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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1001 7t92:A (3.1) BS03 CLR 2.3.2.36 GO:0005778 ... G2Q1C9 35768507
    1002 7t92:C (3.1) BS03 CLR 2.3.2.27 GO:0005777 ... G2Q0E2 35768507
    1003 7t92:C (3.1) BS07 CLR 2.3.2.27 GO:0005777 ... G2Q0E2 35768507
    1004 7tai:A (3.2) BS06 CLR 1.16.1.- GO:0000139 ... Q8NFT2 37983176
    1005 7tai:B (3.2) BS05 CLR 1.16.1.- GO:0000139 ... Q8NFT2 37983176
    1006 7tai:C (3.2) BS07 CLR 1.16.1.- GO:0000139 ... Q8NFT2 37983176
    1007 7tbw:A (3.1) BS01 CLR 7.6.2.1 GO:0002790 ... O95477 37181814
    1008 7tby:A (4.0) BS01 CLR 7.6.2.1 GO:0002790 ... O95477 37181814
    1009 7tc0:A (3.1) BS01 CLR 7.6.2.1 GO:0002790 ... O95477 37181814
    1010 7tj9:A (2.9) BS01 CLR ? GO:0001518 ... Q01118 35301303
    1011 7tj9:A (2.9) BS02 CLR ? GO:0001518 ... Q01118 35301303
    1012 7tvz:A (3.6) BS01 CLR ? GO:0005452 ... P02730 35655099
    1013 7tvz:B (3.6) BS01 CLR ? GO:0005452 ... P02730 35655099
    1014 7ty4:A (2.99) BS01 CLR ? GO:0005452 ... P02730 37679563
    1015 7ty4:B (2.99) BS01 CLR ? GO:0005452 ... P02730 37679563
    1016 7ty6:A (2.98) BS01 CLR ? GO:0005452 ... P02730 37679563
    1017 7ty6:A (2.98) BS03 CLR ? GO:0005452 ... P02730 37679563
    1018 7ty6:A (2.98) BS04 CLR ? GO:0005452 ... P02730 37679563
    1019 7ty6:B (2.98) BS01 CLR ? GO:0005452 ... P02730 37679563
    1020 7ty6:B (2.98) BS02 CLR ? GO:0005452 ... P02730 37679563
    1021 7ty6:B (2.98) BS04 CLR ? GO:0005452 ... P02730 37679563
    1022 7ty7:A (3.37) BS02 CLR ? GO:0005452 ... P02730 37679563
    1023 7ty7:A (3.37) BS03 CLR ? GO:0005452 ... P02730 37679563
    1024 7ty7:B (3.37) BS02 CLR ? GO:0005452 ... P02730 37679563
    1025 7ty7:B (3.37) BS03 CLR ? GO:0005452 ... P02730 37679563
    1026 7ty7:B (3.37) BS04 CLR ? GO:0005452 ... P02730 37679563
    1027 7ty8:A (3.18) BS01 CLR ? GO:0005452 ... P02730 37679563
    1028 7ty8:A (3.18) BS03 CLR ? GO:0005452 ... P02730 37679563
    1029 7ty8:B (3.18) BS01 CLR ? GO:0005452 ... P02730 37679563
    1030 7ty8:B (3.18) BS03 CLR ? GO:0005452 ... P02730 37679563
    1031 7ty8:B (3.18) BS04 CLR ? GO:0005452 ... P02730 37679563
    1032 7tya:A (3.07) BS01 CLR ? GO:0005452 ... P02730 37679563
    1033 7tya:A (3.07) BS02 CLR ? GO:0005452 ... P02730 37679563
    1034 7tya:A (3.07) BS03 CLR ? GO:0005452 ... P02730 37679563
    1035 7tya:B (3.07) BS01 CLR ? GO:0005452 ... P02730 37679563
    1036 7tya:B (3.07) BS02 CLR ? GO:0005452 ... P02730 37679563
    1037 7uhg:A (3.0) BS02 CLR ? GO:0005216 ... Q01668 35477996
    1038 7uhg:A (3.0) BS03 CLR ? GO:0005216 ... Q01668 35477996
    1039 7uhg:A (3.0) BS04 CLR ? GO:0005216 ... Q01668 35477996
    1040 7ura:A (3.11) BS03 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1041 7ura:A (3.11) BS04 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1042 7urc:A (3.14) BS02 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1043 7urc:A (3.14) BS03 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1044 7urc:A (3.14) BS04 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1045 7urc:A (3.14) BS05 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1046 7urc:A (3.14) BS06 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1047 7urc:A (3.14) BS07 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1048 7urc:A (3.14) BS08 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1049 7urd:A (2.92) BS03 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1050 7urd:A (2.92) BS04 CLR 2.3.1.250 GO:0005783 ... Q9H237 35831507
