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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 386 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 8cue:1M (3.2) BS01 CPL ? N/A P17792 36513067
    202 8cue:1M (3.2) BS02 CPL ? N/A P17792 36513067
    203 8cue:1N (3.2) BS01 CPL ? N/A P17792 36513067
    204 8cue:1N (3.2) BS02 CPL ? N/A P17792 36513067
    205 8cue:2A (3.2) BS01 CPL ? N/A P17792 36513067
    206 8cue:2B (3.2) BS01 CPL ? N/A P17792 36513067
    207 8cue:2B (3.2) BS02 CPL ? N/A P17792 36513067
    208 8cue:2C (3.2) BS01 CPL ? N/A P17792 36513067
    209 8cue:2C (3.2) BS02 CPL ? N/A P17792 36513067
    210 8cue:2D (3.2) BS01 CPL ? N/A P17792 36513067
    211 8cue:2D (3.2) BS02 CPL ? N/A P17792 36513067
    212 8cue:2E (3.2) BS01 CPL ? N/A P17792 36513067
    213 8cue:2E (3.2) BS02 CPL ? N/A P17792 36513067
    214 8cue:2F (3.2) BS01 CPL ? N/A P17792 36513067
    215 8cue:2F (3.2) BS02 CPL ? N/A P17792 36513067
    216 8cue:2G (3.2) BS01 CPL ? N/A P17792 36513067
    217 8cue:2G (3.2) BS02 CPL ? N/A P17792 36513067
    218 8cue:2H (3.2) BS01 CPL ? N/A P17792 36513067
    219 8cue:2H (3.2) BS02 CPL ? N/A P17792 36513067
    220 8cue:2I (3.2) BS01 CPL ? N/A P17792 36513067
    221 8cue:2I (3.2) BS02 CPL ? N/A P17792 36513067
    222 8cue:2J (3.2) BS01 CPL ? N/A P17792 36513067
    223 8cue:2J (3.2) BS02 CPL ? N/A P17792 36513067
    224 8cue:2K (3.2) BS01 CPL ? N/A P17792 36513067
    225 8cue:2K (3.2) BS02 CPL ? N/A P17792 36513067
    226 8cue:2L (3.2) BS01 CPL ? N/A P17792 36513067
    227 8cue:2L (3.2) BS02 CPL ? N/A P17792 36513067
    228 8cue:2M (3.2) BS01 CPL ? N/A P17792 36513067
    229 8cue:2M (3.2) BS02 CPL ? N/A P17792 36513067
    230 8cue:2N (3.2) BS01 CPL ? N/A P17792 36513067
    231 8cue:2N (3.2) BS02 CPL ? N/A P17792 36513067
    232 8cue:3A (3.2) BS01 CPL ? N/A P17792 36513067
    233 8cue:3B (3.2) BS01 CPL ? N/A P17792 36513067
    234 8cue:3B (3.2) BS02 CPL ? N/A P17792 36513067
    235 8cue:3C (3.2) BS01 CPL ? N/A P17792 36513067
    236 8cue:3C (3.2) BS02 CPL ? N/A P17792 36513067
    237 8cue:3D (3.2) BS01 CPL ? N/A P17792 36513067
    238 8cue:3D (3.2) BS02 CPL ? N/A P17792 36513067
    239 8cue:3E (3.2) BS01 CPL ? N/A P17792 36513067
    240 8cue:3E (3.2) BS02 CPL ? N/A P17792 36513067
    241 8cue:3F (3.2) BS01 CPL ? N/A P17792 36513067
    242 8cue:3F (3.2) BS02 CPL ? N/A P17792 36513067
    243 8cue:3G (3.2) BS01 CPL ? N/A P17792 36513067
    244 8cue:3G (3.2) BS02 CPL ? N/A P17792 36513067
    245 8cue:3H (3.2) BS01 CPL ? N/A P17792 36513067
    246 8cue:3H (3.2) BS02 CPL ? N/A P17792 36513067
    247 8cue:3I (3.2) BS01 CPL ? N/A P17792 36513067
    248 8cue:3I (3.2) BS02 CPL ? N/A P17792 36513067
    249 8cue:3J (3.2) BS01 CPL ? N/A P17792 36513067
    250 8cue:3J (3.2) BS02 CPL ? N/A P17792 36513067
    251 8cue:3K (3.2) BS01 CPL ? N/A P17792 36513067
    252 8cue:3K (3.2) BS02 CPL ? N/A P17792 36513067
    253 8cue:3L (3.2) BS01 CPL ? N/A P17792 36513067
    254 8cue:3L (3.2) BS02 CPL ? N/A P17792 36513067
    255 8cue:3M (3.2) BS01 CPL ? N/A P17792 36513067
    256 8cue:3M (3.2) BS02 CPL ? N/A P17792 36513067
    257 8cue:3N (3.2) BS01 CPL ? N/A P17792 36513067
    258 8cue:3N (3.2) BS02 CPL ? N/A P17792 36513067
    259 8cue:4A (3.2) BS01 CPL ? N/A P17792 36513067
    260 8cue:4B (3.2) BS01 CPL ? N/A P17792 36513067
    261 8cue:4B (3.2) BS02 CPL ? N/A P17792 36513067
    262 8cue:4C (3.2) BS01 CPL ? N/A P17792 36513067
    263 8cue:4C (3.2) BS02 CPL ? N/A P17792 36513067
    264 8cue:4D (3.2) BS01 CPL ? N/A P17792 36513067
    265 8cue:4D (3.2) BS02 CPL ? N/A P17792 36513067
    266 8cue:4E (3.2) BS01 CPL ? N/A P17792 36513067
    267 8cue:4E (3.2) BS02 CPL ? N/A P17792 36513067
