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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 8j7m:A (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1602 8j7m:A (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1603 8j7m:B (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1604 8j7m:B (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1605 8j7m:C (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1606 8j7m:C (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1607 8j7m:C (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1608 8j7m:C (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1609 8j7m:D (3.1) BS01 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1610 8j7m:D (3.1) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1611 8j7m:D (3.1) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1612 8j7m:D (3.1) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1613 8jbk:A (2.8) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1614 8jbk:A (2.8) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1615 8jbk:B (2.8) BS01 CLR ? GO:0001671 ... P05027 37357620
    1616 8jbk:C (2.8) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1617 8jbk:C (2.8) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1618 8jbk:D (2.8) BS01 CLR ? GO:0001671 ... P05027 37357620
    1619 8jbk:E (2.8) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1620 8jbk:G (2.8) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1621 8jbl:A (3.0) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1622 8jbl:A (3.0) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1623 8jbl:A (3.0) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1624 8jbl:B (3.0) BS01 CLR ? GO:0001671 ... P05027 37357620
    1625 8jbl:C (3.0) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1626 8jbl:C (3.0) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1627 8jbl:C (3.0) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1628 8jbl:D (3.0) BS01 CLR ? GO:0001671 ... P05027 37357620
    1629 8jbl:E (3.0) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1630 8jbl:G (3.0) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1631 8jbm:A (2.9) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1632 8jbm:A (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1633 8jbm:C (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1634 8jbm:C (2.9) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1635 8jbm:C (2.9) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 37357620
    1636 8jbm:D (2.9) BS01 CLR ? GO:0001671 ... P05027 37357620
    1637 8jbm:E (2.9) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1638 8jbm:G (2.9) BS01 CLR ? GO:0001671 ... Q58K79 37357620
    1639 8jc0:g (3.4) BS01 CLR ? GO:0004888 ... P09693 38657677
    1640 8jc0:m (3.4) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    1641 8jcw:2 (3.0) BS02 CLR 5.2.1.8 GO:0000413 ... P62942
    Q14416    		 37286794
    1642 8jd0:2 (3.3) BS02 CLR 5.2.1.8 GO:0000413 ... P62942
    Q14416    		 37286794
    1643 8jd0:3 (3.3) BS02 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1644 8jd0:3 (3.3) BS03 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1645 8jd0:3 (3.3) BS04 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1646 8jd0:3 (3.3) BS05 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1647 8jd1:2 (3.7) BS02 CLR 5.2.1.8 GO:0000413 ... P62942
    Q14416    		 37286794
    1648 8jd1:3 (3.7) BS02 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1649 8jd1:3 (3.7) BS03 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1650 8jd1:3 (3.7) BS04 CLR 2.7.11.1 GO:0001641 ... A0A8V8TRG9
    Q14832    		 37286794
    1651 8jd3:2 (3.3) BS03 CLR ? GO:0001641 ... Q14416 37286794
    1652 8jd5:2 (3.6) BS03 CLR ? GO:0001641 ... Q14416 37286794
    1653 8jd5:4 (3.6) BS01 CLR ? GO:0001640 ... Q14833 37286794
    1654 8jd5:4 (3.6) BS04 CLR ? GO:0001640 ... Q14833 37286794
    1655 8jew:A (2.49) BS04 CLR ? GO:0005515 ... Q9UHI7 N/A
    1656 8jew:A (2.49) BS05 CLR ? GO:0005515 ... Q9UHI7 N/A
    1657 8jez:A (2.6) BS03 CLR N/A GO:0005515 ... Q9UHI7 N/A
    1658 8jez:A (2.6) BS04 CLR N/A GO:0005515 ... Q9UHI7 N/A
    1659 8jf1:A (2.85) BS06 CLR ? GO:0005515 ... Q9UHI7 N/A
    1660 8jfz:A (3.5) BS01 CLR ? GO:0000166 ... Q4H132 37357620
    1661 8jfz:C (3.5) BS02 CLR ? GO:0000166 ... Q4H132 37357620
    1662 8jfz:E (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    1663 8jfz:G (3.5) BS01 CLR ? GO:0016020 ... Q70Q12 37357620
