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BioLiP
Download all results in tab-seperated text for 27 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1bmt:A (3.0) BS01 COB 2.1.1.13 GO:0031419 ... P13009 7992050
    2 1bmt:B (3.0) BS01 COB 2.1.1.13 GO:0031419 ... P13009 7992050
    3 1cb7:A (2.0) BS01 COB 5.4.99.1 GO:0005515 ... P80078 10467146
    4 1cb7:B (2.0) BS01 COB 5.4.99.1 GO:0003824 ... P80077 10467146
    5 1cb7:C (2.0) BS01 COB 5.4.99.1 GO:0005515 ... P80078 10467146
    6 1cb7:D (2.0) BS01 COB 5.4.99.1 GO:0003824 ... P80077 10467146
    7 3sc0:A (1.95) BS01 COB 1.16.1.6
    2.5.1.151    		 N/A Q9Y4U1 21697092
    8 4djf:A (3.03) BS03 COB 2.1.1.258 GO:0005509 ... Q46389 22419154
    9 4djf:B (3.03) BS03 COB 2.1.1.258 GO:0005509 ... Q46389 22419154
    10 4djf:C (3.03) BS02 COB ? GO:0005506 ... Q07340 22419154
    11 4djf:E (3.03) BS02 COB ? GO:0005506 ... Q07340 22419154
    12 4jgi:A (1.5) BS01 COB ? GO:0005829 ... Q8RPG0 23897483
    13 4jgi:B (1.5) BS01 COB ? GO:0005829 ... Q8RPG0 23897483
    14 5ujc:A (1.35) BS01 COB 1.16.1.- GO:0005737 ... Q7Z144 28442570
    15 7qbs:A (2.327) BS05 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    16 7qbt:A (1.9) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    17 7qbt:B (1.9) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    18 7qbt:C (1.9) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    19 7qbt:D (1.9) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    20 7qbu:A (2.298) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    21 7qbu:B (2.298) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    22 7qbv:A (2.701) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    23 7qbv:B (2.701) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    24 7qbv:C (2.701) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    25 7qbv:D (2.701) BS04 COB 2.1.1.379 GO:0003824 ... Q8THG6 35110733
    26 8q4h:A (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    27 8q4h:B (2.83) BS02 COB 1.21.99.5 GO:0005886 ... Q8GJ31 37923808
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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