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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 8ef6:M (3.2) BS07 CLR ? GO:0001965 ... P35372 36368306
    1402 8ef6:R (3.2) BS02 CLR ? GO:0001965 ... P35372 36368306
    1403 8ef6:R (3.2) BS03 CLR ? GO:0001965 ... P35372 36368306
    1404 8ef6:R (3.2) BS04 CLR ? GO:0001965 ... P35372 36368306
    1405 8ef6:R (3.2) BS05 CLR ? GO:0001965 ... P35372 36368306
    1406 8ef6:R (3.2) BS06 CLR ? GO:0001965 ... P35372 36368306
    1407 8ef6:R (3.2) BS07 CLR ? GO:0001965 ... P35372 36368306
    1408 8efl:M (3.2) BS02 CLR ? GO:0001965 ... P35372 36368306
    1409 8efl:M (3.2) BS04 CLR ? GO:0001965 ... P35372 36368306
    1410 8efl:M (3.2) BS05 CLR ? GO:0001965 ... P35372 36368306
    1411 8efl:M (3.2) BS06 CLR ? GO:0001965 ... P35372 36368306
    1412 8efl:M (3.2) BS07 CLR ? GO:0001965 ... P35372 36368306
    1413 8efl:R (3.2) BS02 CLR ? GO:0001965 ... P35372 36368306
    1414 8efl:R (3.2) BS03 CLR ? GO:0001965 ... P35372 36368306
    1415 8efl:R (3.2) BS04 CLR ? GO:0001965 ... P35372 36368306
    1416 8efl:R (3.2) BS05 CLR ? GO:0001965 ... P35372 36368306
    1417 8efl:R (3.2) BS06 CLR ? GO:0001965 ... P35372 36368306
    1418 8efl:R (3.2) BS07 CLR ? GO:0001965 ... P35372 36368306
    1419 8efo:M (2.8) BS02 CLR ? GO:0001965 ... P35372 36368306
    1420 8efo:M (2.8) BS03 CLR ? GO:0001965 ... P35372 36368306
    1421 8efo:M (2.8) BS04 CLR ? GO:0001965 ... P35372 36368306
    1422 8efo:M (2.8) BS06 CLR ? GO:0001965 ... P35372 36368306
    1423 8efo:M (2.8) BS07 CLR ? GO:0001965 ... P35372 36368306
    1424 8efo:M (2.8) BS08 CLR ? GO:0001965 ... P35372 36368306
    1425 8efo:M (2.8) BS09 CLR ? GO:0001965 ... P35372 36368306
    1426 8efo:R (2.8) BS02 CLR ? GO:0001965 ... P35372 36368306
    1427 8efo:R (2.8) BS03 CLR ? GO:0001965 ... P35372 36368306
    1428 8efo:R (2.8) BS04 CLR ? GO:0001965 ... P35372 36368306
    1429 8efo:R (2.8) BS05 CLR ? GO:0001965 ... P35372 36368306
    1430 8efo:R (2.8) BS06 CLR ? GO:0001965 ... P35372 36368306
    1431 8efo:R (2.8) BS07 CLR ? GO:0001965 ... P35372 36368306
    1432 8efo:R (2.8) BS08 CLR ? GO:0001965 ... P35372 36368306
    1433 8eog:K (3.3) BS01 CLR ? GO:0005216 ... Q13936 37196677
    1434 8eog:K (3.3) BS02 CLR ? GO:0005216 ... Q13936 37196677
    1435 8epl:A (3.1) BS02 CLR ? GO:0005216 ... Q15878 36446785
    1436 8epl:A (3.1) BS03 CLR ? GO:0005216 ... Q15878 36446785
    1437 8epl:A (3.1) BS04 CLR ? GO:0005216 ... Q15878 36446785
    1438 8epl:A (3.1) BS05 CLR ? GO:0005216 ... Q15878 36446785
    1439 8esk:A (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    1440 8esk:D (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    1441 8f1d:A (2.94) BS02 CLR ? GO:0001508 ... P48547 37812700
    1442 8f1d:B (2.94) BS02 CLR ? GO:0001508 ... P48547 37812700
    1443 8f1d:C (2.94) BS02 CLR ? GO:0001508 ... P48547 37812700
    1444 8f1d:D (2.94) BS02 CLR ? GO:0001508 ... P48547 37812700
    1445 8f2s:A (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    1446 8f2s:D (2.9) BS02 CLR ? GO:0004888 ... P02710 37264005
    1447 8f6y:A (2.79) BS03 CLR ? GO:0004888 ... P02710 37264005
    1448 8f6y:C (2.79) BS01 CLR ? GO:0004888 ... P02712 37264005
    1449 8f6y:D (2.79) BS03 CLR ? GO:0004888 ... P02710 37264005
    1450 8f6z:A (2.7) BS02 CLR ? GO:0004888 ... P02710 37264005
    1451 8f6z:C (2.7) BS01 CLR ? GO:0004888 ... P02712 37264005
