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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2801 4gxf:B (2.734) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    2802 4gxf:B (2.734) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    2803 4gxf:B (2.734) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    2804 4gxf:C (2.734) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    2805 4gxf:C (2.734) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    2806 4gxf:C (2.734) BS05 CU ? GO:0005507 ... Q9XAL8 23094962
    2807 4gxf:C (2.734) BS06 CU ? GO:0005507 ... Q9XAL8 23094962
    2808 4gy4:A (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    2809 4gy4:A (2.67) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    2810 4gy4:A (2.67) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    2811 4gy4:B (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    2812 4gy4:B (2.67) BS02 CU ? GO:0005507 ... Q9XAL8 23094962
    2813 4gy4:B (2.67) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    2814 4gy4:B (2.67) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    2815 4gy4:C (2.67) BS01 CU ? GO:0005507 ... Q9XAL8 23094962
    2816 4gy4:C (2.67) BS03 CU ? GO:0005507 ... Q9XAL8 23094962
    2817 4gy4:C (2.67) BS04 CU ? GO:0005507 ... Q9XAL8 23094962
    2818 4gy4:C (2.67) BS05 CU ? GO:0005507 ... Q9XAL8 23094962
    2819 4gyb:A (2.4) BS01 CU ? GO:0005507 ... D6EFA0 N/A
    2820 4gyb:A (2.4) BS02 CU ? GO:0005507 ... D6EFA0 N/A
    2821 4gyb:A (2.4) BS03 CU ? GO:0005507 ... D6EFA0 N/A
    2822 4h7l:A (2.452) BS01 CU ? GO:0046872 ... D5SZ58 N/A
    2823 4h7l:B (2.452) BS01 CU ? GO:0046872 ... D5SZ58 N/A
    2824 4hak:A (1.4) BS01 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2825 4hak:A (1.4) BS02 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2826 4hak:A (1.4) BS03 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2827 4hak:A (1.4) BS04 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2828 4hal:A (1.4) BS01 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2829 4hal:A (1.4) BS02 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2830 4hal:A (1.4) BS03 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2831 4hal:A (1.4) BS04 CU 1.16.3.4 GO:0004322 ... P36649 N/A
    2832 4hcf:A (1.703) BS01 CU ? N/A A0A6L7H6L8 N/A
    2833 4hcf:B (1.703) BS01 CU ? N/A A0A6L7H6L8 N/A
    2834 4hd4:A (1.8) BS01 CU ? GO:0016491 ... B2ZB02 23305929
    2835 4hd4:B (1.8) BS01 CU ? GO:0016491 ... B2ZB02 23305929
    2836 4hd6:A (2.0) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2837 4hd6:A (2.0) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2838 4hd6:B (2.0) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2839 4hd6:B (2.0) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2840 4hd7:A (2.1) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2841 4hd7:A (2.1) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2842 4hd7:B (2.1) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2843 4hd7:B (2.1) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 23305929
    2844 4hhg:A (1.6) BS01 CU ? GO:0005507 ... P00282 23859602
    2845 4hhw:A (2.0) BS01 CU ? GO:0005507 ... P00282 23859602
    2846 4hhw:B (2.0) BS01 CU ? GO:0005507 ... P00282 23859602
    2847 4hip:A (1.9) BS01 CU ? GO:0005507 ... P00282 23859602
    2848 4hip:B (1.9) BS01 CU ? GO:0005507 ... P00282 23859602
    2849 4hu7:A (1.4) BS01 CU ? GO:0005515 ... P0AA25 23712956
    2850 4hu7:B (1.4) BS01 CU ? GO:0005515 ... P0AA25 23712956
    2851 4hu9:A (1.55) BS01 CU ? GO:0005515 ... P0AA25 23712956
    2852 4hua:A (1.1) BS01 CU ? GO:0005515 ... P0AA25 23712956
    2853 4hvo:A (1.75) BS01 CU 1.13.11.6 GO:0000334 ... Q1LCS4 25918158
    2854 4j3p:A (2.5) BS01 CU 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    2855 4j3p:A (2.5) BS02 CU 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    2856 4j3q:A (2.9) BS01 CU 1.10.3.1 GO:0016491 ... Q2UNF9 24043469
    2857 4j3q:A (2.9) BS02 CU 1.10.3.1 GO:0016491 ... Q2UNF9 24043469
    2858 4j3q:B (2.9) BS01 CU 1.10.3.1 GO:0016491 ... Q2UNF9 24043469
    2859 4j3q:B (2.9) BS02 CU 1.10.3.1 GO:0016491 ... Q2UNF9 24043469
    2860 4j3r:A (2.2) BS01 CU 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    2861 4j3r:A (2.2) BS02 CU 1.10.3.1 GO:0004097 ... Q2UNF9 24043469
    2862 4j6t:A (2.43) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2863 4j6t:A (2.43) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2864 4j6t:B (2.43) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2865 4j6t:B (2.43) BS02 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2866 4j6v:A (1.9) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2867 4j6v:B (1.9) BS01 CU 1.14.18.1 GO:0016491 ... B2ZB02 24061559
