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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 7d93:C (3.65) BS02 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    602 7d93:C (3.65) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    603 7d93:C (3.65) BS08 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    604 7d93:D (3.65) BS01 CLR ? GO:0001671 ... P05027 33318128
    605 7d93:E (3.65) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    606 7d93:G (3.65) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    607 7d94:A (3.5) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    608 7d94:A (3.5) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    609 7d94:C (3.5) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    610 7d94:C (3.5) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    611 7d94:D (3.5) BS01 CLR ? GO:0001671 ... P05027 33318128
    612 7d94:E (3.5) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    613 7d94:G (3.5) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    614 7ddf:A (4.62) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    615 7ddf:A (4.62) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    616 7ddf:B (4.62) BS01 CLR ? GO:0001671 ... P05027 33318128
    617 7ddf:C (4.62) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    618 7ddf:C (4.62) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    619 7ddf:D (4.62) BS01 CLR ? GO:0001671 ... P05027 33318128
    620 7ddf:E (4.62) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    621 7ddf:G (4.62) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    622 7ddh:A (3.46) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    623 7ddh:A (3.46) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    624 7ddh:B (3.46) BS01 CLR ? GO:0001671 ... P05027 33318128
    625 7ddh:C (3.46) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    626 7ddh:C (3.46) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    627 7ddh:D (3.46) BS01 CLR ? GO:0001671 ... P05027 33318128
    628 7ddh:E (3.46) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    629 7ddh:G (3.46) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    630 7ddi:A (3.72) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    631 7ddi:A (3.72) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    632 7ddi:C (3.72) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    633 7ddi:C (3.72) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    634 7ddi:E (3.72) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    635 7ddi:G (3.72) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    636 7ddk:A (3.5) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    637 7ddk:A (3.5) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    638 7ddk:B (3.5) BS01 CLR ? GO:0001671 ... P05027 33318128
    639 7ddk:C (3.5) BS04 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    640 7ddk:C (3.5) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    641 7ddk:C (3.5) BS07 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    642 7ddk:D (3.5) BS01 CLR ? GO:0001671 ... P05027 33318128
    643 7ddk:E (3.5) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    644 7ddl:A (3.2) BS05 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    645 7ddl:A (3.2) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    646 7ddl:B (3.2) BS01 CLR ? GO:0001671 ... P05027 33318128
    647 7ddl:C (3.2) BS01 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    648 7ddl:C (3.2) BS06 CLR 7.2.2.13 GO:0000166 ... P05024 33318128
    649 7ddl:D (3.2) BS01 CLR ? GO:0001671 ... P05027 33318128
    650 7ddl:E (3.2) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    651 7ddl:G (3.2) BS01 CLR ? GO:0001671 ... Q58K79 33318128
    652 7df8:A (3.03) BS01 CLR ? GO:0005319 ... Q9UHC9 34272236
    653 7dfw:A (2.69) BS02 CLR ? GO:0005319 ... Q9UHC9 34272236
    654 7dfw:A (2.69) BS03 CLR ? GO:0005319 ... Q9UHC9 34272236
    655 7dfw:A (2.69) BS04 CLR ? GO:0005319 ... Q9UHC9 34272236
    656 7dfz:A (3.58) BS02 CLR ? GO:0005319 ... Q9UHC9 34272236
    657 7dfz:A (3.58) BS03 CLR ? GO:0005319 ... Q9UHC9 34272236
    658 7dfz:A (3.58) BS04 CLR ? GO:0005319 ... Q9UHC9 34272236
    659 7drt:B (2.2) BS01 CLR ? GO:0000139 ... Q5T9L3 34315898
    660 7dty:R (2.98) BS01 CLR ? GO:0002029 ... P48546 34254582
    661 7dty:R (2.98) BS02 CLR ? GO:0002029 ... P48546 34254582
    662 7duq:R (2.5) BS01 CLR ? GO:0004888 ... P43220 34145245
    663 7duq:R (2.5) BS02 CLR ? GO:0004888 ... P43220 34145245
    664 7duq:R (2.5) BS03 CLR ? GO:0004888 ... P43220 34145245
    665 7duq:R (2.5) BS04 CLR ? GO:0004888 ... P43220 34145245
    666 7dur:R (3.3) BS01 CLR ? GO:0004888 ... P43220 34145245
    667 7dur:R (3.3) BS02 CLR ? GO:0004888 ... P43220 34145245
    668 7dw9:R (2.6) BS02 CLR ? GO:0001992 ... P30518 33742150
    669 7dw9:R (2.6) BS03 CLR ? GO:0001992 ... P30518 33742150
    670 7e14:R (2.9) BS02 CLR ? GO:0004888 ... P43220 34145245
