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BioLiP
Download all results in tab-seperated text for 5 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1o2r:A (1.45) BS02 CR9 3.4.21.4 GO:0004175 ... P00760 12742021 PDBbind: -logKd/Ki=5.21, Ki=6.1uM
    2 1o5c:B (1.63) BS02 CR9 3.4.21.73 GO:0004252 ... P00749 15522303 MOAD: Ki=6uM
    PDBbind: -logKd/Ki=5.22, Ki=6.0uM
    BindingDB: Ki=30nM
    3 1o5d:H (2.05) BS01 CR9 3.4.21.21 GO:0004252 ... P08709 15522303
    4 1o5f:H (1.78) BS01 CR9 3.4.21.106 GO:0004252 ... P05981 15522303 PDBbind: -logKd/Ki=6.07, Ki=0.85uM
    BindingDB: Ki=850nM
    5 1o5g:H (1.75) BS02 CR9 3.4.21.5 GO:0004252 ... P00734 15522303 MOAD: Ki=11uM
    PDBbind: -logKd/Ki=4.96, Ki=11uM
    BindingDB: Ki=11000nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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