    2868 4jfn:A (1.75) BS01 CU ? GO:0008201 ... P05067 25122912
    2869 4jhu:A (1.89) BS01 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2870 4jhu:A (1.89) BS02 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2871 4jhu:A (1.89) BS03 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2872 4jhu:A (1.89) BS04 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2873 4jhu:A (1.89) BS05 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2874 4jhv:A (1.6) BS01 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2875 4jhv:A (1.6) BS02 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2876 4jhv:A (1.6) BS03 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2877 4jhv:A (1.6) BS04 CU 1.10.3.2 GO:0005507 ... M1GME7 25849396
    2878 4k9j:A (1.7) BS01 CU ? GO:0005507 ... P00282 24032375
    2879 4kav:A (1.433) BS02 CU 3.1.3.27 GO:0016772 ... Q7DD94 23810904
    2880 4kfd:A (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2881 4kfd:B (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2882 4kfd:C (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2883 4kfd:D (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2884 4kfd:E (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2885 4kfd:F (1.69) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2886 4kfe:A (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2887 4kfe:B (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2888 4kfe:C (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2889 4kfe:D (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2890 4kfe:E (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2891 4kfe:F (2.1) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2892 4kff:A (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2893 4kff:B (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2894 4kff:C (2.15) BS01 CU 1.4.3.21 GO:0005507 ... P12807 N/A
    2895 4kns:A (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2896 4kns:A (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2897 4kns:B (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2898 4kns:B (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2899 4kns:C (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2900 4kns:C (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2901 4kns:D (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2902 4kns:D (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2903 4kns:E (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2904 4kns:E (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2905 4kns:F (2.2) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2906 4kns:F (2.2) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2907 4knt:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2908 4knt:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2909 4knt:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2910 4knt:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2911 4knt:C (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2912 4knt:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2913 4knu:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2914 4knu:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2915 4knu:B (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2916 4knu:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2917 4knu:C (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2918 4knu:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2919 4knu:D (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2920 4knu:D (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2921 4knu:E (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2922 4knu:E (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2923 4knu:F (1.8) BS01 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2924 4knu:F (1.8) BS02 CU 1.7.2.1 GO:0005507 ... Q82VX5 23857587
    2925 4ko5:A (1.79) BS01 CU ? GO:0005507 ... P00282 N/A
    2926 4ko5:B (1.79) BS01 CU ? GO:0005507 ... P00282 N/A
    2927 4ko6:A (1.738) BS01 CU ? GO:0005507 ... P00282 N/A
    2928 4ko6:B (1.738) BS01 CU ? GO:0005507 ... P00282 N/A
    2929 4ko6:C (1.738) BS01 CU ? GO:0005507 ... P00282 N/A
    2930 4ko6:D (1.738) BS01 CU ? GO:0005507 ... P00282 N/A
    2931 4ko7:A (2.07) BS01 CU ? GO:0005507 ... P00282 N/A
    2932 4ko7:B (2.07) BS01 CU ? GO:0005507 ... P00282 N/A
    2933 4ko7:C (2.07) BS01 CU ? GO:0005507 ... P00282 N/A
    2934 4ko7:D (2.07) BS01 CU ? GO:0005507 ... P00282 N/A
