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BioLiP
Download all results in tab-seperated text for 52 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2aeo:A (1.8) BS03 CPT 1.15.1.1 GO:0000209 ... P00442 16416478
    2 2aeo:B (1.8) BS03 CPT 1.15.1.1 GO:0000209 ... P00442 16416478
    3 3iwx:A (2.14) BS01 CPT ? GO:0005507 ... O00244 19807176
    4 3iwx:B (2.14) BS01 CPT ? GO:0005507 ... O00244 19807176
    5 3txg:A (1.7) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23396873
    6 3txg:A (1.7) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 23396873
    7 3txk:A (3.0) BS03 CPT 3.2.1.17 GO:0003796 ... P00698 23396873
    8 4ddb:A (3.0) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 22525758
    9 4ddc:A (1.8) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 22525758
    10 4ddc:A (1.8) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 22525758
    11 4ddc:B (1.8) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 22525758
    12 4ddc:B (1.8) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 22525758
    13 4g49:A (2.4) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23143236
    14 4g4b:A (2.1) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23143236
    15 4g4b:A (2.1) BS03 CPT 3.2.1.17 GO:0003796 ... P00698 23143236
    16 4gcb:A (1.8) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    17 4gcb:A (1.8) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    18 4gcc:A (2.0) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    19 4gcd:A (2.8) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    20 4gcd:A (2.8) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    21 4gce:A (2.9) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    22 4gce:A (2.9) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 23275170
    23 4n11:A (1.97) BS01 CPT 1.20.4.1 GO:0015038 ... Q9NLB2 N/A
    24 4ot4:A (1.85) BS01 CPT 4.6.1.18 GO:0003676 ... P61823 24694179
    25 4ot4:A (1.85) BS02 CPT 4.6.1.18 GO:0003676 ... P61823 24694179
    26 4ot4:B (1.85) BS01 CPT 4.6.1.18 GO:0003676 ... P61823 24694179
    27 4rsz:A (2.19) BS02 CPT ? GO:0005515 ... P00004 25567806
    28 4rsz:B (2.19) BS02 CPT ? GO:0005515 ... P00004 25567806
    29 4rsz:D (2.19) BS02 CPT ? GO:0005515 ... P00004 25567806
    30 4rsz:F (2.19) BS02 CPT ? GO:0005515 ... P00004 25567806
    31 4rte:A (1.95) BS01 CPT 4.6.1.18 GO:0003676 ... P61823 25756333
    32 4rte:A (1.95) BS02 CPT 4.6.1.18 GO:0003676 ... P61823 25756333
    33 4z46:A (1.85) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 25974859
    34 4zee:A (1.95) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 25974859
    35 5erj:A (1.45) BS01 CPT ? GO:0005506 ... P02791 26888424
    36 5f9u:A (1.85) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    37 5f9u:A (1.85) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    38 5f9x:A (1.94) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    39 5f9x:A (1.94) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    40 5fcp:A (1.55) BS01 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    41 5fcp:A (1.55) BS02 CPT 3.2.1.17 GO:0003796 ... P00698 27040953
    42 5i0a:A (1.5) BS01 CPT 3.1.-.- GO:0016539 ... P9WHJ3 N/A
    43 5l4r:A (1.45) BS01 CPT ? GO:0005576 ... P02883 27482735
    44 5n26:A (2.05) BS01 CPT 1.16.3.1 GO:0004322 ... P02794 28737381
    45 5n26:A (2.05) BS03 CPT 1.16.3.1 GO:0004322 ... P02794 28737381
    46 7woj:A (2.89) BS01 CPT ? GO:0005615 ... P02768 35788007
    47 7woj:A (2.89) BS02 CPT ? GO:0005615 ... P02768 35788007
    48 7woj:A (2.89) BS03 CPT ? GO:0005615 ... P02768 35788007
    49 7woj:A (2.89) BS04 CPT ? GO:0005615 ... P02768 35788007
    50 7wok:A (2.9) BS01 CPT ? GO:0005615 ... P02768 35788007
    51 7wok:B (2.9) BS01 CPT ? GO:0005615 ... P02768 35788007
    52 7wok:B (2.9) BS02 CPT ? GO:0005615 ... P02768 35788007
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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