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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 8jib:H (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    6202 8jib:I (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    6203 8jib:I (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    6204 8jib:J (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    6205 8jib:J (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    6206 8jib:K (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    6207 8jib:K (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    6208 8jib:L (3.15) BS01 CU ? GO:0004497 ... Q16G28 N/A
    6209 8jib:L (3.15) BS02 CU ? GO:0004497 ... Q16G28 N/A
    6210 8k3l:A (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    6211 8k3l:C (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    6212 8k3l:E (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    6213 8k3l:G (2.3) BS01 CU N/A GO:0000302 ... P00441 N/A
    6214 8k65:A (2.0) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    6215 8k6y:A (2.0) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    6216 8k9n:A (0.86) BS01 CU ? GO:0005507 ... P04377 38232298
    6217 8k9p:A (1.5) BS01 CU ? GO:0042597 ... P04377 38232298
    6218 8ovc:L (2.8) BS03 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    6219 8ovc:Q (2.8) BS01 CU N/A GO:0004129 ... A0R057 38902248
    6220 8ovc:Q (2.8) BS02 CU N/A GO:0004129 ... A0R057 38902248
    6221 8ovc:R (2.8) BS03 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    6222 8ovc:X (2.8) BS01 CU N/A GO:0004129 ... A0R057 38902248
    6223 8ovc:X (2.8) BS02 CU N/A GO:0004129 ... A0R057 38902248
    6224 8ovd:L (2.3) BS04 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    6225 8ovd:Q (2.3) BS01 CU N/A GO:0004129 ... A0R057 38902248
    6226 8ovd:Q (2.3) BS02 CU N/A GO:0004129 ... A0R057 38902248
    6227 8ovd:R (2.3) BS04 CU N/A GO:0004129 ... A0A2U9PNL2 38902248
    6228 8ovd:X (2.3) BS01 CU N/A GO:0004129 ... A0R057 38902248
    6229 8ovd:X (2.3) BS02 CU N/A GO:0004129 ... A0R057 38902248
    6230 8oyi:A (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6231 8oyi:A (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6232 8oyi:C (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6233 8oyi:E (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6234 8oyi:E (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6235 8oyi:G (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6236 8oyi:I (2.19) BS01 CU 1.14.18.3 N/A G1UBD1 38187819
    6237 8oyi:I (2.19) BS02 CU 1.14.18.3 N/A G1UBD1 38187819
    6238 8oyi:K (2.19) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 38187819
    6239 8p3l:A (1.8) BS01 CU ? N/A W0DP94 N/A
    6240 8p3l:A (1.8) BS02 CU ? N/A W0DP94 N/A
    6241 8p3l:D (1.8) BS01 CU ? N/A W0DP94 N/A
    6242 8p3l:D (1.8) BS02 CU ? N/A W0DP94 N/A
    6243 8p3l:G (1.8) BS01 CU ? N/A W0DP94 N/A
    6244 8p3l:G (1.8) BS02 CU ? N/A W0DP94 N/A
    6245 8p3l:J (1.8) BS01 CU ? N/A W0DP94 N/A
    6246 8p3l:J (1.8) BS02 CU ? N/A W0DP94 N/A
    6247 8p3m:2 (2.07) BS01 CU ? N/A W0DP94 N/A
    6248 8p3m:2 (2.07) BS02 CU ? N/A W0DP94 N/A
    6249 8p3m:5 (2.07) BS01 CU ? N/A W0DP94 N/A
    6250 8p3m:5 (2.07) BS02 CU ? N/A W0DP94 N/A
    6251 8p3m:8 (2.07) BS01 CU ? N/A W0DP94 N/A
    6252 8p3m:8 (2.07) BS02 CU ? N/A W0DP94 N/A
    6253 8p3m:A (2.07) BS01 CU ? N/A W0DP94 N/A
    6254 8p3m:A (2.07) BS02 CU ? N/A W0DP94 N/A
    6255 8p3m:D (2.07) BS01 CU ? N/A W0DP94 N/A
    6256 8p3m:D (2.07) BS02 CU ? N/A W0DP94 N/A
    6257 8p3m:G (2.07) BS01 CU ? N/A W0DP94 N/A
    6258 8p3m:G (2.07) BS02 CU ? N/A W0DP94 N/A
    6259 8p3m:J (2.07) BS01 CU ? N/A W0DP94 N/A
    6260 8p3m:J (2.07) BS02 CU ? N/A W0DP94 N/A
    6261 8p3m:M (2.07) BS01 CU ? N/A W0DP94 N/A
    6262 8p3m:M (2.07) BS02 CU ? N/A W0DP94 N/A
    6263 8p3m:P (2.07) BS01 CU ? N/A W0DP94 N/A
    6264 8p3m:P (2.07) BS02 CU ? N/A W0DP94 N/A
    6265 8p3m:S (2.07) BS01 CU ? N/A W0DP94 N/A
    6266 8p3m:S (2.07) BS02 CU ? N/A W0DP94 N/A
    6267 8p3m:V (2.07) BS01 CU ? N/A W0DP94 N/A
    6268 8p3m:V (2.07) BS02 CU ? N/A W0DP94 N/A
    6269 8p3m:Y (2.07) BS01 CU ? N/A W0DP94 N/A
    6270 8p3m:Y (2.07) BS02 CU ? N/A W0DP94 N/A
    6271 8p3m:e (2.07) BS01 CU ? N/A W0DP94 N/A
    6272 8p3m:e (2.07) BS02 CU ? N/A W0DP94 N/A
