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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 7mfi:C (2.81) BS01 CLR ? GO:0005634 ... Q3MHW7 34880501
    802 7mfi:D (2.81) BS01 CLR ? GO:0005634 ... Q3MHW7 34880501
    803 7mgw:A (3.5) BS04 CLR ? GO:0016020 ... P31645 34851672
    804 7mix:A (3.0) BS04 CLR ? GO:0001540 ... Q00975 34234349
    805 7mix:A (3.0) BS05 CLR ? GO:0001540 ... Q00975 34234349
    806 7mix:A (3.0) BS07 CLR ? GO:0001540 ... Q00975 34234349
    807 7mix:A (3.0) BS08 CLR ? GO:0001540 ... Q00975 34234349
    808 7miy:A (3.1) BS03 CLR ? GO:0001540 ... Q00975 34234349
    809 7miy:A (3.1) BS04 CLR ? GO:0001540 ... Q00975 34234349
    810 7miy:A (3.1) BS07 CLR ? GO:0001540 ... Q00975 34234349
    811 7miy:A (3.1) BS08 CLR ? GO:0001540 ... Q00975 34234349
    812 7n4u:A (3.34) BS01 CLR ? GO:0005319 ... Q9UHC9 34407950
    813 7n4u:B (3.34) BS01 CLR ? GO:0005319 ... Q9UHC9 34407950
    814 7n4v:A (3.58) BS01 CLR ? GO:0005319 ... Q9UHC9 34407950
    815 7n4v:A (3.58) BS02 CLR ? GO:0005319 ... Q9UHC9 34407950
    816 7n4v:B (3.58) BS01 CLR ? GO:0005319 ... Q9UHC9 34407950
    817 7n4v:B (3.58) BS02 CLR ? GO:0005319 ... Q9UHC9 34407950
    818 7n4x:A (3.33) BS01 CLR ? GO:0005319 ... Q9UHC9 34407950
    819 7n4x:A (3.33) BS02 CLR ? GO:0005319 ... Q9UHC9 34407950
    820 7n4x:A (3.33) BS03 CLR ? GO:0005319 ... Q9UHC9 34407950
    821 7n6q:A (3.87) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    822 7n6q:A (3.87) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    823 7n6q:B (3.87) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    824 7n6q:B (3.87) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    825 7n6q:C (3.87) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    826 7n6q:C (3.87) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    827 7n6q:D (3.87) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    828 7n6q:D (3.87) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    829 7n6r:A (3.93) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    830 7n6r:A (3.93) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    831 7n6r:A (3.93) BS04 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    832 7n6r:B (3.93) BS01 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    833 7n6r:B (3.93) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    834 7n6r:B (3.93) BS04 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    835 7n6r:C (3.93) BS02 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    836 7n6r:C (3.93) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    837 7n6r:C (3.93) BS04 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    838 7n6r:D (3.93) BS01 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    839 7n6r:D (3.93) BS03 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    840 7n6r:D (3.93) BS04 CLR 2.3.1.26 GO:0000062 ... O75908 N/A
    841 7na7:R (2.7) BS02 CLR ? GO:0001616 ... Q92847 N/A
    842 7na7:R (2.7) BS03 CLR ? GO:0001616 ... Q92847 N/A
    843 7na8:R (2.7) BS02 CLR ? GO:0001616 ... Q92847 N/A
    844 7neq:A (3.12) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 33838147
    845 7nf6:B (3.05) BS01 CLR ? GO:0003333 ... A0A6P3EL78 35577790
    846 7nf8:B (2.83) BS01 CLR ? GO:0003333 ... A0A6P3EL78 35577790
