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BioLiP
Download all results in tab-seperated text for 69 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1coh:B (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    2 1coh:D (2.9) BS01 COH ? GO:0004601 ... P68871 2738915
    3 1diy:A (3.0) BS01 COH 1.14.99.1 GO:0001516 ... P05979 10988074
    4 1fe2:A (3.0) BS01 COH 1.14.99.1 GO:0001516 ... P05979 11121413
    5 1igx:A (3.1) BS02 COH 1.14.99.1 GO:0001516 ... P05979 11477109
    6 1igz:A (2.9) BS02 COH 1.14.99.1 GO:0001516 ... P05979 11477109
    7 1lfm:A (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    8 1lfm:B (1.5) BS01 COH ? GO:0005739 ... P81459 12084923
    9 1u67:A (3.1) BS01 COH 1.14.99.1 GO:0004601 ... P05979 15292194
    10 1yog:A (1.65) BS01 COH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8810310
    11 1yoh:A (1.65) BS01 COH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8810310
    12 1yoi:A (1.65) BS01 COH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P02185 8810310
    13 2o5s:X (1.6) BS02 COH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 17905436
    14 2o5t:X (1.6) BS01 COH 1.11.1.-
    1.7.-.-    		 GO:0004601 ... P68082 17905436
    15 2zdp:A (1.5) BS02 COH 1.14.99.48 GO:0004392 ... Q7A827 18713745
    16 2zdp:B (1.5) BS02 COH 1.14.99.48 GO:0004392 ... Q7A827 18713745
    17 3hs5:A (2.1) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    18 3hs5:B (2.1) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    19 3hs6:A (2.4) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    20 3hs6:B (2.4) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    21 3hs7:A (2.65) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    22 3hs7:B (2.65) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    23 3krk:A (2.4) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    24 3krk:B (2.4) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 20463020
    25 3mdl:A (2.2) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    26 3mdl:B (2.2) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    27 3olt:A (2.45) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    28 3olt:B (2.45) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    29 3olu:A (2.35) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    30 3olu:B (2.35) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 21489986
    31 3qh0:A (2.1) BS03 COH 1.14.99.1 GO:0001516 ... Q05769 21467029
    32 3qh0:B (2.1) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 21467029
    33 3qzp:A (1.9) BS01 COH ? N/A Q7A655 21893067
    34 3qzp:B (1.9) BS01 COH ? N/A Q7A655 21893067
    35 3tzi:A (2.15) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 22637474
    36 3tzi:B (2.15) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 22637474
    37 4e1g:A (2.1) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 22637474
    38 4e1g:B (2.1) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 22637474
    39 4n73:A (1.8662) BS01 COH ? GO:0003677 ... Q14995 24872411
    40 4rut:A (2.16) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 25648895
    41 4rut:B (2.16) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 25648895
    42 4rut:C (2.16) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 25648895
    43 4rut:D (2.16) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 25648895
    44 5f19:A (2.04) BS01 COH 1.14.99.1 GO:0001516 ... P35354 26859324
    45 5f19:B (2.04) BS01 COH 1.14.99.1 GO:0001516 ... P35354 26859324
    46 5f1a:A (2.38) BS01 COH 1.14.99.1 GO:0001516 ... P35354 26859324
    47 5f1a:B (2.38) BS01 COH 1.14.99.1 GO:0001516 ... P35354 26859324
    48 5fdq:A (1.9) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 26859324
    49 5fdq:B (1.9) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 26859324
    50 5ikq:A (2.41) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    51 5ikq:B (2.41) BS01 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    52 5ikr:A (2.342) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    53 5ikr:B (2.342) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    54 5ikt:A (2.451) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    55 5ikt:B (2.451) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    56 5ikv:A (2.508) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    57 5ikv:B (2.508) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27226593
    58 5jvy:A (2.36) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    59 5jvy:B (2.36) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    60 5jvz:A (2.62) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    61 5jvz:B (2.62) BS02 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    62 5jw1:A (2.822) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    63 5jw1:B (2.822) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 27756840
    64 5kir:A (2.697) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27710942
    65 5kir:B (2.697) BS02 COH 1.14.99.1 GO:0001516 ... P35354 27710942
    66 6jvc:A (1.75) BS02 COH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    67 6jvc:C (1.75) BS02 COH 1.14.14.1
    1.6.2.4    		 GO:0004497 ... P14779 32157795
    68 6ofy:A (2.2) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 31469551
    69 6ofy:B (2.2) BS01 COH 1.14.99.1 GO:0001516 ... Q05769 31469551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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