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BioLiP
Download all results in tab-seperated text for 699 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7rnl:P (3.7) BS02 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    602 7rnl:P (3.7) BS03 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    603 7rnl:P (3.7) BS04 CTP 6.3.4.2 GO:0003883 ... N/A 34734801
    604 7t1b:A (1.75) BS03 CTP 2.7.7.- GO:0003684 ... P12689 35610266
    605 7uoe:A (2.67) BS07 CTP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 36725929
    606 7w9s:A (2.53) BS03 CTP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... E5RPG3 36477355
    607 7xd9:A (2.58) BS06 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    608 7xd9:D (2.58) BS06 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    609 7xd9:G (2.58) BS07 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    610 7xd9:J (2.58) BS07 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    611 7xd9:M (2.58) BS07 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    612 7xd9:P (2.58) BS07 CTP 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... Q91H74 36577062
    613 8at1:B (2.8) BS02 CTP ? GO:0005515 ... P0A7F3 2271529
    614 8at1:D (2.8) BS02 CTP ? GO:0005515 ... P0A7F3 2271529
    615 8b67:A (2.6) BS06 CTP 2.7.7.7
    3.1.11.-    		 GO:0000166 ... P21951 37819038
    616 8fvb:AAA (2.03) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    617 8fvb:AAA (2.03) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    618 8fvb:BBB (2.03) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    619 8fvb:BBB (2.03) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    620 8fve:A (2.4) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    621 8fve:A (2.4) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    622 8fve:B (2.4) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    623 8fve:B (2.4) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    624 8gzh:C (2.96) BS04 CTP 2.7.7.6 GO:0000428 ... P77965 N/A
    625 8gzh:D (2.96) BS05 CTP 2.7.7.6 GO:0000287 ... P74177 N/A
    626 8gzh:Z (2.96) BS04 CTP 2.7.7.6 GO:0000428 ... P73334 N/A
    627 8i9o:A (2.9) BS03 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    628 8i9o:A (2.9) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    629 8i9o:A (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    630 8i9o:B (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    631 8i9o:B (2.9) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    632 8i9o:B (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    633 8i9o:C (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    634 8i9o:C (2.9) BS04 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    635 8i9o:C (2.9) BS05 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    636 8i9o:D (2.9) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    637 8i9o:D (2.9) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    638 8i9o:D (2.9) BS03 CTP 6.3.4.2 GO:0000287 ... P0A7E5 38948148
    639 8k8u:A (3.05) BS05 CTP N/A GO:0003677 ... A0A7H0DN44 38579705
    640 8ow5:A (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    641 8ow5:A (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    642 8ow5:B (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    643 8ow5:B (2.84) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    644 8ow5:C (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    645 8ow5:D (2.84) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    646 8ow5:D (2.84) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    647 8owb:A (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    648 8owb:B (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    649 8owb:B (2.25) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    650 8owb:C (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    651 8owb:D (2.25) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    652 8owp:A (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    653 8owp:B (1.993) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    654 8owp:C (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    655 8owp:D (1.993) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    656 8owq:A (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    657 8owq:B (2.106) BS03 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    658 8owq:C (2.106) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    659 8owq:D (2.106) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    660 8owr:A (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    661 8owr:B (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    662 8owr:B (2.439) BS02 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    663 8owr:C (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    664 8owr:D (2.439) BS01 CTP 4.1.1.36
    6.3.2.5    		 N/A A0QWT2 N/A
    665 8p23:B (3.17) BS01 CTP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    666 8qa8:A (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    667 8qa8:A (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    668 8qa8:B (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    669 8qa8:B (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    670 8qa8:C (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    671 8qa8:C (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    672 8qa8:D (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    673 8qa8:D (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    674 8qa8:E (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    675 8qa8:E (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    676 8qa8:F (2.3) BS01 CTP ? GO:0003677 ... P07674 N/A
    677 8qa8:F (2.3) BS02 CTP ? GO:0003677 ... P07674 N/A
    678 8sbr:A (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    679 8sbr:A (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    680 8sbr:B (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    681 8sbr:B (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    682 8uks:A (3.4) BS07 CTP 2.7.7.6 GO:0000428 ... P04050 38393762
    683 8uks:B (3.4) BS03 CTP 2.7.7.6 GO:0000428 ... P08518 38393762
    684 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    685 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    686 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    687 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    688 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    689 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    690 8xhr:A (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    691 8xhr:B (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    692 8xhr:C (2.1) BS01 CTP ? GO:0000166 ... P96356 38485701
    693 8xkf:A (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    694 8xkf:B (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    695 8xkf:C (2.5) BS02 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    696 8xkf:D (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    697 8xkf:E (2.5) BS01 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    698 8xkf:F (2.5) BS02 CTP 2.7.7.60
    4.6.1.12    		 GO:0003824 ... O25664 38537721
    699 9f37:B (1.905) BS03 CTP N/A N/A H6QM91 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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