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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6401 8rgc:A (1.55) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    6402 8rgc:A (1.55) BS07 CU N/A GO:0016491 ... H0SLX7 39002715
    6403 8rgd:A (1.71) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    6404 8rgd:A (1.71) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    6405 8rry:A (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    6406 8rry:B (1.45561) BS01 CU ? GO:0000272 ... P9WEM3 38814816
    6407 8ru9:A (1.1) BS02 CU N/A N/A Q89EJ6 39002715
    6408 8ru9:A (1.1) BS03 CU N/A N/A Q89EJ6 39002715
    6409 8rur:A (1.13) BS02 CU N/A N/A Q89EJ6 39002715
    6410 8rur:A (1.13) BS03 CU N/A N/A Q89EJ6 39002715
    6411 8ryj:A (1.16) BS02 CU N/A N/A Q89EJ6 39002715
    6412 8ryj:A (1.16) BS03 CU N/A N/A Q89EJ6 39002715
    6413 8ryr:A (1.25) BS02 CU N/A N/A Q89EJ6 39002715
    6414 8ryr:A (1.25) BS03 CU N/A N/A Q89EJ6 39002715
    6415 8ryu:A (1.45) BS02 CU N/A N/A Q89EJ6 39002715
    6416 8ryu:A (1.45) BS03 CU N/A N/A Q89EJ6 39002715
    6417 8ryv:A (1.45) BS02 CU N/A N/A Q89EJ6 39002715
    6418 8ryv:A (1.45) BS03 CU N/A N/A Q89EJ6 39002715
    6419 8s0w:A (1.05) BS01 CU N/A N/A Q89EJ6 39002715
    6420 8s0w:A (1.05) BS02 CU N/A N/A Q89EJ6 39002715
    6421 8s2q:A (1.05) BS01 CU N/A N/A Q89EJ6 39002715
    6422 8s2q:A (1.05) BS02 CU N/A N/A Q89EJ6 39002715
    6423 8s5x:A (1.12) BS01 CU N/A N/A Q89EJ6 39002715
    6424 8s5x:A (1.12) BS02 CU N/A N/A Q89EJ6 39002715
    6425 8s5y:A (1.3) BS01 CU N/A N/A Q89EJ6 39002715
    6426 8s5y:A (1.3) BS02 CU N/A N/A Q89EJ6 39002715
    6427 8s63:A (1.17) BS01 CU N/A N/A Q89EJ6 39002715
    6428 8s63:A (1.17) BS02 CU N/A N/A Q89EJ6 39002715
    6429 8s64:A (1.42) BS02 CU N/A N/A Q89EJ6 39002715
    6430 8s64:A (1.42) BS03 CU N/A N/A Q89EJ6 39002715
    6431 8s68:A (1.66) BS01 CU N/A N/A Q89EJ6 39002715
    6432 8s68:A (1.66) BS02 CU N/A N/A Q89EJ6 39002715
    6433 8s69:A (1.78) BS02 CU N/A N/A Q89EJ6 39002715
    6434 8s69:A (1.78) BS03 CU N/A N/A Q89EJ6 39002715
    6435 8smr:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    6436 8snh:E (2.7) BS01 CU 7.1.1.9 GO:0004129 ... Q9HWP8 37751552
    6437 8sqw:A (2.16) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6438 8sqw:A (2.16) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6439 8sqw:C (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6440 8sqw:E (2.16) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6441 8sqw:E (2.16) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6442 8sqw:G (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6443 8sqw:I (2.16) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6444 8sqw:I (2.16) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6445 8sqw:K (2.16) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6446 8sr1:A (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6447 8sr1:A (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6448 8sr1:C (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6449 8sr1:E (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6450 8sr1:E (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6451 8sr1:G (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6452 8sr1:I (2.18) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6453 8sr1:I (2.18) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6454 8sr1:K (2.18) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6455 8sr2:A (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 N/A
    6456 8sr2:A (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 N/A
    6457 8sr2:C (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6458 8sr2:C (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6459 8sr2:E (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 N/A
    6460 8sr2:E (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 N/A
    6461 8sr2:G (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6462 8sr2:G (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6463 8sr2:I (2.36) BS01 CU 1.14.18.3 N/A G1UBD1 N/A
    6464 8sr2:I (2.36) BS02 CU 1.14.18.3 N/A G1UBD1 N/A
    6465 8sr2:K (2.36) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6466 8sr2:K (2.36) BS02 CU 1.14.13.25 GO:0004497 ... Q603F1 N/A
    6467 8sr4:A (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6468 8sr4:A (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6469 8sr4:C (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6470 8sr4:E (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6471 8sr4:E (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6472 8sr4:G (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6473 8sr4:I (3.12) BS01 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6474 8sr4:I (3.12) BS02 CU 1.14.18.3 GO:0004497 ... G1UBD1 38187819
    6475 8sr4:K (3.12) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6476 8sr5:A (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6477 8sr5:A (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6478 8sr5:E (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6479 8sr5:E (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6480 8sr5:I (3.22) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6481 8sr5:I (3.22) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6482 8sy3:A (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    6483 8sy3:B (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    6484 8t7l:A (1.89) BS01 CU N/A N/A Q73MJ7 N/A
    6485 8t7l:B (1.89) BS01 CU N/A N/A Q73MJ7 N/A
    6486 8t7m:A (1.82) BS02 CU N/A N/A Q73MJ7 N/A
    6487 8t7m:B (1.82) BS02 CU N/A N/A Q73MJ7 N/A
    6488 8tx5:A (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    6489 8tx5:B (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    6490 8tx5:C (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    6491 8tx5:D (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    6492 8tx6:A (1.56) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    6493 8u1y:B (1.74) BS01 CU N/A N/A P0AEG4 N/A
    6494 8u8p:A (2.2) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6495 8u8p:A (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6496 8u8p:A (2.2) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6497 8u8p:A (2.2) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6498 8u8p:B (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6499 8u8p:B (2.2) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6500 8u8p:B (2.2) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6501 8u8p:B (2.2) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    6502 8u8p:C (2.2) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6503 8u8p:C (2.2) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6504 8u8p:C (2.2) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    6505 8u8p:C (2.2) BS06 CU ? GO:0005507 ... Q9XAL8 37926680