    847 7niu:A (4.2) BS01 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    848 7niu:A (4.2) BS02 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    849 7niv:A (3.6) BS02 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    850 7niv:A (3.6) BS03 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    851 7niv:A (3.6) BS04 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    852 7niv:A (3.6) BS05 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    853 7niv:A (3.6) BS06 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    854 7niv:A (3.6) BS07 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    855 7niw:A (3.8) BS01 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    856 7niw:A (3.8) BS02 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    857 7niw:A (3.8) BS03 CLR 7.6.2.1 GO:0005515 ... P21439 34385322
    858 7oca:E (3.4) BS01 CLR ? GO:0005515 ... Q5BJU5 34079129
    859 7oca:G (3.4) BS01 CLR ? GO:0005515 ... Q5BJU5 34079129
    860 7oce:E (3.1) BS01 CLR ? GO:0005515 ... Q5BJU5 34079129
    861 7oce:G (3.1) BS01 CLR ? GO:0005515 ... Q5BJU5 34079129
    862 7oj8:B (3.4) BS03 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 34282134
    863 7oj8:B (3.4) BS04 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 34282134
    864 7oji:A (3.4) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 34282134
    865 7oji:B (3.4) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 34282134
    866 7p00:R (2.71) BS02 CLR ? GO:0004930 ... P25103 34878828
    867 7p02:R (2.87) BS02 CLR ? GO:0004930 ... P25103 34878828
    868 7px4:A (2.25) BS01 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    869 7px4:A (2.25) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    870 7px4:A (2.25) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    871 7pxh:A (2.59) BS04 CLR ? GO:0005216 ... Q03720 34887422
    872 7pxh:B (2.59) BS04 CLR ? GO:0005216 ... Q03720 34887422
    873 7pyr:A (2.6) BS01 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    874 7pyr:A (2.6) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    875 7pyr:A (2.6) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 35174942
    876 7q1u:A (2.7) BS01 CLR 2.3.1.- GO:0000139 ... Q5VTY9 34890564
    877 7q6z:A (3.59) BS01 CLR 2.3.1.- GO:0000139 ... Q5VTY9 34890564
    878 7qtv:A (4.05) BS03 CLR 7.2.2.13 GO:0000166 ... P05024 35926706
    879 7qtv:A (4.05) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 35926706
    880 7qtv:C (4.05) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 35926706
    881 7qtv:E (4.05) BS01 CLR ? GO:0001671 ... Q58K79 35926706
    882 7qtv:G (4.05) BS01 CLR ? GO:0001671 ... Q58K79 35926706
    883 7r8a:A (2.9) BS01 CLR 7.6.2.- GO:0005515 ... Q9H222 34404721
    884 7r8b:A (3.1) BS01 CLR 7.6.2.- GO:0005515 ... Q9H222 34404721
    885 7r8b:A (3.1) BS02 CLR 7.6.2.- GO:0005515 ... Q9H222 34404721
    886 7r8b:B (3.1) BS01 CLR 7.6.2.- GO:0005515 ... Q9H221 34404721
    887 7r8d:A (3.2) BS01 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    888 7r8d:A (3.2) BS02 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    889 7r8d:A (3.2) BS03 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    890 7r8d:B (3.2) BS01 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    891 7r8d:B (3.2) BS02 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    892 7r8d:B (3.2) BS03 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    893 7r8e:A (3.7) BS03 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    894 7r8e:B (3.7) BS04 CLR 7.6.2.- GO:0000139 ... P45844 34404721
    895 7rhq:A (3.53) BS01 CLR ? GO:0008158 ... Q98SW6 35231446
