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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 386 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ln3:A (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    2 1ln3:B (2.9) BS01 CPL ? GO:0005515 ... Q9UKL6 12055623
    3 2w6d:A (9.0) BS02 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    4 2w6d:A (9.0) BS03 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    5 2w6d:A (9.0) BS04 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    6 2w6d:A (9.0) BS05 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    7 2w6d:A (9.0) BS06 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    8 2w6d:A (9.0) BS07 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    9 2w6d:A (9.0) BS08 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    10 2w6d:A (9.0) BS09 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    11 2w6d:A (9.0) BS10 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    12 2w6d:A (9.0) BS11 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    13 2w6d:B (9.0) BS02 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    14 2w6d:B (9.0) BS03 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    15 2w6d:B (9.0) BS04 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    16 2w6d:B (9.0) BS05 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    17 2w6d:B (9.0) BS06 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    18 2w6d:B (9.0) BS07 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    19 2w6d:B (9.0) BS08 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    20 2w6d:B (9.0) BS09 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    21 2w6d:B (9.0) BS10 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    22 2w6d:B (9.0) BS11 CPL 3.6.5.5 GO:0003924 ... B2IZD3 20064379
    23 5eik:A (2.3) BS02 CPL ? GO:0005267 ... Q9NA73 27698420
    24 6ezn:A (3.3) BS01 CPL 2.4.99.18 GO:0006486 ... P41543 36435935
    25 6ezn:B (3.3) BS01 CPL 2.4.99.18 GO:0003674 ... P46964 36435935
    26 6ezn:D (3.3) BS01 CPL 2.4.99.18 GO:0005515 ... Q99380 36435935
    27 6ezn:E (3.3) BS01 CPL 2.4.99.18 GO:0005198 ... Q92316 36435935
    28 6ezn:E (3.3) BS02 CPL 2.4.99.18 GO:0005198 ... Q92316 36435935
    29 6ezn:F (3.3) BS01 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    30 6ezn:F (3.3) BS02 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    31 6ezn:H (3.3) BS01 CPL 2.4.99.18 GO:0006487 ... Q02795 36435935
    32 6p25:A (3.2) BS01 CPL 2.4.1.109 GO:0000030 ... P33775 31285605
    33 6p25:A (3.2) BS03 CPL 2.4.1.109 GO:0000030 ... P33775 31285605
    34 6p25:B (3.2) BS02 CPL 2.4.1.109 GO:0000030 ... P31382 31285605
    35 6p25:B (3.2) BS03 CPL 2.4.1.109 GO:0000030 ... P31382 31285605
    36 6p2r:A (3.2) BS01 CPL 2.4.1.109 GO:0000030 ... P33775 31285605
    37 6p2r:A (3.2) BS03 CPL 2.4.1.109 GO:0000030 ... P33775 31285605
    38 6p2r:B (3.2) BS01 CPL 2.4.1.109 GO:0000030 ... P31382 31285605
    39 6p2r:B (3.2) BS02 CPL 2.4.1.109 GO:0000030 ... P31382 31285605
    40 6pw4:A (3.53) BS02 CPL ? GO:0005216 ... Q0Z852 31519888
    41 6pw4:C (3.53) BS02 CPL ? GO:0005216 ... Q0Z852 31519888
    42 6rfq:2 (3.3) BS02 CPL 7.1.1.2 GO:0005739 ... Q9B6C8 31844670
    43 6rfr:2 (3.2) BS02 CPL 7.1.1.2 GO:0005739 ... Q9B6C8 31844670