    1051 7usw:A (3.1) BS02 CLR ? GO:0005216 ... D3KZG3 36224384
    1052 7usw:B (3.1) BS02 CLR ? GO:0005216 ... D3KZG3 36224384
    1053 7usx:A (3.09) BS02 CLR ? GO:0005216 ... D3KZG3 36224384
    1054 7usx:B (3.09) BS02 CLR ? GO:0005216 ... D3KZG3 36224384
    1055 7uz3:C (2.35) BS02 CLR ? GO:0005452 ... P02730 35835865
    1056 7uz3:C (2.35) BS03 CLR ? GO:0005452 ... P02730 35835865
    1057 7uz3:E (2.35) BS04 CLR ? GO:0005452 ... P02730 35835865
    1058 7uz3:E (2.35) BS05 CLR ? GO:0005452 ... P02730 35835865
    1059 7uze:A (2.4) BS01 CLR ? GO:0003091 ... P29972 35835865
    1060 7uze:B (2.4) BS01 CLR ? GO:0003091 ... P29972 35835865
    1061 7uze:C (2.4) BS01 CLR ? GO:0003091 ... P29972 35835865
    1062 7uze:D (2.4) BS01 CLR ? GO:0003091 ... P29972 35835865
    1063 7uzq:L (2.17) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1064 7uzq:L (2.17) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1065 7v07:C (2.8) BS02 CLR ? GO:0005452 ... P02730 35835865
    1066 7v07:C (2.8) BS03 CLR ? GO:0005452 ... P02730 35835865
    1067 7v07:E (2.8) BS02 CLR ? GO:0005452 ... P02730 35835865
    1068 7v0k:L (2.4) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1069 7v0k:L (2.4) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1070 7v0k:O (2.4) BS01 CLR ? GO:0005452 ... P02730 35835865
    1071 7v0k:O (2.4) BS02 CLR ? GO:0005452 ... P02730 35835865
    1072 7v0k:P (2.4) BS01 CLR ? GO:0005452 ... P02730 35835865
    1073 7v0k:P (2.4) BS02 CLR ? GO:0005452 ... P02730 35835865
    1074 7v0s:L (2.5) BS01 CLR ? GO:0005515 ... Q02094 35835865
    1075 7v0s:L (2.5) BS02 CLR ? GO:0005515 ... Q02094 35835865
    1076 7v19:C (3.3) BS01 CLR ? GO:0005452 ... P02730 35835865
    1077 7v19:E (3.3) BS02 CLR ? GO:0005452 ... P02730 35835865
    1078 7v3z:A (3.29) BS02 CLR ? GO:0004930 ... P00323
    P21554    		 34596399
    1079 7v62:A (3.25) BS01 CLR ? GO:0008289 ... P22059 35613096
    1080 7v62:B (3.25) BS01 CLR ? GO:0008289 ... P22059 35613096
    1081 7v62:C (3.25) BS01 CLR ? GO:0008289 ... P22059 35613096
    1082 7v62:D (3.25) BS01 CLR ? GO:0008289 ... P22059 35613096
    1083 7v6y:A (3.5) BS01 CLR ? GO:0008158 ... Q61115 34174188
    1084 7v6y:A (3.5) BS02 CLR ? GO:0008158 ... Q61115 34174188
    1085 7v6z:A (3.64) BS01 CLR ? GO:0008158 ... Q61115 34174188
    1086 7v73:A (3.52) BS01 CLR N/A GO:0008271 ... N/A 36266333
    1087 7v73:A (3.52) BS02 CLR N/A GO:0008271 ... N/A 36266333
    1088 7v74:A (3.63) BS02 CLR N/A GO:0008271 ... N/A 36266333
    1089 7v75:A (3.57) BS01 CLR N/A GO:0008271 ... N/A 36266333
    1090 7vab:R (3.2) BS02 CLR ? GO:0002029 ... P48546 35217653
    1091 7vab:R (3.2) BS03 CLR ? GO:0002029 ... P48546 35217653
    1092 7vfx:R (2.8) BS02 CLR ? GO:0001664 ... P21462 36064945
    1093 7vfx:R (2.8) BS03 CLR ? GO:0001664 ... P21462 36064945
    1094 7vgy:A (3.1) BS01 CLR ? GO:0004930 ... P48039 35075127
    1095 7vgz:B (3.3) BS02 CLR ? GO:0004930 ... P48039 35075127
    1096 7vl8:R (2.9) BS01 CLR ? GO:0002407 ... P32246 34949837
    1097 7vl9:R (2.6) BS01 CLR ? GO:0002407 ... P32246 34949837
    1098 7vla:R (2.7) BS01 CLR ? GO:0002407 ... P32246 34949837
    1099 7vod:A (3.3) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    1100 7vod:A (3.3) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    1101 7voe:A (2.9) BS01 CLR ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    1102 7voe:A (2.9) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 34887590