    896 7rhq:G (3.53) BS01 CLR ? GO:0005515 ... P54826 35231446
    897 7rhr:A (3.0) BS01 CLR ? GO:0008158 ... Q98SW6 35231446
    898 7rhr:A (3.0) BS02 CLR ? GO:0008158 ... Q98SW6 35231446
    899 7rhr:A (3.0) BS03 CLR ? GO:0008158 ... Q98SW6 35231446
    900 7rkm:R (3.5) BS01 CLR ? GO:0004930 ... P69332 N/A
    901 7rm5:A (2.79) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 34462357
    902 7rm5:A (2.79) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 34462357
    903 7rm5:A (2.79) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 34462357
    904 7rm5:A (2.79) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 34462357
    905 7roq:A (4.1) BS01 CLR 7.6.2.1 GO:0002790 ... O95477 N/A
    906 7rr9:A (3.5) BS01 CLR 3.1.2.-
    7.6.2.-    		 GO:0000038 ... P33897 N/A
    907 7rr9:B (3.5) BS02 CLR 3.1.2.-
    7.6.2.-    		 GO:0000038 ... P33897 N/A
    908 7she:A (3.4) BS02 CLR ? GO:0004930 ... Q5T848 34793198
    909 7she:A (3.4) BS03 CLR ? GO:0004930 ... Q5T848 34793198
    910 7she:A (3.4) BS04 CLR ? GO:0004930 ... Q5T848 34793198
    911 7she:A (3.4) BS05 CLR ? GO:0004930 ... Q5T848 34793198
    912 7she:A (3.4) BS06 CLR ? GO:0004930 ... Q5T848 34793198
    913 7she:A (3.4) BS07 CLR ? GO:0004930 ... Q5T848 34793198
    914 7she:A (3.4) BS08 CLR ? GO:0004930 ... Q5T848 34793198
    915 7she:A (3.4) BS09 CLR ? GO:0004930 ... Q5T848 34793198
    916 7she:A (3.4) BS10 CLR ? GO:0004930 ... Q5T848 34793198
    917 7she:B (3.4) BS01 CLR ? GO:0004930 ... Q5T848 34793198
    918 7she:B (3.4) BS02 CLR ? GO:0004930 ... Q5T848 34793198
    919 7she:B (3.4) BS03 CLR ? GO:0004930 ... Q5T848 34793198
    920 7she:B (3.4) BS04 CLR ? GO:0004930 ... Q5T848 34793198
    921 7she:B (3.4) BS05 CLR ? GO:0004930 ... Q5T848 34793198
    922 7she:B (3.4) BS06 CLR ? GO:0004930 ... Q5T848 34793198
    923 7she:B (3.4) BS07 CLR ? GO:0004930 ... Q5T848 34793198
    924 7she:B (3.4) BS08 CLR ? GO:0004930 ... Q5T848 34793198
    925 7she:B (3.4) BS09 CLR ? GO:0004930 ... Q5T848 34793198
    926 7she:B (3.4) BS10 CLR ? GO:0004930 ... Q5T848 34793198
    927 7shf:A (3.4) BS01 CLR ? GO:0004930 ... Q5T848 34793198
    928 7shf:A (3.4) BS02 CLR ? GO:0004930 ... Q5T848 34793198
    929 7shf:A (3.4) BS03 CLR ? GO:0004930 ... Q5T848 34793198
    930 7shf:A (3.4) BS04 CLR ? GO:0004930 ... Q5T848 34793198
    931 7shf:A (3.4) BS05 CLR ? GO:0004930 ... Q5T848 34793198
    932 7shf:A (3.4) BS06 CLR ? GO:0004930 ... Q5T848 34793198
    933 7shf:A (3.4) BS07 CLR ? GO:0004930 ... Q5T848 34793198
    934 7shf:A (3.4) BS08 CLR ? GO:0004930 ... Q5T848 34793198
    935 7shf:A (3.4) BS09 CLR ? GO:0004930 ... Q5T848 34793198
    936 7shf:A (3.4) BS10 CLR ? GO:0004930 ... Q5T848 34793198
    937 7shf:B (3.4) BS01 CLR ? GO:0004930 ... Q5T848 34793198
    938 7shf:B (3.4) BS02 CLR ? GO:0004930 ... Q5T848 34793198
    939 7shf:B (3.4) BS03 CLR ? GO:0004930 ... Q5T848 34793198
    940 7shf:B (3.4) BS04 CLR ? GO:0004930 ... Q5T848 34793198
    941 7shf:B (3.4) BS05 CLR ? GO:0004930 ... Q5T848 34793198
    942 7shf:B (3.4) BS06 CLR ? GO:0004930 ... Q5T848 34793198
    943 7shf:B (3.4) BS07 CLR ? GO:0004930 ... Q5T848 34793198
    944 7shf:B (3.4) BS08 CLR ? GO:0004930 ... Q5T848 34793198
    945 7sil:A (2.7) BS06 CLR ? GO:0004930 ... P41180 34916296
    946 7sil:A (2.7) BS07 CLR ? GO:0004930 ... P41180 34916296
    947 7sil:A (2.7) BS08 CLR ? GO:0004930 ... P41180 34916296
    948 7sil:B (2.7) BS01 CLR ? GO:0004930 ... P41180 34916296