    6506 8u8q:A (2.7) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6507 8u8q:A (2.7) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6508 8u8q:A (2.7) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6509 8u8q:A (2.7) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6510 8u8q:B (2.7) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6511 8u8q:B (2.7) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6512 8u8q:B (2.7) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6513 8u8q:B (2.7) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    6514 8u8q:C (2.7) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6515 8u8q:C (2.7) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6516 8u8q:C (2.7) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    6517 8u8r:A (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6518 8u8r:A (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6519 8u8r:A (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6520 8u8r:A (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6521 8u8r:B (2.86) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6522 8u8r:B (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6523 8u8r:B (2.86) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6524 8u8r:C (2.86) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6525 8u8r:C (2.86) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6526 8u8r:C (2.86) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6527 8u8r:C (2.86) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    6528 8u8s:A (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6529 8u8s:A (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6530 8u8s:A (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6531 8u8s:A (2.63) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6532 8u8s:B (2.63) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6533 8u8s:B (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6534 8u8s:B (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6535 8u8s:B (2.63) BS10 CU ? GO:0005507 ... Q9XAL8 37926680
    6536 8u8s:C (2.63) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6537 8u8s:C (2.63) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6538 8u8s:C (2.63) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6539 8u8s:C (2.63) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    6540 8u8t:A (2.9) BS01 CU ? GO:0005507 ... Q9XAL8 37926680
    6541 8u8t:A (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6542 8u8t:A (2.9) BS09 CU ? GO:0005507 ... Q9XAL8 37926680
    6543 8u8t:B (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6544 8u8t:B (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6545 8u8t:B (2.9) BS08 CU ? GO:0005507 ... Q9XAL8 37926680
    6546 8u8t:C (2.9) BS02 CU ? GO:0005507 ... Q9XAL8 37926680
    6547 8u8t:C (2.9) BS03 CU ? GO:0005507 ... Q9XAL8 37926680
    6548 8u8t:C (2.9) BS04 CU ? GO:0005507 ... Q9XAL8 37926680
    6549 8u8t:C (2.9) BS05 CU ? GO:0005507 ... Q9XAL8 37926680
    6550 8ugh:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    6551 8ugi:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    6552 8ugj:4A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    6553 8ugj:8A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    6554 8ugl:4A (3.0) BS03 CU N/A GO:0004129 ... O79876 38811722
    6555 8ugn:4A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    6556 8ugn:8A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    6557 8ugr:4A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    6558 8ugr:8A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    6559 8um6:B (1.95) BS01 CU ? N/A P94431 38342077
    6560 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6561 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6562 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6563 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6564 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6565 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6566 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6567 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    6568 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    6569 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    6570 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    6571 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    6572 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6573 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6574 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6575 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6576 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6577 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6578 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6579 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6580 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6581 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6582 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6583 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6584 8z75:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6585 8z75:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6586 8z75:C (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6587 8z76:A (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6588 8z76:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6589 8z76:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6590 8z76:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6591 8z76:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6592 8z76:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6593 8z76:C (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6594 8z76:C (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6595 8z76:C (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6596 8z77:A (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6597 8z77:A (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6598 8z77:A (2.0) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6599 8z77:B (2.0) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6600 8z77:B (2.0) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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