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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 7t4p:A (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    5802 7t4p:C (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    5803 7t4p:E (3.62) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    5804 7t4p:E (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    5805 7t4p:G (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    5806 7t4p:I (3.62) BS01 CU 1.14.18.3 N/A G1UBD1 35298269
    5807 7t4p:I (3.62) BS02 CU 1.14.18.3 N/A G1UBD1 35298269
    5808 7t4p:K (3.62) BS01 CU 1.14.13.25 GO:0004497 ... Q603F1 35298269
    5809 7t5c:A (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    5810 7t5c:B (1.5) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    5811 7t5d:A (2.4) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    5812 7t5d:B (2.4) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    5813 7t5e:A (1.9) BS01 CU 1.14.99.56 GO:0004497 ... Q1K8B6 36507176
    5814 7t5e:B (1.9) BS01 CU ? GO:0004497 ... Q8WZQ2 36507176
    5815 7tc5:A (1.45) BS01 CU ? GO:0005507 ... P00282 35347989
    5816 7tc5:A (1.45) BS02 CU ? GO:0005507 ... P00282 35347989
    5817 7tc5:B (1.45) BS01 CU ? GO:0005507 ... P00282 35347989
    5818 7tc5:B (1.45) BS02 CU ? GO:0005507 ... P00282 35347989
    5819 7tc6:A (1.85) BS01 CU ? GO:0005507 ... P00282 35347989
    5820 7tc6:A (1.85) BS02 CU ? GO:0005507 ... P00282 35347989
    5821 7tc6:B (1.85) BS01 CU ? GO:0005507 ... P00282 35347989
    5822 7tep:A (2.7) BS02 CU ? GO:0005506 ... P0ABE7 35642584
    5823 7tep:B (2.7) BS02 CU ? GO:0005506 ... P0ABE7 35642584
    5824 7tep:C (2.7) BS01 CU ? GO:0005506 ... P0ABE7 35642584
    5825 7tep:D (2.7) BS01 CU ? GO:0005506 ... P0ABE7 35642584
    5826 7tfq:A (1.75) BS01 CU ? GO:0046872 ... A0A2U2H063 N/A
    5827 7thu:A (1.93) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5828 7thu:N (1.93) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5829 7tie:A (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5830 7tie:N (1.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5831 7tih:A (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5832 7tih:N (2.35) BS01 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5833 7tii:A (2.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5834 7tii:N (2.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 35257742
    5835 7tnc:A (1.47) BS01 CU ? GO:0005507 ... P00282 37424080
    5836 7ttv:B (1.99) BS02 CU ? GO:0003756 ... P0AEG4 35789157
    5837 7u2f:A (2.2) BS01 CU ? GO:0005507 ... P00282 37424080
    5838 7vfc:A (1.21) BS01 CU N/A N/A N/A N/A
    5839 7vuw:A (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5840 7vuw:N (1.6) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5841 7vvr:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5842 7vvr:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5843 7vw2:B (2.186) BS01 CU ? GO:0046872 ... V5J1S8 35066349
    5844 7w3e:A (1.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5845 7w3e:N (1.45) BS03 CU 7.1.1.9 GO:0004129 ... P00396 37742916
    5846 7w5z:C1 (3.02) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y4 35357889
    5847 7w5z:C2 (3.02) BS02 CU 7.1.1.9 GO:0004129 ... Q950Y9 35357889
    5848 7w5z:C2 (3.02) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y9 35357889
    5849 7w5z:c1 (3.02) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y4 35357889
    5850 7w5z:c2 (3.02) BS02 CU 7.1.1.9 GO:0004129 ... Q950Y9 35357889
    5851 7w5z:c2 (3.02) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y9 35357889
    5852 7wir:A (1.5) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    5853 7wir:B (1.5) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    5854 7wis:A (1.9) BS01 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    5855 7wis:B (1.9) BS02 CU 1.4.3.21 GO:0005507 ... P46881 36320691
    5856 7wno:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    5857 7wnp:X (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 35546796
    5858 7wwt:A (1.6) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5859 7wwt:B (1.6) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5860 7wwy:A (1.5) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5861 7wwy:B (1.5) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5862 7wx0:A (1.4) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5863 7wx0:B (1.4) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5864 7wx1:A (1.65) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5865 7wx1:B (1.65) BS02 CU 1.15.1.1 GO:0004784 ... Q8WNN6 37156398