    2935 4ko9:A (2.054) BS01 CU ? GO:0005507 ... P00282 N/A
    2936 4ko9:B (2.054) BS01 CU ? GO:0005507 ... P00282 N/A
    2937 4ko9:C (2.054) BS01 CU ? GO:0005507 ... P00282 N/A
    2938 4ko9:D (2.054) BS01 CU ? GO:0005507 ... P00282 N/A
    2939 4kob:A (1.867) BS01 CU ? GO:0005507 ... P00282 N/A
    2940 4kob:B (1.867) BS01 CU ? GO:0005507 ... P00282 N/A
    2941 4kob:C (1.867) BS01 CU ? GO:0005507 ... P00282 N/A
    2942 4kob:D (1.867) BS01 CU ? GO:0005507 ... P00282 N/A
    2943 4koc:A (1.459) BS01 CU ? GO:0005507 ... P00282 N/A
    2944 4l05:A (1.098) BS02 CU 1.15.1.1 GO:0004784 ... P15453 26459556
    2945 4lej:A (2.402) BS01 CU ? GO:0005507 ... V9VGU0 24328105
    2946 4lsy:B (1.895) BS01 CU ? GO:0004521 ... O25554 24060809
    2947 4m3h:A (2.2) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2948 4m3h:A (2.2) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2949 4m3h:A (2.2) BS03 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2950 4m3h:A (2.2) BS04 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2951 4m3h:B (2.2) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2952 4m3h:B (2.2) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2953 4m3h:B (2.2) BS04 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2954 4m3h:B (2.2) BS05 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2955 4m3h:C (2.2) BS01 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2956 4m3h:C (2.2) BS02 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2957 4m3h:C (2.2) BS03 CU 1.10.3.2 GO:0005507 ... B5HSR1 24548692
    2958 4mfh:A (1.54) BS01 CU ? GO:0005507 ... P00282 24390543
    2959 4mfh:B (1.54) BS01 CU ? GO:0005507 ... P00282 24390543
    2960 4mfh:C (1.54) BS01 CU ? GO:0005507 ... P00282 24390543
    2961 4mnt:A (1.584) BS01 CU 3.1.2.-
    3.5.1.-
    3.5.1.124
    GO:0000785 ... Q99497 24567322
    2962 4n0m:A (1.95) BS01 CU 3.1.2.-
    3.5.1.-
    3.5.1.124
    GO:0000785 ... Q99497 24567322
    2963 4n3u:A (1.75) BS01 CU 1.15.1.1 GO:0005507 ... Q5AD07 24711423
    2964 4n4y:A (2.9) BS01 CU 7.1.1.9 GO:0004129 ... Q5SJ79 N/A
    2965 4n8u:A (2.4) BS01 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2966 4n8u:A (2.4) BS02 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2967 4n8u:A (2.4) BS03 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2968 4n8u:B (2.4) BS01 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2969 4n8u:B (2.4) BS02 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2970 4n8u:B (2.4) BS03 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2971 4n8u:C (2.4) BS01 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2972 4n8u:C (2.4) BS02 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2973 4n8u:C (2.4) BS03 CU 1.10.3.2 GO:0005507 ... J9S5G3 N/A
    2974 4naj:A (2.6) BS01 CU 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    2975 4naj:A (2.6) BS02 CU 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    2976 4nb7:A (2.55) BS01 CU 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    2977 4nb7:A (2.55) BS02 CU 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    2978 4ner:A (1.6) BS01 CU 1.16.3.4 GO:0004322 ... P36649 24598746
    2979 4ner:A (1.6) BS02 CU 1.16.3.4 GO:0004322 ... P36649 24598746
    2980 4ner:A (1.6) BS03 CU 1.16.3.4 GO:0004322 ... P36649 24598746
    2981 4ner:A (1.6) BS04 CU 1.16.3.4 GO:0004322 ... P36649 24598746
    2982 4nun:A (2.2) BS01 CU ? GO:0005576 ... J9ULM6 24631931
    2983 4o65:A (1.796) BS01 CU ? N/A B0LKZ4 24523098
    2984 4oak:A (2.0) BS01 CU ? GO:0004180 ... Q9JN36 24711382
    2985 4oak:B (2.0) BS01 CU ? GO:0004180 ... Q9JN36 24711382
    2986 4oh2:A (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2987 4oh2:B (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2988 4oh2:C (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2989 4oh2:D (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2990 4oh2:E (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2991 4oh2:F (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2992 4oh2:G (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2993 4oh2:H (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2994 4oh2:I (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2995 4oh2:J (2.384) BS01 CU 1.15.1.1 GO:0000302 ... P00441 25296320
    2996 4oja:A (2.277) BS01 CU 1.15.1.1 GO:0004784 ... I3V7W8 N/A
    2997 4opb:A (1.5) BS01 CU ? N/A Q2U8Y3 25608804
    2998 4oy6:A (1.29) BS01 CU ? N/A Q9RJC1 24912171
    2999 4oy7:A (1.5) BS01 CU ? N/A Q9RJY2 24912171
    3000 4oy7:B (1.5) BS01 CU ? N/A Q9RJY2 24912171

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218