    1103 7vr7:A (3.49) BS03 CLR ? GO:0005313 ... P43004 35953475
    1104 7vr7:A (3.49) BS04 CLR ? GO:0005313 ... P43004 35953475
    1105 7vr8:A (3.58) BS02 CLR ? GO:0005313 ... P43004 35953475
    1106 7vuy:R (2.84) BS01 CLR ? GO:0004930 ... Q96LB1 34789875
    1107 7vuz:R (2.89) BS01 CLR ? GO:0004930 ... Q96LB1 34789875
    1108 7vv3:R (2.97) BS01 CLR ? GO:0004930 ... Q96LB1 34789875
    1109 7vv4:R (2.97) BS02 CLR ? GO:0004930 ... Q96LB1 34789875
    1110 7vv5:R (2.76) BS01 CLR ? GO:0004930 ... Q96LB1 34789875
    1111 7vv6:R (3.3) BS01 CLR ? GO:0004930 ... Q96LB1 34789875
    1112 7w2z:R (2.8) BS02 CLR ? GO:0001616 ... Q92847 35027551
    1113 7w2z:R (2.8) BS03 CLR ? GO:0001616 ... Q92847 35027551
    1114 7w9w:A (2.02) BS02 CLR N/A GO:0016020 ... N/A 35114111
    1115 7wc4:A (3.2) BS01 CLR ? GO:0004930 ... P28223 35084960
    1116 7wc4:A (3.2) BS02 CLR ? GO:0004930 ... P28223 35084960
    1117 7wc5:A (3.2) BS02 CLR ? GO:0004930 ... P28223 35084960
    1118 7wc6:A (2.6) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1119 7wc7:A (2.6) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1120 7wc8:A (2.45) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1121 7wc8:A (2.45) BS04 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1122 7wc8:A (2.45) BS05 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1123 7wc9:A (2.5) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1124 7wc9:A (2.5) BS03 CLR ? GO:0004930 ... P0ABE7
    P28223    		 35084960
    1125 7we4:A (2.7) BS02 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1126 7we4:A (2.7) BS08 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1127 7we4:A (2.7) BS12 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1128 7wel:A (3.2) BS02 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1129 7wel:A (3.2) BS03 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1130 7wel:A (3.2) BS06 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1131 7wel:A (3.2) BS09 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1132 7wfr:A (3.0) BS02 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1133 7wfr:A (3.0) BS06 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1134 7wfr:A (3.0) BS09 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1135 7wfr:A (3.0) BS10 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1136 7wfw:A (3.1) BS01 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1137 7wfw:A (3.1) BS04 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1138 7wfw:A (3.1) BS06 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1139 7wfw:A (3.1) BS08 CLR ? GO:0001518 ... Q9Y5Y9 35858452
    1140 7wgd:A (3.2) BS02 CLR ? GO:0016020 ... Q7K4Y6 35796008
    1141 7wgt:A (2.75) BS02 CLR ? GO:0016020 ... Q7K4Y6 35796008
    1142 7wld:K (2.53) BS03 CLR 3.-.-.- GO:0003923 ... Q92643 35551457
    1143 7wld:S (2.53) BS01 CLR ? GO:0005515 ... Q96S52 35551457
    1144 7wld:S (2.53) BS02 CLR ? GO:0005515 ... Q96S52 35551457
    1145 7wld:S (2.53) BS03 CLR ? GO:0005515 ... Q96S52 35551457
    1146 7wld:U (2.53) BS01 CLR ? GO:0005515 ... Q9H490 35551457
    1147 7wld:U (2.53) BS03 CLR ? GO:0005515 ... Q9H490 35551457
    1148 7wld:U (2.53) BS04 CLR ? GO:0005515 ... Q9H490 35551457
    1149 7wlw:A (2.9) BS05 CLR ? GO:0016020 ... Q7K4Y6 35796008
    1150 7wq3:R (2.7) BS02 CLR ? GO:0004930 ... P47211 N/A
    1151 7wu4:R (3.4) BS01 CLR ? GO:0004888 ... Q5T601 35418679