    1452 8f6z:D (2.7) BS03 CLR ? GO:0004888 ... P02710 37264005
    1453 8f7q:M (3.22) BS03 CLR ? GO:0001965 ... P35372 36638794
    1454 8f7q:M (3.22) BS04 CLR ? GO:0001965 ... P35372 36638794
    1455 8f7q:M (3.22) BS05 CLR ? GO:0001965 ... P35372 36638794
    1456 8f7q:M (3.22) BS06 CLR ? GO:0001965 ... P35372 36638794
    1457 8f7q:M (3.22) BS07 CLR ? GO:0001965 ... P35372 36638794
    1458 8f7q:R (3.22) BS02 CLR ? GO:0001965 ... P35372 36638794
    1459 8f7q:R (3.22) BS03 CLR ? GO:0001965 ... P35372 36638794
    1460 8f7q:R (3.22) BS04 CLR ? GO:0001965 ... P35372 36638794
    1461 8f7q:R (3.22) BS05 CLR ? GO:0001965 ... P35372 36638794
    1462 8f7q:R (3.22) BS06 CLR ? GO:0001965 ... P35372 36638794
    1463 8f7q:R (3.22) BS07 CLR ? GO:0001965 ... P35372 36638794
    1464 8f7r:M (3.28) BS03 CLR ? GO:0001965 ... P35372 36638794
    1465 8f7r:M (3.28) BS04 CLR ? GO:0001965 ... P35372 36638794
    1466 8f7r:M (3.28) BS05 CLR ? GO:0001965 ... P35372 36638794
    1467 8f7r:M (3.28) BS06 CLR ? GO:0001965 ... P35372 36638794
    1468 8f7r:M (3.28) BS07 CLR ? GO:0001965 ... P35372 36638794
    1469 8f7r:R (3.28) BS02 CLR ? GO:0001965 ... P35372 36638794
    1470 8f7r:R (3.28) BS03 CLR ? GO:0001965 ... P35372 36638794
    1471 8f7r:R (3.28) BS04 CLR ? GO:0001965 ... P35372 36638794
    1472 8f7r:R (3.28) BS05 CLR ? GO:0001965 ... P35372 36638794
    1473 8f7r:R (3.28) BS06 CLR ? GO:0001965 ... P35372 36638794
    1474 8f7r:R (3.28) BS07 CLR ? GO:0001965 ... P35372 36638794
    1475 8f7r:R (3.28) BS08 CLR ? GO:0001965 ... P35372 36638794
    1476 8f7s:D (3.0) BS03 CLR ? GO:0004930 ... P41143 36638794
    1477 8f7w:R (3.19) BS02 CLR ? GO:0004930 ... P41145 36638794
    1478 8fd7:K (3.1) BS03 CLR ? GO:0005216 ... Q13936 36973510
    1479 8fd7:K (3.1) BS04 CLR ? GO:0005216 ... Q13936 36973510
    1480 8fhd:A (3.1) BS03 CLR ? GO:0001508 ... Q9UQD0 36696443
    1481 8fhs:A (3.3) BS04 CLR ? GO:0002520 ... Q13936 37972591
    1482 8fhs:A (3.3) BS05 CLR ? GO:0002520 ... Q13936 37972591
    1483 8fhs:A (3.3) BS06 CLR ? GO:0002520 ... Q13936 37972591
    1484 8fhs:A (3.3) BS07 CLR ? GO:0002520 ... Q13936 37972591
    1485 8fyn:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36841804
    1486 8fyn:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36841804
    1487 8fyn:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36841804
    1488 8g05:R (3.0) BS02 CLR ? GO:0001604 ... Q9NQS5 37709767
    1489 8ghf:A (2.7) BS03 CLR ? GO:0005216 ... Q12791 37098056
    1490 8ghf:A (2.7) BS04 CLR ? GO:0005216 ... Q12791 37098056
    1491 8ghf:A (2.7) BS05 CLR ? GO:0005216 ... Q12791 37098056
    1492 8ghf:B (2.7) BS03 CLR ? GO:0005216 ... Q12791 37098056
    1493 8ghf:B (2.7) BS04 CLR ? GO:0005216 ... Q12791 37098056
    1494 8ghf:B (2.7) BS05 CLR ? GO:0005216 ... Q12791 37098056
    1495 8ghf:C (2.7) BS03 CLR ? GO:0005216 ... Q12791 37098056
    1496 8ghf:C (2.7) BS04 CLR ? GO:0005216 ... Q12791 37098056
    1497 8ghf:D (2.7) BS03 CLR ? GO:0005216 ... Q12791 37098056
    1498 8ghf:D (2.7) BS04 CLR ? GO:0005216 ... Q12791 37098056
    1499 8gi8:A (2.88) BS02 CLR N/A GO:0016020 ... N/A 37474513
    1500 8gi8:A (2.88) BS03 CLR N/A GO:0016020 ... N/A 37474513
    1501 8gi8:A (2.88) BS04 CLR N/A GO:0016020 ... N/A 37474513
    1502 8gi9:A (2.84) BS02 CLR N/A GO:0016020 ... N/A 37474513
