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BioLiP
Download all results in tab-seperated text for 20 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1fpm:A (3.0) BS01 CS 6.3.4.3 GO:0004329 ... P21164 11087401
    2 1fpm:B (3.0) BS01 CS 6.3.4.3 GO:0004329 ... P21164 11087401
    3 1gqt:A (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    4 1gqt:B (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    5 1gqt:C (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    6 1gqt:D (2.34) BS01 CS 2.7.1.15 GO:0004747 ... P0A9J6 11786021
    7 1kh8:A (2.0) BS01 CS 4.6.1.18 GO:0003676 ... P61823 16199662
    8 5zdk:A (2.45) BS02 CS 6.1.1.18 GO:0000166 ... Q5SKU4 30248426
    9 7bmp:A (1.9) BS05 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    10 7bmp:A (1.9) BS06 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    11 7bmq:A (1.79) BS01 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    12 7bmq:A (1.79) BS02 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    13 7bmq:A (1.79) BS03 CS 3.2.1.17 GO:0003796 ... P00698 34426585
    14 7bmu:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    15 7bmv:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    16 7bmw:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    17 7bmw:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    18 7bmx:A (1.9) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    19 7bmx:A (1.9) BS02 CS ? GO:0000439 ... G0RZ08 34426585
    20 7bmy:A (1.8) BS01 CS ? GO:0000439 ... G0RZ08 34426585
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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