Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 850 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 8ez4:C (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    802 8ez4:D (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    803 8ez4:E (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    804 8ez4:F (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    805 8ez4:G (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    806 8ez4:H (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    807 8ez4:I (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    808 8ez4:J (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    809 8ez4:K (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    810 8ez4:L (1.89) BS02 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 36634455
    811 8j4j:A (2.15) BS01 CO3 N/A N/A N/A 38143427
    812 8j79:A (1.99) BS04 CO3 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    813 8j79:B (1.99) BS04 CO3 1.17.1.4
    1.17.3.2    		 GO:0002197 ... P80457 N/A
    814 8k6s:A (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    815 8k6s:B (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    816 8k6s:F (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    817 8k6s:G (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    818 8k6s:I (1.6) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    819 8k6x:A (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    820 8k6x:B (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    821 8k6x:F (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    822 8k6x:H (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    823 8k6x:I (1.8) BS01 CO3 4.2.1.104 GO:0003677 ... P00816 37971797
    824 8otk:A (1.15) BS01 CO3 N/A N/A P37571 N/A
    825 8svm:A (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    826 8svm:B (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    827 8svm:C (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    828 8svm:D (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    829 8svm:E (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    830 8svm:F (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    831 8svm:G (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    832 8svm:H (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    833 8svm:I (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    834 8svm:J (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    835 8svm:K (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    836 8svm:L (2.3) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    837 8sw9:A (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    838 8sw9:B (2.6) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    839 8sw9:C (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    840 8sw9:D (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    841 8sw9:E (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    842 8sw9:F (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    843 8sw9:G (2.6) BS01 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    844 8sw9:H (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    845 8sw9:I (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    846 8sw9:J (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    847 8sw9:K (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    848 8sw9:L (2.6) BS03 CO3 3.4.11.1
    3.4.13.-    		 GO:0005737 ... Q8IL11 N/A
    849 8t44:B (3.12) BS03 CO3 ? GO:0005452 ... P02730 N/A
    850 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218