    1503 8gi9:A (2.84) BS03 CLR N/A GO:0016020 ... N/A 37474513
    1504 8gi9:A (2.84) BS04 CLR N/A GO:0016020 ... N/A 37474513
    1505 8gi9:A (2.84) BS05 CLR N/A GO:0016020 ... N/A 37474513
    1506 8gi9:A (2.84) BS06 CLR N/A GO:0016020 ... N/A 37474513
    1507 8gi9:A (2.84) BS07 CLR N/A GO:0016020 ... N/A 37474513
    1508 8gne:A (2.3) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36894319
    1509 8gne:A (2.3) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36894319
    1510 8gne:A (2.3) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 36894319
    1511 8gnk:A (3.1) BS04 CLR ? GO:0003333 ... P23978 37400654
    1512 8gnk:A (3.1) BS05 CLR ? GO:0003333 ... P23978 37400654
    1513 8gnk:A (3.1) BS06 CLR ? GO:0003333 ... P23978 37400654
    1514 8gnk:A (3.1) BS07 CLR ? GO:0003333 ... P23978 37400654
    1515 8gnk:A (3.1) BS08 CLR ? GO:0003333 ... P23978 37400654
    1516 8h0q:R (3.3) BS02 CLR ? GO:0004930 ... P30550 N/A
    1517 8h0q:R (3.3) BS03 CLR ? GO:0004930 ... P30550 N/A
    1518 8h8j:C (3.2) BS02 CLR ? GO:0004930 ... Q9HC97 36543774
    1519 8h8j:C (3.2) BS03 CLR ? GO:0004930 ... Q9HC97 36543774
    1520 8ha0:R (2.62) BS01 CLR ? GO:0004888 ... Q03431 36482086
    1521 8ha0:R (2.62) BS02 CLR ? GO:0004888 ... Q03431 36482086
    1522 8ha0:R (2.62) BS03 CLR ? GO:0004888 ... Q03431 36482086
    1523 8ha0:R (2.62) BS04 CLR ? GO:0004888 ... Q03431 36482086
    1524 8haf:R (3.25) BS01 CLR ? GO:0004888 ... Q03431 36482086
    1525 8haf:R (3.25) BS02 CLR ? GO:0004888 ... Q03431 36482086
    1526 8haf:R (3.25) BS03 CLR ? GO:0004888 ... Q03431 36482086
    1527 8hdo:R (2.87) BS01 CLR ? GO:0001609 ... P29275 36575181
    1528 8hdo:R (2.87) BS02 CLR ? GO:0001609 ... P29275 36575181
    1529 8hdo:R (2.87) BS03 CLR ? GO:0001609 ... P29275 36575181
    1530 8hdo:R (2.87) BS04 CLR ? GO:0001609 ... P29275 36575181
    1531 8hdo:R (2.87) BS05 CLR ? GO:0001609 ... P29275 36575181
    1532 8hdo:R (2.87) BS06 CLR ? GO:0001609 ... P29275 36575181
    1533 8hdo:R (2.87) BS07 CLR ? GO:0001609 ... P29275 36575181
    1534 8hdp:R (3.2) BS02 CLR ? GO:0001609 ... P29275 36575181
    1535 8hdp:R (3.2) BS03 CLR ? GO:0001609 ... P29275 36575181
    1536 8hdp:R (3.2) BS04 CLR ? GO:0001609 ... P29275 36575181
    1537 8hdp:R (3.2) BS05 CLR ? GO:0001609 ... P29275 36575181
    1538 8hk2:A (2.9) BS01 CLR ? GO:0002430 ... Q16581 37169960
    1539 8hk2:A (2.9) BS02 CLR ? GO:0002430 ... Q16581 37169960
    1540 8hnk:R (3.01) BS01 CLR 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45    		 38177682
    1541 8hnl:R (2.98) BS01 CLR 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45    		 38177682
    1542 8hnl:R (2.98) BS02 CLR 1.13.12.13 GO:0001525 ... P0ABE7
    P49682
    Q9GV45    		 38177682
    1543 8hsi:A (3.1) BS02 CLR ? GO:0016020 ... Q8NBN3 38992057
    1544 8hsi:A (3.1) BS03 CLR ? GO:0016020 ... Q8NBN3 38992057
    1545 8i2g:R (2.8) BS01 CLR ? GO:0004930 ... P23945 36720854
    1546 8i2g:R (2.8) BS02 CLR ? GO:0004930 ... P23945 36720854
    1547 8i2g:R (2.8) BS03 CLR ? GO:0004930 ... P23945 36720854
    1548 8i2g:R (2.8) BS04 CLR ? GO:0004930 ... P23945 36720854
    1549 8i2g:R (2.8) BS05 CLR ? GO:0004930 ... P23945 36720854
    1550 8i2g:R (2.8) BS06 CLR ? GO:0004930 ... P23945 36720854
    1551 8i2g:R (2.8) BS07 CLR ? GO:0004930 ... P23945 36720854
    1552 8i2g:R (2.8) BS08 CLR ? GO:0004930 ... P23945 36720854
