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BioLiP
Download all results in tab-seperated text for 15 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1i7z:A (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    2 1i7z:B (2.3) BS01 COC ? N/A P01857 11469854 PDBbind: -logKd/Ki=6.40, Kd=0.4uM
    3 1i7z:C (2.3) BS01 COC ? GO:0002250 ... P01834 11469854 MOAD: Kd=0.4uM
    4 1i7z:D (2.3) BS01 COC ? N/A P01857 11469854
    5 1q72:H (1.7) BS01 COC N/A N/A N/A 15885702 MOAD: Kd=0.0000123M
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    6 1q72:L (1.7) BS01 COC N/A N/A N/A 15885702 PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    7 2ajv:H (1.5) BS01 COC ? N/A A2NUE8 16472740
    8 2ajv:L (1.5) BS01 COC ? GO:0005576 ... P01837 16472740
    9 2pgz:A (1.76) BS01 COC ? GO:0004888 ... Q8WSF8 17481657 MOAD: Kd=1.8uM
    PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    10 2pgz:B (1.76) BS01 COC ? GO:0004888 ... Q8WSF8 17481657 PDBbind: -logKd/Ki=5.74, Kd=1.8uM
    11 2pgz:E (1.76) BS01 COC ? GO:0004888 ... Q8WSF8 17481657
    12 4xp4:A (2.8) BS02 COC ? GO:0016020 ... Q7K4Y6 25970245
    13 4xpb:A (3.05) BS03 COC ? GO:0016020 ... Q7K4Y6 25970245
    14 8de3:A (3.3) BS01 COC ? GO:0016020 ... F1RN70 N/A
    15 9eo4:B (2.66) BS06 COC N/A GO:0001504 ... Q01959 39112703
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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