    1664 8jhy:A (2.87) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    1665 8jii:A (3.17) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    1666 8jil:A (3.5) BS02 CLR ? GO:0001781 ... Q8TDS4 37597514
    1667 8jjp:A (2.9) BS02 CLR N/A N/A P46091 N/A
    1668 8jkv:A (2.87) BS01 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1669 8jkv:B (2.87) BS01 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1670 8jl3:A (2.59) BS02 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1671 8jl3:B (2.59) BS02 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1672 8jl4:A (2.68) BS03 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1673 8jl4:B (2.68) BS03 CLR 2.3.1.78 GO:0005764 ... Q68CP4 N/A
    1674 8jmn:B (2.26) BS01 CLR ? GO:0001671 ... P18434 37726448
    1675 8jqr:A (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    1676 8jqr:B (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    1677 8jqr:C (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    1678 8jqr:D (2.75) BS02 CLR N/A N/A Q8NER1 39107321
    1679 8jt6:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    1680 8jt6:R (3.0) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7    		 38552625
    1681 8jt8:A (2.7) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    1682 8jt8:A (2.7) BS04 CLR ? GO:0004930 ... P0ABE7
    P28223    		 38552625
    1683 8jwy:A (2.33) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P29274    		 38319473
    1684 8jwz:A (2.37) BS02 CLR 3.2.1.17 GO:0003796 ... D9IEF7
    P29274    		 38319473
    1685 8jxq:A (3.32) BS01 CLR 7.6.2.-
    7.6.2.2
    7.6.2.3    		 GO:0005515 ... Q92887 38316776
    1686 8jzs:A (2.95) BS01 CLR ? GO:0005290 ... Q8N697 37863913
    1687 8jzs:A (2.95) BS02 CLR ? GO:0005290 ... Q8N697 37863913
    1688 8jzs:A (2.95) BS03 CLR ? GO:0005290 ... Q8N697 37863913
    1689 8jzs:B (2.95) BS01 CLR ? GO:0005290 ... Q8N697 37863913
    1690 8jzs:B (2.95) BS02 CLR ? GO:0005290 ... Q8N697 37863913
    1691 8jzs:B (2.95) BS03 CLR ? GO:0005290 ... Q8N697 37863913
    1692 8jzx:A (2.5) BS01 CLR ? GO:0005290 ... Q8N697 37863876
    1693 8jzx:A (2.5) BS03 CLR ? GO:0005290 ... Q8N697 37863876
    1694 8jzx:A (2.5) BS04 CLR ? GO:0005290 ... Q8N697 37863876
    1695 8jzx:A (2.5) BS05 CLR ? GO:0005290 ... Q8N697 37863876
    1696 8jzx:B (2.5) BS01 CLR ? GO:0005290 ... Q8N697 37863876
    1697 8jzx:B (2.5) BS02 CLR ? GO:0005290 ... Q8N697 37863876
    1698 8jzx:B (2.5) BS03 CLR ? GO:0005290 ... Q8N697 37863876
    1699 8k2w:R (3.0) BS01 CLR ? GO:0002685 ... P0ABE7
    P41145
    P49682    		 38012179
    1700 8k2x:R (3.2) BS02 CLR 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45    		 38012179
    1701 8k66:A (2.53) BS04 CLR ? GO:0005886 ... Q0D9S3 38570642
    1702 8k66:B (2.53) BS04 CLR ? GO:0005886 ... Q0D9S3 38570642
    1703 8k69:A (2.33) BS04 CLR ? GO:0005886 ... Q93XI5 38570642
    1704 8k69:B (2.33) BS04 CLR ? GO:0005886 ... Q93XI5 38570642
    1705 8k8e:C (2.6) BS01 CLR ? GO:0000139 ... Q96BI3 38349793
    1706 8k9r:A (2.68) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    1707 8k9t:A (2.66) BS06 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    1708 8k9t:A (2.66) BS07 CLR 3.1.-.- GO:0005783 ... G0S652 38167496
    1709 8kco:C (2.8) BS01 CLR N/A N/A Q96BI3 N/A
    1710 8kco:C (2.8) BS02 CLR N/A N/A Q96BI3 N/A
    1711 8kcp:C (3.0) BS01 CLR N/A N/A Q96BI3 N/A
    1712 8kcp:C (3.0) BS02 CLR N/A N/A Q96BI3 N/A
    1713 8kcp:C (3.0) BS03 CLR N/A N/A Q96BI3 N/A
    1714 8kcs:C (2.4) BS01 CLR N/A N/A Q96BI3 N/A
    1715 8kcs:C (2.4) BS02 CLR N/A N/A Q96BI3 N/A
    1716 8kcs:C (2.4) BS03 CLR N/A N/A Q96BI3 N/A
    1717 8kct:C (2.6) BS01 CLR N/A N/A Q96BI3 N/A
    1718 8kct:C (2.6) BS02 CLR N/A N/A Q96BI3 N/A
    1719 8kct:C (2.6) BS03 CLR N/A N/A Q96BI3 N/A
    1720 8kcu:C (2.7) BS01 CLR N/A N/A Q96BI3 N/A
    1721 8kcu:C (2.7) BS02 CLR N/A N/A Q96BI3 N/A
    1722 8kcu:C (2.7) BS03 CLR N/A N/A Q96BI3 N/A
    1723 8kcw:A (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    1724 8kcw:A (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    1725 8kcw:C (2.77) BS02 CLR ? N/A Q9NXL6 38811802
    1726 8kcw:C (2.77) BS03 CLR ? N/A Q9NXL6 38811802
    1727 8kh4:A (3.1) BS01 CLR ? GO:0004930 ... Q8N6U8 37737235
    1728 8kh5:A (2.83) BS01 CLR ? GO:0004930 ... Q9BXC1 37737235
    1729 8kh5:A (2.83) BS03 CLR ? GO:0004930 ... Q9BXC1 37737235
