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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 6639 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 3fpx:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    1802 3fpx:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    1803 3fpx:A (1.8) BS04 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    1804 3fpx:A (1.8) BS05 CU 1.10.3.2 GO:0005507 ... B2L9C1 N/A
    1805 3fpy:A (2.1) BS01 CU ? GO:0005507 ... P00282 20305734
    1806 3fq1:A (1.9) BS01 CU ? GO:0005507 ... P00282 20305734
    1807 3fq2:A (1.91) BS01 CU ? GO:0005507 ... P00282 20305734
    1808 3fqy:A (1.9) BS01 CU ? GO:0005507 ... P00282 20305734
    1809 3fs9:A (1.05) BS01 CU ? GO:0005507 ... P00282 19299503
    1810 3fsv:A (2.3) BS01 CU ? GO:0005507 ... P00282 19299503
    1811 3fsw:A (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1812 3fsw:B (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1813 3fsw:C (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1814 3fsw:D (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1815 3fsz:A (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1816 3fsz:B (2.0) BS01 CU ? GO:0005507 ... P00282 19299503
    1817 3fu7:A (1.67) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1818 3fu7:A (1.67) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1819 3fu7:A (1.67) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1820 3fu7:A (1.67) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1821 3fu7:B (1.67) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1822 3fu7:B (1.67) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1823 3fu7:B (1.67) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1824 3fu7:B (1.67) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1825 3fu8:A (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1826 3fu8:A (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1827 3fu8:A (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1828 3fu8:A (1.8) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1829 3fu8:B (1.8) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1830 3fu8:B (1.8) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1831 3fu8:B (1.8) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1832 3fu8:B (1.8) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1833 3fu9:A (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1834 3fu9:A (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1835 3fu9:A (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1836 3fu9:A (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1837 3fu9:B (2.0) BS01 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1838 3fu9:B (2.0) BS02 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1839 3fu9:B (2.0) BS03 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1840 3fu9:B (2.0) BS04 CU 1.10.3.2 GO:0005507 ... Q70KY3 19563811
    1841 3g5w:A (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1842 3g5w:B (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1843 3g5w:C (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1844 3g5w:D (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1845 3g5w:E (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1846 3g5w:F (1.9) BS01 CU ? GO:0005507 ... Q82VX3 19224923
    1847 3gdc:A (1.8) BS01 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1848 3gdc:A (1.8) BS02 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1849 3gdc:A (1.8) BS03 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1850 3gdc:B (1.8) BS01 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1851 3gdc:B (1.8) BS02 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1852 3gdc:B (1.8) BS03 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1853 3gdc:C (1.8) BS01 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1854 3gdc:C (1.8) BS02 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1855 3gdc:C (1.8) BS03 CU 1.7.2.1 GO:0005507 ... A0AW19 N/A
    1856 3gyr:A (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1857 3gyr:A (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1858 3gyr:A (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1859 3gyr:B (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1860 3gyr:B (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1861 3gyr:B (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1862 3gyr:C (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1863 3gyr:C (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1864 3gyr:C (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1865 3gyr:D (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1866 3gyr:D (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1867 3gyr:D (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1868 3gyr:E (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1869 3gyr:E (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1870 3gyr:E (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1871 3gyr:F (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1872 3gyr:F (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1873 3gyr:F (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1874 3gyr:G (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1875 3gyr:G (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1876 3gyr:G (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1877 3gyr:H (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1878 3gyr:H (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1879 3gyr:H (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1880 3gyr:I (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1881 3gyr:I (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1882 3gyr:I (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1883 3gyr:J (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1884 3gyr:J (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1885 3gyr:J (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1886 3gyr:K (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1887 3gyr:K (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1888 3gyr:K (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1889 3gyr:L (2.3) BS01 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1890 3gyr:L (2.3) BS02 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1891 3gyr:L (2.3) BS03 CU 1.10.3.4 GO:0005507 ... Q53692 16584173
    1892 3gzo:A (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1893 3gzo:B (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1894 3gzo:C (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1895 3gzo:D (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1896 3gzo:E (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1897 3gzo:F (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1898 3gzo:G (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1899 3gzo:H (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1900 3gzo:I (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1901 3gzo:J (2.1) BS01 CU 1.15.1.1 GO:0000302 ... P00441 19800308