    6273 8p3m:h (2.07) BS01 CU ? N/A W0DP94 N/A
    6274 8p3m:h (2.07) BS02 CU ? N/A W0DP94 N/A
    6275 8p3m:k (2.07) BS01 CU ? N/A W0DP94 N/A
    6276 8p3m:k (2.07) BS02 CU ? N/A W0DP94 N/A
    6277 8p3m:x (2.07) BS01 CU ? N/A W0DP94 N/A
    6278 8p3m:x (2.07) BS02 CU ? N/A W0DP94 N/A
    6279 8p4g:A (2.59) BS01 CU ? GO:0005507 ... Q8ZWA8 38227199
    6280 8p4g:A (2.59) BS02 CU ? GO:0005507 ... Q8ZWA8 38227199
    6281 8p4g:A (2.59) BS03 CU ? GO:0005507 ... Q8ZWA8 38227199
    6282 8p4g:A (2.59) BS04 CU ? GO:0005507 ... Q8ZWA8 38227199
    6283 8p4g:B (2.59) BS01 CU ? GO:0005507 ... Q8ZWA8 38227199
    6284 8p4g:B (2.59) BS02 CU ? GO:0005507 ... Q8ZWA8 38227199
    6285 8p4g:B (2.59) BS03 CU ? GO:0005507 ... Q8ZWA8 38227199
    6286 8p4g:B (2.59) BS04 CU ? GO:0005507 ... Q8ZWA8 38227199
    6287 8p9u:A (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6288 8p9u:A (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6289 8p9u:A (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6290 8p9u:B (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6291 8p9u:B (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6292 8p9u:B (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6293 8p9u:C (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6294 8p9u:C (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6295 8p9u:C (2.0) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6296 8p9u:C (2.0) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6297 8p9u:D (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6298 8p9u:D (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6299 8p9u:D (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6300 8p9u:E (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6301 8p9u:E (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6302 8p9u:E (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6303 8p9u:F (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6304 8p9u:F (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6305 8p9u:F (2.0) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6306 8p9v:A (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6307 8p9v:A (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6308 8p9v:A (2.2) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6309 8p9v:A (2.2) BS06 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6310 8p9v:B (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6311 8p9v:B (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6312 8p9v:B (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6313 8p9v:B (2.2) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6314 8p9v:C (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6315 8p9v:C (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6316 8p9v:C (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6317 8p9v:D (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6318 8p9v:D (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6319 8p9v:D (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6320 8p9v:D (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6321 8p9v:E (2.2) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6322 8p9v:E (2.2) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6323 8p9v:E (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6324 8p9v:F (2.2) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6325 8p9v:F (2.2) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6326 8p9v:F (2.2) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6327 8p9v:F (2.2) BS06 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 37569288
    6328 8paz:A (1.6) BS01 CU ? GO:0005507 ... P04377 9341204
    6329 8pf0:A (2.2) BS01 CU N/A N/A N/A 39068227
    6330 8pf0:A (2.2) BS02 CU N/A N/A N/A 39068227
    6331 8po9:A (2.2) BS02 CU ? N/A Q24995 37729416
    6332 8po9:B (2.2) BS02 CU ? N/A Q24995 37729416
    6333 8po9:C (2.2) BS02 CU ? N/A Q24995 37729416
    6334 8po9:D (2.2) BS02 CU ? N/A Q24995 37729416
    6335 8po9:E (2.2) BS01 CU ? N/A Q24995 37729416
    6336 8po9:F (2.2) BS01 CU ? N/A Q24995 37729416
    6337 8pw5:a (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    6338 8pw5:n (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    6339 8pw6:n (3.3) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    6340 8pw7:n (3.5) BS01 CU 7.1.1.9 GO:0001666 ... P00397 38575788