    44 6wej:A (2.6) BS01 CPL ? GO:0003031 ... Q03611 32483338
    45 6wej:A (2.6) BS02 CPL ? GO:0003031 ... Q03611 32483338
    46 6wej:A (2.6) BS03 CPL ? GO:0003031 ... Q03611 32483338
    47 6wej:A (2.6) BS04 CPL ? GO:0003031 ... Q03611 32483338
    48 6wej:A (2.6) BS05 CPL ? GO:0003031 ... Q03611 32483338
    49 6wej:B (2.6) BS01 CPL ? GO:0003031 ... Q03611 32483338
    50 6wej:B (2.6) BS02 CPL ? GO:0003031 ... Q03611 32483338
    51 6wej:B (2.6) BS03 CPL ? GO:0003031 ... Q03611 32483338
    52 6wej:B (2.6) BS04 CPL ? GO:0003031 ... Q03611 32483338
    53 6wej:B (2.6) BS05 CPL ? GO:0003031 ... Q03611 32483338
    54 6wej:C (2.6) BS01 CPL ? GO:0003031 ... Q03611 32483338
    55 6wej:C (2.6) BS02 CPL ? GO:0003031 ... Q03611 32483338
    56 6wej:C (2.6) BS03 CPL ? GO:0003031 ... Q03611 32483338
    57 6wej:C (2.6) BS04 CPL ? GO:0003031 ... Q03611 32483338
    58 6wej:C (2.6) BS05 CPL ? GO:0003031 ... Q03611 32483338
    59 6wej:D (2.6) BS01 CPL ? GO:0003031 ... Q03611 32483338
    60 6wej:D (2.6) BS02 CPL ? GO:0003031 ... Q03611 32483338
    61 6wej:D (2.6) BS03 CPL ? GO:0003031 ... Q03611 32483338
    62 6wej:D (2.6) BS04 CPL ? GO:0003031 ... Q03611 32483338
    63 6wej:D (2.6) BS05 CPL ? GO:0003031 ... Q03611 32483338
    64 6wek:A (2.7) BS02 CPL ? GO:0003031 ... Q03611 32483338
    65 6wek:A (2.7) BS03 CPL ? GO:0003031 ... Q03611 32483338
    66 6wek:A (2.7) BS04 CPL ? GO:0003031 ... Q03611 32483338
    67 6wek:A (2.7) BS05 CPL ? GO:0003031 ... Q03611 32483338
    68 6wek:B (2.7) BS02 CPL ? GO:0003031 ... Q03611 32483338
    69 6wek:B (2.7) BS03 CPL ? GO:0003031 ... Q03611 32483338
    70 6wek:B (2.7) BS04 CPL ? GO:0003031 ... Q03611 32483338
    71 6wek:C (2.7) BS02 CPL ? GO:0003031 ... Q03611 32483338
    72 6wek:C (2.7) BS03 CPL ? GO:0003031 ... Q03611 32483338
    73 6wek:C (2.7) BS04 CPL ? GO:0003031 ... Q03611 32483338
    74 6wek:D (2.7) BS02 CPL ? GO:0003031 ... Q03611 32483338
    75 6wek:D (2.7) BS03 CPL ? GO:0003031 ... Q03611 32483338
    76 6wek:D (2.7) BS04 CPL ? GO:0003031 ... Q03611 32483338
    77 6wel:A (2.5) BS01 CPL ? GO:0003031 ... Q03611 32483338
    78 6wel:A (2.5) BS02 CPL ? GO:0003031 ... Q03611 32483338
    79 6wel:A (2.5) BS03 CPL ? GO:0003031 ... Q03611 32483338
    80 6wel:A (2.5) BS04 CPL ? GO:0003031 ... Q03611 32483338
    81 6wel:B (2.5) BS01 CPL ? GO:0003031 ... Q03611 32483338
    82 6wel:B (2.5) BS02 CPL ? GO:0003031 ... Q03611 32483338
    83 6wel:B (2.5) BS03 CPL ? GO:0003031 ... Q03611 32483338
    84 6wel:B (2.5) BS04 CPL ? GO:0003031 ... Q03611 32483338
    85 6wel:C (2.5) BS01 CPL ? GO:0003031 ... Q03611 32483338
    86 6wel:C (2.5) BS02 CPL ? GO:0003031 ... Q03611 32483338
    87 6wel:C (2.5) BS03 CPL ? GO:0003031 ... Q03611 32483338
    88 6wel:C (2.5) BS04 CPL ? GO:0003031 ... Q03611 32483338
    89 6wel:D (2.5) BS01 CPL ? GO:0003031 ... Q03611 32483338
    90 6wel:D (2.5) BS02 CPL ? GO:0003031 ... Q03611 32483338
    91 6wel:D (2.5) BS03 CPL ? GO:0003031 ... Q03611 32483338
    92 6wel:D (2.5) BS04 CPL ? GO:0003031 ... Q03611 32483338
    93 7lft:A (2.6) BS03 CPL ? GO:0005216 ... P29973 33651975
    94 7lft:A (2.6) BS04 CPL ? GO:0005216 ... P29973 33651975
    95 7lft:A (2.6) BS05 CPL ? GO:0005216 ... P29973 33651975
    96 7lft:B (2.6) BS03 CPL ? GO:0005216 ... P29973 33651975
    97 7lft:B (2.6) BS04 CPL ? GO:0005216 ... P29973 33651975