    5866 7xma:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    5867 7xma:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    5868 7xmb:A (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    5869 7xmb:N (2.2) BS03 CU 7.1.1.9 GO:0004129 ... P00396 36481732
    5870 7xmc:A (3.09) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    5871 7xmd:A (2.99) BS03 CU 7.1.1.3 GO:0004129 ... P0ABI8 36481732
    5872 7y44:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 24813624
    5873 7y44:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 24813624
    5874 7y8b:A (2.0) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5875 7y8b:A (2.0) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5876 7y8b:A (2.0) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5877 7y8b:A (2.0) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5878 7y8b:B (2.0) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5879 7y8b:B (2.0) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5880 7y8b:B (2.0) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5881 7y8b:B (2.0) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5882 7y8c:A (2.0) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5883 7y8c:A (2.0) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5884 7y8c:A (2.0) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5885 7y8c:A (2.0) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5886 7y8c:B (2.0) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5887 7y8c:B (2.0) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5888 7y8c:B (2.0) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5889 7y8c:B (2.0) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 38042324
    5890 7ynh:A (1.94) BS02 CU 1.4.3.21 GO:0005507 ... P46881 36458614
    5891 7ynh:B (1.94) BS02 CU 1.4.3.21 GO:0005507 ... P46881 36458614
    5892 7ypp:A (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5893 7ypp:B (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5894 7ypp:C (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5895 7ypp:D (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5896 7ypp:E (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5897 7ypp:F (2.2) BS01 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5898 7ypr:A (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5899 7ypr:B (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5900 7ypr:C (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5901 7ypr:D (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5902 7ypr:E (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5903 7ypr:F (2.101) BS02 CU 1.15.1.1 GO:0005507 ... A0A1D1VU85 37358501
    5904 7ypy:A (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    5905 7ypy:N (1.5) BS03 CU 7.1.1.9 GO:0004129 ... P00396 27605664
    5906 7ysu:E (3.2) BS05 CU 2.7.10.1 N/A P22607 37286607
    5907 7z10:a (3.87) BS01 CU 7.1.1.9 GO:0004129 ... P00401 35839926
    5908 7z3f:A (1.7) BS01 CU ? N/A A0A2W1KFF4 38170898
    5909 7z3f:B (1.7) BS01 CU ? N/A A0A2W1KFF4 38170898
    5910 7z3i:A (1.82) BS01 CU ? N/A B7JAQ5 38170898
    5911 7z3i:B (1.82) BS01 CU ? N/A B7JAQ5 38170898
    5912 7z5p:A (2.991) BS01 CU ? GO:0005507 ... A8FAG9 35624560
    5913 7z5p:A (2.991) BS02 CU ? GO:0005507 ... A8FAG9 35624560
    5914 7z5p:A (2.991) BS03 CU ? GO:0005507 ... A8FAG9 35624560
    5915 7z5p:A (2.991) BS04 CU ? GO:0005507 ... A8FAG9 35624560
    5916 7z5p:B (2.991) BS01 CU ? GO:0005507 ... A8FAG9 35624560
    5917 7z5p:B (2.991) BS02 CU ? GO:0005507 ... A8FAG9 35624560
    5918 7z5p:B (2.991) BS03 CU ? GO:0005507 ... A8FAG9 35624560
    5919 7z5p:B (2.991) BS04 CU ? GO:0005507 ... A8FAG9 35624560
    5920 7zcn:A (1.19) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5921 7zcn:A (1.19) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5922 7zco:A (1.22) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5923 7zco:A (1.22) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5924 7zcp:A (1.29) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5925 7zcp:A (1.29) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5926 7zcq:A (1.35) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5927 7zcq:A (1.35) BS03 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5928 7zcr:A (1.45) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5929 7zcr:A (1.45) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5930 7zcs:A (1.61) BS01 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5931 7zcs:A (1.61) BS02 CU 1.7.2.1 GO:0005507 ... H0SLX7 35862453