    1553 8ijl:A (2.62) BS04 CLR 7.2.2.13
    7.2.2.19    		 GO:0000166 ... P54708 37482134
    1554 8ijl:B (2.62) BS01 CLR ? GO:0001666 ... P07340 37482134
    1555 8ijm:B (3.13) BS01 CLR ? GO:0001666 ... P07340 37482134
    1556 8ijv:B (2.1) BS01 CLR ? GO:0001671 ... P18434 37726448
    1557 8ijv:B (2.1) BS02 CLR ? GO:0001671 ... P18434 37726448
    1558 8ijw:B (2.19) BS01 CLR ? GO:0001671 ... P18434 37726448
    1559 8ijw:B (2.19) BS02 CLR ? GO:0001671 ... P18434 37726448
    1560 8ijx:B (2.08) BS01 CLR ? GO:0001671 ... P18434 37726448
    1561 8im7:C (3.4) BS01 CLR ? GO:0000139 ... Q96BI3 37759382
    1562 8im7:C (3.4) BS02 CLR ? GO:0000139 ... Q96BI3 37759382
    1563 8irr:R (3.2) BS02 CLR ? GO:0001588 ... P21728 37221270
    1564 8irr:R (3.2) BS03 CLR ? GO:0001588 ... P21728 37221270
    1565 8iru:R (3.2) BS02 CLR N/A GO:0004930 ... N/A 37221270
    1566 8iru:R (3.2) BS03 CLR N/A GO:0004930 ... N/A 37221270
    1567 8iru:R (3.2) BS04 CLR N/A GO:0004930 ... N/A 37221270
    1568 8iru:R (3.2) BS05 CLR N/A GO:0004930 ... N/A 37221270
    1569 8irv:R (3.1) BS02 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1570 8irv:R (3.1) BS03 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1571 8irv:R (3.1) BS04 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1572 8irv:R (3.1) BS05 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1573 8irv:R (3.1) BS06 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1574 8irv:R (3.1) BS07 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1575 8irv:R (3.1) BS08 CLR ? GO:0001588 ... P0ABE7
    P21918    		 37221270
    1576 8ivl:A (2.7) BS01 CLR ? GO:0005504 ... O15540 38429999
    1577 8iz4:R (2.93) BS03 CLR ? GO:0004930 ... Q9UPC5 N/A
    1578 8izb:R (3.06) BS03 CLR ? GO:0004930 ... Q9BXC1 38048360
    1579 8izb:R (3.06) BS04 CLR ? GO:0004930 ... Q9BXC1 38048360
    1580 8j6m:A (2.77) BS02 CLR ? GO:0003723 ... Q9NXL6 38664565
    1581 8j6m:A (2.77) BS03 CLR ? GO:0003723 ... Q9NXL6 38664565
    1582 8j6m:B (2.77) BS01 CLR ? GO:0003723 ... Q9NXL6 38664565
    1583 8j6m:B (2.77) BS02 CLR ? GO:0003723 ... Q9NXL6 38664565
    1584 8j6m:B (2.77) BS03 CLR ? GO:0003723 ... Q9NXL6 38664565
    1585 8j6m:B (2.77) BS04 CLR ? GO:0003723 ... Q9NXL6 38664565
    1586 8j6p:R (2.55) BS02 CLR ? GO:0004930 ... Q8TDS4 37993467
    1587 8j6p:R (2.55) BS04 CLR ? GO:0004930 ... Q8TDS4 37993467
    1588 8j6q:R (2.6) BS02 CLR ? GO:0004930 ... Q8TDS4 37993467
    1589 8j6q:R (2.6) BS04 CLR ? GO:0004930 ... Q8TDS4 37993467
    1590 8j7f:A (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1591 8j7f:A (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1592 8j7f:A (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1593 8j7f:B (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1594 8j7f:B (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1595 8j7f:B (2.6) BS05 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1596 8j7f:C (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1597 8j7f:C (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1598 8j7f:D (2.6) BS02 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1599 8j7f:D (2.6) BS03 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    1600 8j7f:D (2.6) BS04 CLR ? GO:0005216 ... R1EKX3
    R1FVI4    		 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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