    6341 8q1b:a (3.4) BS03 CU 7.1.1.9 GO:0004129 ... P07657 37939086
    6342 8q6m:A (1.77) BS02 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    6343 8q6m:B (1.77) BS02 CU 1.15.1.1 GO:0000302 ... P00441 38289969
    6344 8q74:A (3.68) BS01 CU N/A GO:0005524 ... Q6H7M3 38538615
    6345 8q9x:A (1.05) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6346 8q9x:A (1.05) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6347 8q9x:A (1.05) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6348 8q9x:A (1.05) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6349 8q9x:A (1.05) BS06 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6350 8q9x:B (1.05) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6351 8q9x:B (1.05) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6352 8q9x:B (1.05) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6353 8q9y:A (1.1) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6354 8q9y:A (1.1) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6355 8q9y:A (1.1) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6356 8q9y:A (1.1) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6357 8q9y:A (1.1) BS06 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6358 8q9y:B (1.1) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6359 8q9y:B (1.1) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6360 8q9y:B (1.1) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6361 8q9y:B (1.1) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    6362 8qgf:A (1.32) BS01 CU N/A N/A I6NAW4 N/A
    6363 8qgf:A (1.32) BS02 CU N/A N/A I6NAW4 N/A
    6364 8qqk:A (2.8) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 38614453
    6365 8r7i:A (1.8) BS05 CU N/A N/A A0A0S3AND7 39151418
    6366 8r7i:A (1.8) BS06 CU N/A N/A A0A0S3AND7 39151418
    6367 8r7i:A (1.8) BS07 CU N/A N/A A0A0S3AND7 39151418
    6368 8r7i:A (1.8) BS08 CU N/A N/A A0A0S3AND7 39151418
    6369 8r8s:A (1.11) BS02 CU N/A N/A Q89EJ6 39002715
    6370 8r8s:A (1.11) BS03 CU N/A N/A Q89EJ6 39002715
    6371 8rfl:A (1.16) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6372 8rfl:A (1.16) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6373 8rfo:A (1.19) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6374 8rfo:A (1.19) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6375 8rfp:A (1.23) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6376 8rfp:A (1.23) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6377 8rfq:A (1.32) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6378 8rfq:A (1.32) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6379 8rfr:A (1.4) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6380 8rfr:A (1.4) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6381 8rfs:A (1.54) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6382 8rfs:A (1.54) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6383 8rft:A (1.7) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6384 8rft:A (1.7) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6385 8rfu:A (2.18) BS02 CU N/A GO:0016491 ... Q89EJ6 39002715
    6386 8rfu:A (2.18) BS03 CU N/A GO:0016491 ... Q89EJ6 39002715
    6387 8rfv:A (1.31) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    6388 8rfv:A (1.31) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    6389 8rfw:A (1.33) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    6390 8rfw:A (1.33) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    6391 8rfx:A (1.4) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    6392 8rfx:A (1.4) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    6393 8rfy:A (1.79) BS01 CU N/A GO:0016491 ... H0SLX7 39002715
    6394 8rfy:A (1.79) BS02 CU N/A GO:0016491 ... H0SLX7 39002715
    6395 8rg8:A (1.21) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    6396 8rg8:A (1.21) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    6397 8rg9:A (1.25) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    6398 8rg9:A (1.25) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    6399 8rgb:A (1.39) BS05 CU N/A GO:0016491 ... H0SLX7 39002715
    6400 8rgb:A (1.39) BS06 CU N/A GO:0016491 ... H0SLX7 39002715
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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