    1730 8ozp:A (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    1731 8ozp:H (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    1732 8ozp:L (11.9) BS02 CLR N/A N/A A0A1Q1N9U9 39013471
    1733 8pg0:A (2.97) BS02 CLR ? GO:0004867 ... Q9NPD5 37723174
    1734 8pg0:A (2.97) BS03 CLR ? GO:0004867 ... Q9NPD5 37723174
    1735 8pjk:R (2.4) BS01 CLR ? GO:0001586 ... P08908 N/A
    1736 8pjk:R (2.4) BS02 CLR ? GO:0001586 ... P08908 N/A
    1737 8pkm:R (2.9) BS01 CLR ? GO:0001586 ... P08908 N/A
    1738 8pm6:A (3.22) BS01 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1739 8pm6:A (3.22) BS02 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1740 8pm6:A (3.22) BS03 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1741 8pm6:A (3.22) BS04 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1742 8pm6:A (3.22) BS05 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1743 8pm6:A (3.22) BS06 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1744 8pm6:A (3.22) BS07 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1745 8pmj:A (2.81) BS02 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1746 8pmj:A (2.81) BS03 CLR 7.6.2.- GO:0000139 ... O95342 37949847
    1747 8pwn:A (2.4) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    1748 8pwn:A (2.4) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    1749 8pwn:A (2.4) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 37828292
    1750 8qjf:A (2.86) BS01 CLR N/A N/A P08034 N/A
    1751 8qjf:A (2.86) BS02 CLR N/A N/A P08034 N/A
    1752 8qjf:C (2.86) BS01 CLR N/A N/A P08034 N/A
    1753 8qjf:C (2.86) BS02 CLR N/A N/A P08034 N/A
    1754 8qjf:D (2.86) BS01 CLR N/A N/A P08034 N/A
    1755 8qjf:E (2.86) BS01 CLR N/A N/A P08034 N/A
    1756 8qjf:F (2.86) BS01 CLR N/A N/A P08034 N/A
    1757 8qjf:G (2.86) BS01 CLR N/A N/A P08034 N/A
    1758 8qjf:H (2.86) BS01 CLR N/A N/A P08034 N/A
    1759 8qjf:I (2.86) BS01 CLR N/A N/A P08034 N/A
    1760 8qjf:J (2.86) BS01 CLR N/A N/A P08034 N/A
    1761 8qjf:K (2.86) BS01 CLR N/A N/A P08034 N/A
    1762 8qjf:L (2.86) BS01 CLR N/A N/A P08034 N/A
    1763 8qjf:M (2.86) BS01 CLR N/A N/A P08034 N/A
    1764 8qk6:A (3.18) BS01 CLR N/A N/A P08034 N/A
    1765 8qk6:A (3.18) BS02 CLR N/A N/A P08034 N/A
    1766 8qk6:B (3.18) BS01 CLR N/A N/A P08034 N/A
    1767 8qk6:B (3.18) BS02 CLR N/A N/A P08034 N/A
    1768 8qk6:C (3.18) BS01 CLR N/A N/A P08034 N/A
    1769 8qk6:C (3.18) BS02 CLR N/A N/A P08034 N/A
    1770 8qk6:D (3.18) BS01 CLR N/A N/A P08034 N/A
    1771 8qk6:D (3.18) BS02 CLR N/A N/A P08034 N/A
    1772 8qk6:E (3.18) BS01 CLR N/A N/A P08034 N/A
    1773 8qk6:E (3.18) BS02 CLR N/A N/A P08034 N/A
    1774 8qk6:F (3.18) BS01 CLR N/A N/A P08034 N/A
    1775 8qk6:F (3.18) BS02 CLR N/A N/A P08034 N/A
    1776 8qki:A (3.46) BS01 CLR N/A N/A P08034 N/A
    1777 8qki:A (3.46) BS02 CLR N/A N/A P08034 N/A
    1778 8qki:B (3.46) BS01 CLR N/A N/A P08034 N/A
    1779 8qki:C (3.46) BS01 CLR N/A N/A P08034 N/A
    1780 8qki:D (3.46) BS01 CLR N/A N/A P08034 N/A
    1781 8qki:E (3.46) BS01 CLR N/A N/A P08034 N/A
    1782 8qki:F (3.46) BS01 CLR N/A N/A P08034 N/A
    1783 8rln:A (2.43) BS01 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    1784 8rln:A (2.43) BS02 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    1785 8rln:A (2.43) BS03 CLR N/A GO:0042597 ... P0ABE7
    P29274    		 38751633
    1786 8rqq:A (2.37) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    1787 8rqq:A (2.37) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    1788 8rqq:A (2.37) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 38585376
    1789 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    1790 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    1791 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    1792 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    1793 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    1794 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    1795 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    1796 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    1797 8sg1:R (2.94) BS02 CLR ? GO:0004930 ... Q99788 38055679
    1798 8sgw:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    1799 8sgw:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    1800 8sgw:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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