    268 8cue:4F (3.2) BS01 CPL ? N/A P17792 36513067
    269 8cue:4F (3.2) BS02 CPL ? N/A P17792 36513067
    270 8cue:4G (3.2) BS01 CPL ? N/A P17792 36513067
    271 8cue:4G (3.2) BS02 CPL ? N/A P17792 36513067
    272 8cue:4H (3.2) BS01 CPL ? N/A P17792 36513067
    273 8cue:4H (3.2) BS02 CPL ? N/A P17792 36513067
    274 8cue:4I (3.2) BS01 CPL ? N/A P17792 36513067
    275 8cue:4I (3.2) BS02 CPL ? N/A P17792 36513067
    276 8cue:4J (3.2) BS01 CPL ? N/A P17792 36513067
    277 8cue:4J (3.2) BS02 CPL ? N/A P17792 36513067
    278 8cue:4K (3.2) BS01 CPL ? N/A P17792 36513067
    279 8cue:4K (3.2) BS02 CPL ? N/A P17792 36513067
    280 8cue:4L (3.2) BS01 CPL ? N/A P17792 36513067
    281 8cue:4L (3.2) BS02 CPL ? N/A P17792 36513067
    282 8cue:4M (3.2) BS01 CPL ? N/A P17792 36513067
    283 8cue:4M (3.2) BS02 CPL ? N/A P17792 36513067
    284 8cue:4N (3.2) BS01 CPL ? N/A P17792 36513067
    285 8cue:4N (3.2) BS02 CPL ? N/A P17792 36513067
    286 8cue:5A (3.2) BS01 CPL ? N/A P17792 36513067
    287 8cue:5B (3.2) BS01 CPL ? N/A P17792 36513067
    288 8cue:5B (3.2) BS02 CPL ? N/A P17792 36513067
    289 8cue:5C (3.2) BS01 CPL ? N/A P17792 36513067
    290 8cue:5C (3.2) BS02 CPL ? N/A P17792 36513067
    291 8cue:5D (3.2) BS01 CPL ? N/A P17792 36513067
    292 8cue:5D (3.2) BS02 CPL ? N/A P17792 36513067
    293 8cue:5E (3.2) BS01 CPL ? N/A P17792 36513067
    294 8cue:5E (3.2) BS02 CPL ? N/A P17792 36513067
    295 8cue:5F (3.2) BS01 CPL ? N/A P17792 36513067
    296 8cue:5F (3.2) BS02 CPL ? N/A P17792 36513067
    297 8cue:5G (3.2) BS01 CPL ? N/A P17792 36513067
    298 8cue:5G (3.2) BS02 CPL ? N/A P17792 36513067
    299 8cue:5H (3.2) BS01 CPL ? N/A P17792 36513067
    300 8cue:5H (3.2) BS02 CPL ? N/A P17792 36513067
    301 8cue:5I (3.2) BS01 CPL ? N/A P17792 36513067
    302 8cue:5I (3.2) BS02 CPL ? N/A P17792 36513067
    303 8cue:5J (3.2) BS01 CPL ? N/A P17792 36513067
    304 8cue:5J (3.2) BS02 CPL ? N/A P17792 36513067
    305 8cue:5K (3.2) BS01 CPL ? N/A P17792 36513067
    306 8cue:5K (3.2) BS02 CPL ? N/A P17792 36513067
    307 8cue:5L (3.2) BS01 CPL ? N/A P17792 36513067
    308 8cue:5L (3.2) BS02 CPL ? N/A P17792 36513067
    309 8cue:5M (3.2) BS01 CPL ? N/A P17792 36513067
    310 8cue:5M (3.2) BS02 CPL ? N/A P17792 36513067
    311 8cue:5N (3.2) BS01 CPL ? N/A P17792 36513067
    312 8cue:5N (3.2) BS02 CPL ? N/A P17792 36513067
    313 8ffo:A (3.5) BS02 CPL ? GO:0005216 ... Q9XSM3 37735536
    314 8ffo:A (3.5) BS03 CPL ? GO:0005216 ... Q9XSM3 37735536
    315 8ffo:A (3.5) BS06 CPL ? GO:0005216 ... Q9XSM3 37735536
    316 8ffo:A (3.5) BS07 CPL ? GO:0005216 ... Q9XSM3 37735536
    317 8ffo:B (3.5) BS01 CPL ? GO:0005216 ... Q9XSM3 37735536
    318 8ffo:B (3.5) BS03 CPL ? GO:0005216 ... Q9XSM3 37735536
    319 8ffo:B (3.5) BS04 CPL ? GO:0005216 ... Q9XSM3 37735536
    320 8ffo:B (3.5) BS07 CPL ? GO:0005216 ... Q9XSM3 37735536
    321 8ffo:C (3.5) BS01 CPL ? GO:0005216 ... Q9XSM3 37735536
    322 8ffo:C (3.5) BS03 CPL ? GO:0005216 ... Q9XSM3 37735536
    323 8ffo:C (3.5) BS04 CPL ? GO:0005216 ... Q9XSM3 37735536
    324 8ffo:C (3.5) BS07 CPL ? GO:0005216 ... Q9XSM3 37735536
    325 8ffo:D (3.5) BS01 CPL ? GO:0005216 ... Q9XSM3 37735536
    326 8ffo:D (3.5) BS02 CPL ? GO:0005216 ... Q9XSM3 37735536
    327 8ffo:D (3.5) BS04 CPL ? GO:0005216 ... Q9XSM3 37735536
    328 8ffo:D (3.5) BS05 CPL ? GO:0005216 ... Q9XSM3 37735536
    329 8ffq:A (2.65) BS04 CPL ? GO:0005216 ... Q9XSM3 38225355
    330 8ffq:A (2.65) BS05 CPL ? GO:0005216 ... Q9XSM3 38225355
    331 8ffq:B (2.65) BS04 CPL ? GO:0005216 ... Q9XSM3 38225355
    332 8ffq:B (2.65) BS07 CPL ? GO:0005216 ... Q9XSM3 38225355
    333 8ffq:C (2.65) BS04 CPL ? GO:0005216 ... Q9XSM3 38225355
