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BioLiP
Download all results in tab-seperated text for 459 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7tj5:C (2.41) BS02 CMP ? GO:0005221 ... G0GA88 36352139
    402 7tj5:D (2.41) BS01 CMP ? GO:0005221 ... G0GA88 36352139
    403 7tj6:A (2.9) BS01 CMP ? GO:0005221 ... G0GA88 36352139
    404 7tj6:B (2.9) BS01 CMP ? GO:0005221 ... G0GA88 36352139
    405 7tj6:C (2.9) BS02 CMP ? GO:0005221 ... G0GA88 36352139
    406 7tj6:D (2.9) BS01 CMP ? GO:0005221 ... G0GA88 36352139
    407 7tkt:A (3.6) BS01 CMP ? GO:0005221 ... G0GA88 36352139
    408 7tkt:B (3.6) BS02 CMP ? GO:0005221 ... G0GA88 36352139
    409 7tkt:C (3.6) BS02 CMP ? GO:0005221 ... G0GA88 36352139
    410 7tkt:D (3.6) BS03 CMP ? GO:0005221 ... G0GA88 36352139
    411 8pd8:A (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    412 8pd8:B (3.3) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    413 8pd9:A (3.6) BS01 CMP ? GO:0006812 ... A3RL54 37880361
    414 8qvz:A (1.774) BS01 CMP N/A N/A Q13232 N/A
    415 8qvz:B (1.774) BS01 CMP N/A N/A Q13232 N/A
    416 8qvz:C (1.774) BS01 CMP N/A N/A Q13232 N/A
    417 8qvz:D (1.774) BS01 CMP N/A N/A Q13232 N/A
    418 8qvz:E (1.774) BS01 CMP N/A N/A Q13232 N/A
    419 8qvz:F (1.774) BS01 CMP N/A N/A Q13232 N/A
    420 8set:A (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    421 8set:B (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    422 8set:C (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    423 8set:D (3.42) BS01 CMP ? GO:0003151 ... P11716 37192614
    424 8sf0:A (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    425 8sf0:B (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    426 8sf0:C (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    427 8sf0:D (2.9) BS01 CMP ? GO:0003151 ... P11716 37192614
    428 8t4m:A (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    429 8t4m:B (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    430 8t4m:C (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    431 8t4m:D (3.16) BS01 CMP ? GO:0003254 ... O60741 38890331
    432 8t4y:A (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    433 8t4y:B (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    434 8t4y:C (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    435 8t4y:D (3.58) BS01 CMP N/A GO:0003254 ... O60741 38890331
    436 8t50:A (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    437 8t50:B (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    438 8t50:C (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    439 8t50:D (3.6) BS01 CMP N/A GO:0003254 ... O60741 38890331
    440 8t5y:A (1.44) BS01 CMP N/A GO:0003677 ... N/A 37945601
    441 8vt9:A (2.9) BS01 CMP N/A N/A G0GA88 N/A
    442 8vt9:B (2.9) BS01 CMP N/A N/A G0GA88 N/A
    443 8vt9:C (2.9) BS01 CMP N/A N/A G0GA88 N/A
    444 8vt9:D (2.9) BS02 CMP N/A N/A G0GA88 N/A
    445 8vta:A (3.0) BS01 CMP N/A N/A G0GA88 N/A
    446 8vta:B (3.0) BS01 CMP N/A N/A G0GA88 N/A
    447 8vta:C (3.0) BS01 CMP N/A N/A G0GA88 N/A
    448 8vta:D (3.0) BS01 CMP N/A N/A G0GA88 N/A
    449 8vtb:A (2.5) BS01 CMP N/A N/A G0GA88 N/A
    450 8vtb:B (2.5) BS01 CMP N/A N/A G0GA88 N/A
    451 8vtb:C (2.5) BS01 CMP N/A N/A G0GA88 N/A
    452 8vtb:D (2.5) BS01 CMP N/A N/A G0GA88 N/A
    453 8xq7:A (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    454 8xq7:B (3.15) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    455 8xq8:A (3.35) BS01 CMP N/A GO:0005886 ... A3RL54 38957574
    456 9bc7:A (3.3) BS01 CMP N/A N/A O60741 39085604
    457 9bc7:B (3.3) BS01 CMP N/A N/A O60741 39085604
    458 9bc7:C (3.3) BS01 CMP N/A N/A O60741 39085604
    459 9bc7:D (3.3) BS01 CMP N/A N/A O60741 39085604
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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