784 ... Q59623 N/A
    977 2aqs:A (1.7) BS03 CU 1.15.1.1 GO:0004784 ... Q59623 N/A
    978 2aqs:B (1.7) BS01 CU 1.15.1.1 GO:0004784 ... Q59623 N/A
    979 2aqt:A (1.8) BS03 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    980 2aqt:B (1.8) BS03 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    981 2aqt:C (1.8) BS03 CU 1.15.1.1 GO:0004784 ... P57005 N/A
    982 2avf:A (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    983 2avf:A (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    984 2avf:B (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    985 2avf:B (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    986 2avf:C (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    987 2avf:C (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    988 2avf:D (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    989 2avf:D (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    990 2avf:E (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    991 2avf:E (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    992 2avf:F (2.6) BS01 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    993 2avf:F (2.6) BS02 CU 1.7.2.1 GO:0005507 ... P25006 16293231
    994 2aza:A (1.8) BS01 CU ? GO:0005507 ... P00280 3210236
    995 2aza:B (1.8) BS01 CU ? GO:0005507 ... P00280 3210236
    996 2azu:A (1.9) BS01 CU ? GO:0005507 ... P00282 1901363
    997 2azu:B (1.9) BS01 CU ? GO:0005507 ... P00282 1901363
    998 2azu:C (1.9) BS01 CU ? GO:0005507 ... P00282 1901363
    999 2azu:D (1.9) BS01 CU ? GO:0005507 ... P00282 1901363
    1000 2b7j:A (2.3) BS01 CU ? N/A P23833 16570183
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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