    1152 7wu5:R (3.0) BS01 CLR ? GO:0004888 ... Q5T601 35418679
    1153 7wwb:A (3.86) BS02 CLR ? GO:0005654 ... Q8WWI5 35700727
    1154 7wwb:B (3.86) BS02 CLR ? GO:0005654 ... Q8WWI5 35700727
    1155 7wys:A (3.71) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1156 7wys:A (3.71) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1157 7wys:B (3.71) BS01 CLR ? GO:0001671 ... P05027 35380894
    1158 7wys:C (3.71) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1159 7wys:C (3.71) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1160 7wys:C (3.71) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1161 7wys:D (3.71) BS01 CLR ? GO:0001671 ... P05027 35380894
    1162 7wys:E (3.71) BS01 CLR ? GO:0001671 ... Q58K79 35380894
    1163 7wys:G (3.71) BS01 CLR ? GO:0001671 ... Q58K79 35380894
    1164 7wyt:A (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1165 7wyt:A (2.9) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1166 7wyt:C (2.9) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 35380894
    1167 7wyt:D (2.9) BS01 CLR ? GO:0001671 ... P05027 35380894
    1168 7wyt:E (2.9) BS01 CLR ? GO:0001671 ... Q58K79 35380894
    1169 7wyt:G (2.9) BS01 CLR ? GO:0001671 ... Q58K79 35380894
    1170 7wyu:A (3.4) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1171 7wyu:A (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1172 7wyu:C (3.4) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1173 7wyu:C (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1174 7wyu:E (3.4) BS01 CLR ? GO:0016020 ... Q70Q12 35380894
    1175 7wyu:G (3.4) BS01 CLR ? GO:0016020 ... Q70Q12 35380894
    1176 7wyv:A (3.7) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1177 7wyv:A (3.7) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1178 7wyv:C (3.7) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1179 7wyv:C (3.7) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1180 7wyw:A (3.8) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1181 7wyw:A (3.8) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1182 7wyw:C (3.8) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1183 7wyw:C (3.8) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1184 7wyx:A (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1185 7wyx:A (3.4) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1186 7wyx:C (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1187 7wyx:C (3.4) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1188 7wyy:A (3.9) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1189 7wyy:A (3.9) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1190 7wyy:C (3.9) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1191 7wyy:C (3.9) BS05 CLR ? GO:0000166 ... Q4H132 35380894
    1192 7wyz:A (3.4) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1193 7wyz:A (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1194 7wyz:B (3.4) BS01 CLR ? GO:0001671 ... C4IX13 35380894
    1195 7wyz:C (3.4) BS03 CLR ? GO:0000166 ... Q4H132 35380894
    1196 7wyz:C (3.4) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    1197 7wyz:D (3.4) BS01 CLR ? GO:0001671 ... C4IX13 35380894
    1198 7wyz:E (3.4) BS01 CLR ? GO:0016020 ... Q70Q12 35380894
    1199 7wyz:G (3.4) BS01 CLR ? GO:0016020 ... Q70Q12 35380894
    1200 7wz0:A (3.0) BS04 CLR ? GO:0000166 ... Q4H132 35380894
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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