    334 8ffq:C (2.65) BS07 CPL ? GO:0005216 ... Q9XSM3 38225355
    335 8ffq:D (2.65) BS04 CPL ? GO:0005216 ... Q9XSM3 38225355
    336 8ffq:D (2.65) BS05 CPL ? GO:0005216 ... Q9XSM3 38225355
    337 8otq:A (3.22) BS01 CPL ? GO:0006812 ... A3RL54 37880360
    338 8otq:B (3.22) BS01 CPL ? GO:0006812 ... A3RL54 37880360
    339 8otw:A (3.68) BS01 CPL ? GO:0006812 ... A3RL54 37880360
    340 8otw:B (3.68) BS01 CPL ? GO:0006812 ... A3RL54 37880360
    341 8tf2:A (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    342 8tf2:A (2.57) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    343 8tf2:A (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    344 8tf2:A (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    345 8tf2:A (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    346 8tf2:B (2.57) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    347 8tf2:B (2.57) BS02 CPL ? GO:0005216 ... Q9XSM3 38141613
    348 8tf2:B (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    349 8tf2:B (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    350 8tf2:B (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    351 8tf2:C (2.57) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    352 8tf2:C (2.57) BS02 CPL ? GO:0005216 ... Q9XSM3 38141613
    353 8tf2:C (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    354 8tf2:C (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    355 8tf2:C (2.57) BS07 CPL ? GO:0005216 ... Q9XSM3 38141613
    356 8tf2:D (2.57) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    357 8tf2:D (2.57) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    358 8tf2:D (2.57) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    359 8tf2:D (2.57) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    360 8tf2:D (2.57) BS09 CPL ? GO:0005216 ... Q9XSM3 38141613
    361 8tf3:A (2.94) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    362 8tf3:A (2.94) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    363 8tf3:A (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    364 8tf3:B (2.94) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    365 8tf3:B (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    366 8tf3:B (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    367 8tf3:C (2.94) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    368 8tf3:C (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    369 8tf3:C (2.94) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    370 8tf3:D (2.94) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    371 8tf3:D (2.94) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    372 8tf3:D (2.94) BS08 CPL ? GO:0005216 ... Q9XSM3 38141613
    373 8tf4:A (2.86) BS03 CPL ? GO:0005216 ... Q9XSM3 38141613
    374 8tf4:A (2.86) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    375 8tf4:A (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    376 8tf4:B (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    377 8tf4:B (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    378 8tf4:B (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    379 8tf4:C (2.86) BS01 CPL ? GO:0005216 ... Q9XSM3 38141613
    380 8tf4:C (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    381 8tf4:C (2.86) BS06 CPL ? GO:0005216 ... Q9XSM3 38141613
    382 8tf4:D (2.86) BS04 CPL ? GO:0005216 ... Q9XSM3 38141613
    383 8tf4:D (2.86) BS05 CPL ? GO:0005216 ... Q9XSM3 38141613
    384 8tf4:D (2.86) BS08 CPL ? GO:0005216 ... Q9XSM3 38141613
    385 8u53:A (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    386 8u53:B (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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