    98 7lft:B (2.6) BS05 CPL ? GO:0005216 ... P29973 33651975
    99 7lft:C (2.6) BS03 CPL ? GO:0005216 ... P29973 33651975
    100 7lft:C (2.6) BS04 CPL ? GO:0005216 ... P29973 33651975
    101 7lft:C (2.6) BS05 CPL ? GO:0005216 ... P29973 33651975
    102 7lft:D (2.6) BS03 CPL ? GO:0005216 ... P29973 33651975
    103 7lft:D (2.6) BS04 CPL ? GO:0005216 ... P29973 33651975
    104 7lft:D (2.6) BS05 CPL ? GO:0005216 ... P29973 33651975
    105 7n15:A (2.9) BS02 CPL ? GO:0003031 ... Q03611 35233102
    106 7n15:A (2.9) BS03 CPL ? GO:0003031 ... Q03611 35233102
    107 7n15:A (2.9) BS04 CPL ? GO:0003031 ... Q03611 35233102
    108 7n15:A (2.9) BS05 CPL ? GO:0003031 ... Q03611 35233102
    109 7n15:B (2.9) BS02 CPL ? GO:0003031 ... Q03611 35233102
    110 7n15:B (2.9) BS03 CPL ? GO:0003031 ... Q03611 35233102
    111 7n15:B (2.9) BS04 CPL ? GO:0003031 ... Q03611 35233102
    112 7n15:B (2.9) BS05 CPL ? GO:0003031 ... Q03611 35233102
    113 7n15:C (2.9) BS02 CPL ? GO:0003031 ... Q03611 35233102
    114 7n15:C (2.9) BS03 CPL ? GO:0003031 ... Q03611 35233102
    115 7n15:C (2.9) BS04 CPL ? GO:0003031 ... Q03611 35233102
    116 7n15:C (2.9) BS05 CPL ? GO:0003031 ... Q03611 35233102
    117 7n15:D (2.9) BS02 CPL ? GO:0003031 ... Q03611 35233102
    118 7n15:D (2.9) BS03 CPL ? GO:0003031 ... Q03611 35233102
    119 7n15:D (2.9) BS04 CPL ? GO:0003031 ... Q03611 35233102
    120 7n15:D (2.9) BS05 CPL ? GO:0003031 ... Q03611 35233102
    121 7n16:A (3.2) BS01 CPL ? GO:0003031 ... Q03611 35233102
    122 7n16:A (3.2) BS02 CPL ? GO:0003031 ... Q03611 35233102
    123 7n16:A (3.2) BS03 CPL ? GO:0003031 ... Q03611 35233102
    124 7n16:B (3.2) BS01 CPL ? GO:0003031 ... Q03611 35233102
    125 7n16:B (3.2) BS02 CPL ? GO:0003031 ... Q03611 35233102
    126 7n16:B (3.2) BS03 CPL ? GO:0003031 ... Q03611 35233102
    127 7n16:C (3.2) BS01 CPL ? GO:0003031 ... Q03611 35233102
    128 7n16:C (3.2) BS02 CPL ? GO:0003031 ... Q03611 35233102
    129 7n16:C (3.2) BS03 CPL ? GO:0003031 ... Q03611 35233102
    130 7n16:D (3.2) BS01 CPL ? GO:0003031 ... Q03611 35233102
    131 7n16:D (3.2) BS02 CPL ? GO:0003031 ... Q03611 35233102
    132 7n16:D (3.2) BS03 CPL ? GO:0003031 ... Q03611 35233102
    133 7n17:A (3.1) BS01 CPL ? GO:0003031 ... Q03611 35233102
    134 7n17:A (3.1) BS02 CPL ? GO:0003031 ... Q03611 35233102
    135 7n17:A (3.1) BS03 CPL ? GO:0003031 ... Q03611 35233102
    136 7n17:A (3.1) BS04 CPL ? GO:0003031 ... Q03611 35233102
    137 7n17:A (3.1) BS05 CPL ? GO:0003031 ... Q03611 35233102
    138 7n17:B (3.1) BS01 CPL ? GO:0003031 ... Q03611 35233102
    139 7n17:B (3.1) BS02 CPL ? GO:0003031 ... Q03611 35233102
    140 7n17:B (3.1) BS03 CPL ? GO:0003031 ... Q03611 35233102
    141 7n17:B (3.1) BS04 CPL ? GO:0003031 ... Q03611 35233102
    142 7n17:B (3.1) BS05 CPL ? GO:0003031 ... Q03611 35233102
    143 7n17:C (3.1) BS01 CPL ? GO:0003031 ... Q03611 35233102
    144 7n17:C (3.1) BS02 CPL ? GO:0003031 ... Q03611 35233102
    145 7n17:C (3.1) BS03 CPL ? GO:0003031 ... Q03611 35233102
    146 7n17:C (3.1) BS04 CPL ? GO:0003031 ... Q03611 35233102
    147 7n17:C (3.1) BS05 CPL ? GO:0003031 ... Q03611 35233102
    148 7n17:D (3.1) BS01 CPL ? GO:0003031 ... Q03611 35233102
    149 7n17:D (3.1) BS02 CPL ? GO:0003031 ... Q03611 35233102
    150 7n17:D (3.1) BS03 CPL ? GO:0003031 ... Q03611 35233102