    5932 7ze9:AAA (2.646) BS01 CU ? N/A G2QH80 37066045
    5933 7ze9:BBB (2.646) BS01 CU ? N/A G2QH80 37066045
    5934 7ze9:CCC (2.646) BS01 CU ? N/A G2QH80 37066045
    5935 7zgy:A (2.54) BS04 CU ? N/A Q9RRB6 35577074
    5936 7zgy:A (2.54) BS05 CU ? N/A Q9RRB6 35577074
    5937 7zgy:A (2.54) BS06 CU ? N/A Q9RRB6 35577074
    5938 7zgy:B (2.54) BS05 CU ? N/A Q9RRB6 35577074
    5939 7zgy:B (2.54) BS06 CU ? N/A Q9RRB6 35577074
    5940 7zgy:B (2.54) BS07 CU ? N/A Q9RRB6 35577074
    5941 7zgy:C (2.54) BS05 CU ? N/A Q9RRB6 35577074
    5942 7zgy:C (2.54) BS06 CU ? N/A Q9RRB6 35577074
    5943 7zgy:C (2.54) BS07 CU ? N/A Q9RRB6 35577074
    5944 7zjb:B (1.37) BS01 CU ? N/A Q9S296 37005446
    5945 7zn6:A (1.9) BS02 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    5946 7zn6:A (1.9) BS03 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    5947 7zn6:A (1.9) BS04 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    5948 7zn6:A (1.9) BS05 CU 1.-.-.- GO:0005507 ... G2QFD0 37326583
    5949 7znq:D (3.04) BS02 CU ? N/A P19843 35896743
    5950 7zqe:M (2.55) BS01 CU ? GO:0005507 ... P18068 36229605
    5951 7zve:E (2.28) BS01 CU 1.1.1.49 GO:0004345 ... P11413 37798264
    5952 8aca:A (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5953 8aca:B (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5954 8aca:C (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5955 8acq:A (2.54) BS04 CU ? N/A Q9RRB6 36502921
    5956 8acq:A (2.54) BS05 CU ? N/A Q9RRB6 36502921
    5957 8acq:A (2.54) BS06 CU ? N/A Q9RRB6 36502921
    5958 8acq:B (2.54) BS05 CU ? N/A Q9RRB6 36502921
    5959 8acq:B (2.54) BS06 CU ? N/A Q9RRB6 36502921
    5960 8acq:B (2.54) BS07 CU ? N/A Q9RRB6 36502921
    5961 8acq:C (2.54) BS05 CU ? N/A Q9RRB6 36502921
    5962 8acq:C (2.54) BS06 CU ? N/A Q9RRB6 36502921
    5963 8acq:C (2.54) BS07 CU ? N/A Q9RRB6 36502921
    5964 8acq:H (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5965 8acq:I (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5966 8acq:L (2.54) BS01 CU ? N/A Q9RWM2 36502921
    5967 8agd:A (3.5) BS04 CU ? N/A Q9RRB6 36502921
    5968 8agd:A (3.5) BS05 CU ? N/A Q9RRB6 36502921
    5969 8agd:A (3.5) BS06 CU ? N/A Q9RRB6 36502921
    5970 8agd:B (3.5) BS05 CU ? N/A Q9RRB6 36502921
    5971 8agd:B (3.5) BS06 CU ? N/A Q9RRB6 36502921
    5972 8agd:B (3.5) BS07 CU ? N/A Q9RRB6 36502921
    5973 8agd:C (3.5) BS05 CU ? N/A Q9RRB6 36502921
    5974 8agd:C (3.5) BS06 CU ? N/A Q9RRB6 36502921
    5975 8agd:C (3.5) BS07 CU ? N/A Q9RRB6 36502921
    5976 8agd:H (3.5) BS01 CU ? N/A Q9RWM2 36502921
    5977 8agd:I (3.5) BS01 CU ? N/A Q9RWM2 36502921
    5978 8agd:L (3.5) BS01 CU ? N/A Q9RWM2 36502921
    5979 8aip:A (2.35) BS01 CU N/A GO:0005507 ... N/A 38105031
    5980 8aip:A (2.35) BS02 CU N/A GO:0005507 ... N/A 38105031
    5981 8ajz:A (2.0) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 38064560
    5982 8b4g:AAA (1.496) BS01 CU 3.2.1.4 GO:0004497 ... G3XAP7 N/A
    5983 8b6h:DA (2.6) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    5984 8b6h:Da (2.6) BS03 CU 7.1.1.9 GO:0004129 ... Q950Y4 36949187
    5985 8b7p:AAA (2.11) BS01 CU 3.2.1.4 GO:0003674 ... Q5AZ52 N/A
    5986 8b7p:BBB (2.11) BS01 CU 3.2.1.4 GO:0003674 ... Q5AZ52 N/A
    5987 8b7p:CCC (2.11) BS01 CU 3.2.1.4 GO:0003674 ... Q5AZ52 N/A
    5988 8b7p:DDD (2.11) BS01 CU 3.2.1.4 GO:0003674 ... Q5AZ52 N/A
    5989 8bbq:A (1.43) BS01 CU N/A GO:0016491 ... N/A 37759761
    5990 8bbq:A (1.43) BS02 CU N/A GO:0016491 ... N/A 37759761
    5991 8bbq:B (1.43) BS01 CU N/A GO:0016491 ... N/A 37759761
    5992 8bbq:B (1.43) BS02 CU N/A GO:0016491 ... N/A 37759761
    5993 8bbr:A (1.64) BS01 CU N/A GO:0016491 ... N/A 37759761
    5994 8bbr:A (1.64) BS02 CU N/A GO:0016491 ... N/A 37759761
    5995 8bbr:B (1.64) BS01 CU N/A GO:0016491 ... N/A 37759761
    5996 8bbr:B (1.64) BS02 CU N/A GO:0016491 ... N/A 37759761
    5997 8bpn:A (1.99) BS01 CU ? N/A W0DP94 N/A
    5998 8bpn:A (1.99) BS02 CU ? N/A W0DP94 N/A
    5999 8bpn:B (1.99) BS01 CU ? N/A W0DP94 N/A
    6000 8bpn:B (1.99) BS02 CU ? N/A W0DP94 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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