    1902 3h4f:A (2.1) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1903 3h4f:A (2.1) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1904 3h4f:B (2.1) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1905 3h4f:B (2.1) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1906 3h4f:C (2.1) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1907 3h4f:C (2.1) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1908 3h4h:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1909 3h4h:A (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1910 3h4h:B (1.6) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1911 3h4h:B (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1912 3h4h:C (1.6) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1913 3h4h:C (1.6) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1914 3h56:A (1.5) BS01 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1915 3h56:A (1.5) BS02 CU 1.7.2.1 GO:0005507 ... P38501 20083495
    1916 3hhs:A (1.97) BS01 CU 1.14.18.1 GO:0004497 ... Q25519 19805072
    1917 3hhs:A (1.97) BS02 CU 1.14.18.1 GO:0004497 ... Q25519 19805072
    1918 3hhs:B (1.97) BS01 CU 1.14.18.1 GO:0004497 ... O44249 19805072
    1919 3hhs:B (1.97) BS02 CU 1.14.18.1 GO:0004497 ... O44249 19805072
    1920 3hi7:A (1.799) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1921 3hi7:B (1.799) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1922 3hig:A (2.09) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1923 3hig:B (2.09) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1924 3hii:A (2.149) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1925 3hii:B (2.149) BS01 CU 1.4.3.22 GO:0005507 ... P19801 19764817
    1926 3hnl:A (2.2) BS02 CU ? GO:0005506 ... P0ABE7 20080561
    1927 3hnl:B (2.2) BS02 CU ? GO:0005506 ... P0ABE7 20080561
    1928 3hw7:B (2.0) BS02 CU 1.15.1.1 GO:0000209 ... P00442 20516618
    1929 3ibo:A (1.45) BS01 CU ? GO:0005507 ... P00282 19639996
    1930 3ibo:B (1.45) BS01 CU ? GO:0005507 ... P00282 19639996
    1931 3ibo:C (1.45) BS01 CU ? GO:0005507 ... P00282 19639996
    1932 3ibo:D (1.45) BS01 CU ? GO:0005507 ... P00282 19639996
    1933 3ie9:A (2.1) BS01 CU ? GO:0005507 ... P22364 19715303
    1934 3iea:A (2.2) BS01 CU ? GO:0005507 ... P22364 19715303
    1935 3in0:A (2.35) BS01 CU ? GO:0005507 ... P00282 19890331
    1936 3in0:B (2.35) BS01 CU ? GO:0005507 ... P00282 19890331
    1937 3in0:C (2.35) BS01 CU ? GO:0005507 ... P00282 19890331
    1938 3in0:D (2.35) BS01 CU ? GO:0005507 ... P00282 19890331
    1939 3in2:A (2.6) BS01 CU ? GO:0005507 ... P00282 19890331
    1940 3iud:A (2.44) BS01 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1941 3iud:A (2.44) BS02 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1942 3iud:B (2.44) BS01 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1943 3iud:B (2.44) BS02 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1944 3iud:C (2.44) BS01 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1945 3iud:C (2.44) BS02 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1946 3iud:D (2.44) BS01 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1947 3iud:D (2.44) BS02 CU 5.3.1.14 GO:0016853 ... Q75WH8 20088877
    1948 3j2q:A (15.0) BS01 CU ? GO:0005507 ... P00451 23616213
    1949 3j2q:B (15.0) BS01 CU ? GO:0005507 ... P00451 23616213
    1950 3jt2:A (2.1) BS01 CU ? GO:0005507 ... P00282 19890331
    1951 3jt2:B (2.1) BS01 CU ? GO:0005507 ... P00282 19890331
    1952 3jtb:A (1.8) BS01 CU ? GO:0005507 ... P00282 19890331
    1953 3jtb:B (1.8) BS01 CU ? GO:0005507 ... P00282 19890331
    1954 3jtb:C (1.8) BS01 CU ? GO:0005507 ... P00282 19890331
    1955 3jtb:D (1.8) BS01 CU ? GO:0005507 ... P00282 19890331
    1956 3k5t:A (2.11) BS01 CU 1.4.3.22 GO:0005507 ... P19801 20124708
    1957 3k7r:J (2.28) BS01 CU ? GO:0005737 ... P38636 19965379
    1958 3kbf:A (1.3) BS01 CU 1.15.1.1 GO:0004784 ... P34697 N/A
    1959 3kh3:A (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1960 3kh3:B (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1961 3kh3:C (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1962 3kh3:D (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1963 3kh3:E (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1964 3kh3:F (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1965 3kh3:G (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1966 3kh3:H (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1967 3kh3:I (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1968 3kh3:J (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1969 3kh3:K (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1970 3kh3:L (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1971 3kh4:A (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1972 3kh4:B (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1973 3kh4:C (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1974 3kh4:D (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1975 3kh4:E (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1976 3kh4:F (3.5) BS01 CU 1.15.1.1 GO:0000302 ... P00441 20693657
    1977 3kii:A (1.9) BS01 CU 1.4.3.21 GO:0005507 ... P46881 N/A
    1978 3kii:B (1.9) BS01 CU 1.4.3.21 GO:0005507 ... P46881 N/A
    1979 3kn4:A (2.05) BS01 CU 1.4.3.21 GO:0005507 ... P46881 N/A
    1980 3kw7:A (3.44) BS01 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1981 3kw7:A (3.44) BS02 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1982 3kw7:A (3.44) BS03 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1983 3kw7:A (3.44) BS04 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1984 3kw7:B (3.44) BS01 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1985 3kw7:B (3.44) BS02 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1986 3kw7:B (3.44) BS03 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1987 3kw7:B (3.44) BS04 CU 1.10.3.2 GO:0005507 ... Q5I7J0 20208154
    1988 3kw8:A (2.29) BS01 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    1989 3kw8:A (2.29) BS02 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    1990 3kw8:A (2.29) BS03 CU 1.10.3.2 GO:0005507 ... Q9XAL8 21206017
    1991 3l45:A (1.5) BS01 CU ? GO:0042597 ... P22364 20351252
    1992 3l9y:A (1.8) BS02 CU 1.15.1.1 GO:0004784 ... P82205 20310068
    1993 3l9y:B (1.8) BS02 CU 1.15.1.1 GO:0004784 ... P82205 20310068
    1994 3loy:A (2.0) BS01 CU N/A GO:0005507 ... N/A 20155950
    1995 3loy:B (2.0) BS01 CU N/A GO:0005507 ... N/A 20155950
    1996 3loy:C (2.0) BS01 CU N/A GO:0005507 ... N/A 20155950
    1997 3lzl:A (1.45) BS01 CU ? GO:0046872 ... A0A0H3PA01 20600116
    1998 3lzl:B (1.45) BS01 CU ? GO:0046872 ... A0A0H3PA01 20600116
    1999 3lzo:A (1.65) BS01 CU ? GO:0046872 ... A0A0H3PA01 20600116
    2000 3lzo:B (1.65) BS01 CU ? GO:0046872 ... A0A0H3PA01 20600116

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218