    151 7n17:D (3.1) BS04 CPL ? GO:0003031 ... Q03611 35233102
    152 7n17:D (3.1) BS05 CPL ? GO:0003031 ... Q03611 35233102
    153 7o6y:2 (3.4) BS01 CPL 7.1.1.2 GO:0005739 ... Q9B6C8 34767441
    154 7o6y:b (3.4) BS01 CPL ? N/A A0A1D8NGI5 34767441
    155 7o71:2 (2.4) BS02 CPL 7.1.1.2 GO:0005739 ... Q9B6C8 34767441
    156 7z51:A (3.3) BS01 CPL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P14336 35458522
    157 7z51:B (3.3) BS01 CPL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P14336 35458522
    158 7z51:B (3.3) BS02 CPL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P14336 35458522
    159 7z51:C (3.3) BS01 CPL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P14336 35458522
    160 7z51:C (3.3) BS02 CPL 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0046983 ... P14336 35458522
    161 7zkp:2 (3.2) BS01 CPL 7.1.1.2 GO:0005739 ... Q9B6C8 36383672
    162 8agb:A (3.0) BS01 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    163 8agb:B (3.0) BS01 CPL ? GO:0005515 ... Q99380 36435935
    164 8agb:C (3.0) BS01 CPL ? GO:0005198 ... Q92316 36435935
    165 8agb:E (3.0) BS01 CPL ? GO:0006486 ... P41543 36435935
    166 8agb:F (3.0) BS02 CPL ? GO:0006487 ... Q02795 36435935
    167 8agc:A (3.1) BS03 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    168 8agc:C (3.1) BS01 CPL ? GO:0005198 ... Q92316 36435935
    169 8agc:E (3.1) BS01 CPL ? GO:0006486 ... P41543 36435935
    170 8agc:F (3.1) BS01 CPL ? GO:0006487 ... Q02795 36435935
    171 8age:A (2.8) BS02 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    172 8age:A (2.8) BS06 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    173 8age:A (2.8) BS07 CPL 2.4.99.18 GO:0004576 ... P39007 36435935
    174 8age:B (2.8) BS01 CPL ? GO:0005515 ... Q99380 36435935
    175 8age:C (2.8) BS01 CPL ? GO:0005198 ... Q92316 36435935
    176 8age:E (2.8) BS01 CPL ? GO:0006486 ... P41543 36435935
    177 8age:F (2.8) BS01 CPL ? GO:0006487 ... Q02795 36435935
    178 8cue:1A (3.2) BS01 CPL ? N/A P17792 36513067
    179 8cue:1B (3.2) BS01 CPL ? N/A P17792 36513067
    180 8cue:1B (3.2) BS02 CPL ? N/A P17792 36513067
    181 8cue:1C (3.2) BS01 CPL ? N/A P17792 36513067
    182 8cue:1C (3.2) BS02 CPL ? N/A P17792 36513067
    183 8cue:1D (3.2) BS01 CPL ? N/A P17792 36513067
    184 8cue:1D (3.2) BS02 CPL ? N/A P17792 36513067
    185 8cue:1E (3.2) BS01 CPL ? N/A P17792 36513067
    186 8cue:1E (3.2) BS02 CPL ? N/A P17792 36513067
    187 8cue:1F (3.2) BS01 CPL ? N/A P17792 36513067
    188 8cue:1F (3.2) BS02 CPL ? N/A P17792 36513067
    189 8cue:1G (3.2) BS01 CPL ? N/A P17792 36513067
    190 8cue:1G (3.2) BS02 CPL ? N/A P17792 36513067
    191 8cue:1H (3.2) BS01 CPL ? N/A P17792 36513067
    192 8cue:1H (3.2) BS02 CPL ? N/A P17792 36513067
    193 8cue:1I (3.2) BS01 CPL ? N/A P17792 36513067
    194 8cue:1I (3.2) BS02 CPL ? N/A P17792 36513067
    195 8cue:1J (3.2) BS01 CPL ? N/A P17792 36513067
    196 8cue:1J (3.2) BS02 CPL ? N/A P17792 36513067
    197 8cue:1K (3.2) BS01 CPL ? N/A P17792 36513067
    198 8cue:1K (3.2) BS02 CPL ? N/A P17792 36513067
    199 8cue:1L (3.2) BS01 CPL ? N/A P17792 36513067
    200 8cue:1L (3.2) BS02 CPL ? N/A P17792 36513067
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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