    949 7sil:B (2.7) BS07 CLR ? GO:0004930 ... P41180 34916296
    950 7sil:B (2.7) BS08 CLR ? GO:0004930 ... P41180 34916296
    951 7sil:B (2.7) BS09 CLR ? GO:0004930 ... P41180 34916296
    952 7sil:B (2.7) BS10 CLR ? GO:0004930 ... P41180 34916296
    953 7sim:A (2.7) BS04 CLR ? GO:0004930 ... P41180 34916296
    954 7sim:A (2.7) BS05 CLR ? GO:0004930 ... P41180 34916296
    955 7sim:A (2.7) BS06 CLR ? GO:0004930 ... P41180 34916296
    956 7sim:B (2.7) BS01 CLR ? GO:0004930 ... P41180 34916296
    957 7sim:B (2.7) BS05 CLR ? GO:0004930 ... P41180 34916296
    958 7sim:B (2.7) BS06 CLR ? GO:0004930 ... P41180 34916296
    959 7sk3:A (3.8) BS01 CLR ? GO:0001525 ... P25106 35857509
    960 7sk3:A (3.8) BS02 CLR ? GO:0001525 ... P25106 35857509
    961 7sk3:A (3.8) BS03 CLR ? GO:0001525 ... P25106 35857509
    962 7sk3:A (3.8) BS04 CLR ? GO:0001525 ... P25106 35857509
    963 7sk4:A (3.3) BS01 CLR ? GO:0001525 ... P25106 35857509
    964 7sk5:A (4.0) BS01 CLR ? GO:0001525 ... P25106 35857509
    965 7sk7:A (3.3) BS02 CLR ? GO:0001525 ... P25106 35857509
    966 7sk8:A (3.3) BS01 CLR ? GO:0001525 ... P25106 35857509
    967 7sk8:A (3.3) BS02 CLR ? GO:0001525 ... P25106 35857509
    968 7sk8:A (3.3) BS03 CLR ? GO:0001525 ... P25106 35857509
    969 7sk8:A (3.3) BS04 CLR ? GO:0001525 ... P25106 35857509
    970 7sk8:A (3.3) BS05 CLR ? GO:0001525 ... P25106 35857509
    971 7sk9:A (3.7) BS02 CLR ? GO:0001525 ... P25106 35857509
    972 7sk9:A (3.7) BS03 CLR ? GO:0001525 ... P25106 35857509
    973 7sl8:A (3.4) BS01 CLR ? GO:0000017 ... P13866 34880492
    974 7smm:A (2.5) BS01 CLR ? GO:0004888 ... P02710 35301478
    975 7smm:C (2.5) BS01 CLR ? GO:0004888 ... P02712 35301478
    976 7smm:D (2.5) BS01 CLR ? GO:0004888 ... P02710 35301478
    977 7smq:A (2.74) BS01 CLR ? GO:0004888 ... P02710 35301478
    978 7smq:A (2.74) BS02 CLR ? GO:0004888 ... P02710 35301478
    979 7smq:B (2.74) BS01 CLR ? GO:0004888 ... P02718 35301478
    980 7smq:B (2.74) BS02 CLR ? GO:0004888 ... P02718 35301478
    981 7smq:C (2.74) BS01 CLR ? GO:0004888 ... P02712 35301478
    982 7smq:C (2.74) BS02 CLR ? GO:0004888 ... P02712 35301478
    983 7smq:C (2.74) BS03 CLR ? GO:0004888 ... P02712 35301478
    984 7smq:D (2.74) BS02 CLR ? GO:0004888 ... P02710 35301478
    985 7smq:D (2.74) BS03 CLR ? GO:0004888 ... P02710 35301478
    986 7smq:E (2.74) BS01 CLR ? GO:0004888 ... P02714 35301478
    987 7smq:E (2.74) BS02 CLR ? GO:0004888 ... P02714 35301478
    988 7smr:A (2.77) BS03 CLR ? GO:0004888 ... P02710 35301478
    989 7smr:C (2.77) BS01 CLR ? GO:0004888 ... P02712 35301478
    990 7smr:D (2.77) BS03 CLR ? GO:0004888 ... P02710 35301478
    991 7sms:A (3.18) BS02 CLR ? GO:0004888 ... P02710 35301478
    992 7sms:C (3.18) BS02 CLR ? GO:0004888 ... P02712 35301478
    993 7sms:D (3.18) BS02 CLR ? GO:0004888 ... P02710 35301478
    994 7smt:A (2.56) BS02 CLR ? GO:0004888 ... P02710 35301478
    995 7smt:C (2.56) BS01 CLR ? GO:0004888 ... P02712 35301478
    996 7smt:D (2.56) BS02 CLR ? GO:0004888 ... P02710 35301478
    997 7sv7:A (3.8) BS06 CLR 5.6.1.6 GO:0005254 ... P13569 34995514
    998 7svd:A (2.7) BS06 CLR 5.6.1.6 GO:0005254 ... P13569 34995514
    999 7t2g:R (2.5) BS02 CLR ? GO:0004930 ... P0ABE7
    P42866    		 36411392
    1000 7t2g:R (2.5) BS03 CLR ? GO:0004930 ... P0ABE7
    P42866    		 36411392
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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