    671 7e14:R (2.9) BS03 CLR ? GO:0004888 ... P43220 34145245
    672 7e14:R (2.9) BS04 CLR ? GO:0004888 ... P43220 34145245
    673 7e14:R (2.9) BS05 CLR ? GO:0004888 ... P43220 34145245
    674 7e14:R (2.9) BS06 CLR ? GO:0004888 ... P43220 34145245
    675 7e2x:R (3.0) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    676 7e2x:R (3.0) BS03 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    677 7e2x:R (3.0) BS04 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    678 7e2y:R (3.0) BS03 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    679 7e2z:R (3.1) BS02 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    680 7e2z:R (3.1) BS03 CLR ? GO:0001586 ... P08908
    P0ABE7    		 33762731
    681 7ehl:A (-1.00) BS01 CLR ? GO:0005515 ... Q9NUT2 33872987
    682 7ehl:A (-1.00) BS03 CLR ? GO:0005515 ... Q9NUT2 33872987
    683 7ehl:A (-1.00) BS04 CLR ? GO:0005515 ... Q9NUT2 33872987
    684 7ehl:B (-1.00) BS01 CLR ? GO:0005515 ... Q9NUT2 33872987
    685 7ehl:B (-1.00) BS02 CLR ? GO:0005515 ... Q9NUT2 33872987
    686 7ehl:B (-1.00) BS03 CLR ? GO:0005515 ... Q9NUT2 33872987
    687 7ejx:R (2.4) BS02 CLR ? GO:0003774 ... Q9GZN0 35501348
    688 7ejx:R (2.4) BS03 CLR ? GO:0003774 ... Q9GZN0 35501348
    689 7eki:A (3.18) BS01 CLR ? GO:0004888 ... P36544 33958730
    690 7eki:B (3.18) BS01 CLR ? GO:0004888 ... P36544 33958730
    691 7eki:C (3.18) BS01 CLR ? GO:0004888 ... P36544 33958730
    692 7eki:D (3.18) BS01 CLR ? GO:0004888 ... P36544 33958730
    693 7eki:E (3.18) BS01 CLR ? GO:0004888 ... P36544 33958730
    694 7ekp:A (2.85) BS02 CLR ? GO:0004888 ... P36544 33958730
    695 7ekp:B (2.85) BS03 CLR ? GO:0004888 ... P36544 33958730
    696 7ekp:C (2.85) BS03 CLR ? GO:0004888 ... P36544 33958730
    697 7ekp:D (2.85) BS03 CLR ? GO:0004888 ... P36544 33958730
    698 7ekp:E (2.85) BS03 CLR ? GO:0004888 ... P36544 33958730
    699 7ekt:A (3.02) BS01 CLR ? GO:0004888 ... P36544 33958730
    700 7ekt:B (3.02) BS03 CLR ? GO:0004888 ... P36544 33958730
    701 7ekt:C (3.02) BS03 CLR ? GO:0004888 ... P36544 33958730
    702 7ekt:D (3.02) BS03 CLR ? GO:0004888 ... P36544 33958730
    703 7ekt:E (3.02) BS05 CLR ? GO:0004888 ... P36544 33958730
    704 7et1:B (2.6) BS01 CLR ? GO:0001671 ... P18434 34588453
    705 7evm:R (2.5) BS01 CLR ? GO:0004888 ... P43220 34145245
    706 7evm:R (2.5) BS02 CLR ? GO:0004888 ... P43220 34145245
    707 7evm:R (2.5) BS03 CLR ? GO:0004888 ... P43220 34145245
    708 7f16:R (2.8) BS01 CLR ? GO:0004888 ... P49190 34353904
    709 7f16:R (2.8) BS02 CLR ? GO:0004888 ... P49190 34353904
    710 7f61:A (2.6) BS02 CLR ? GO:0004930 ... Q9Y5N1 36243875
    711 7f6g:A (2.9) BS02 CLR N/A GO:0004930 ... N/A 37038975
    712 7f6g:A (2.9) BS03 CLR N/A GO:0004930 ... N/A 37038975
    713 7f6g:A (2.9) BS04 CLR N/A GO:0004930 ... N/A 37038975
    714 7f6g:A (2.9) BS05 CLR N/A GO:0004930 ... N/A 37038975
    715 7f6g:A (2.9) BS06 CLR N/A GO:0004930 ... N/A 37038975
    716 7f6g:A (2.9) BS07 CLR N/A GO:0004930 ... N/A 37038975
    717 7f6h:A (2.9) BS02 CLR ? GO:0002020 ... P30411 35132089
    718 7f6i:A (2.8) BS02 CLR ? GO:0002020 ... P30411 35132089
    719 7f6i:A (2.8) BS03 CLR ? GO:0002020 ... P30411 35132089
    720 7f6i:A (2.8) BS04 CLR ? GO:0002020 ... P30411 35132089
    721 7f6v:A (3.66) BS01 CLR ? GO:0003674 ... Q9BXJ8 35235791
    722 7f6v:B (3.66) BS01 CLR ? GO:0003674 ... Q9BXJ8 35235791
    723 7f9y:R (2.9) BS03 CLR ? GO:0001616 ... P0ABE7
    Q92847    		 34417468
    724 7f9y:R (2.9) BS04 CLR ? GO:0001616 ... P0ABE7
    Q92847    		 34417468
    725 7fd2:A (2.81) BS01 CLR 3.4.21.90 GO:0004252 ... Q5Y388 35149682
    726 7fd2:B (2.81) BS01 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    727 7fd2:B (2.81) BS02 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    728 7fd2:B (2.81) BS03 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    729 7fd2:F (2.81) BS01 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    730 7fd2:F (2.81) BS02 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    731 7fd2:F (2.81) BS03 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    732 7fd2:I (2.81) BS01 CLR 3.4.21.90 GO:0004252 ... Q5Y388 35149682
    733 7fd2:J (2.81) BS01 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    734 7fd2:J (2.81) BS02 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    735 7fd2:N (2.81) BS01 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    736 7fd2:N (2.81) BS02 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    737 7fd2:N (2.81) BS03 CLR 3.4.21.90 GO:0005198 ... Q5Y388 35149682
    738 7fdv:A (3.26) BS02 CLR 7.6.2.- GO:0000139 ... P45844 35081353
    739 7fdv:D (3.26) BS01 CLR 7.6.2.- GO:0000139 ... P45844 35081353
    740 7fee:A (2.7) BS01 CLR ? GO:0004930 ... P21554
    Q9V2J8    		 35637350
    741 7fin:R (3.1) BS01 CLR ? GO:0002029 ... P48546 35217653
    742 7fin:R (3.1) BS02 CLR ? GO:0002029 ... P48546 35217653
    743 7fin:R (3.1) BS03 CLR ? GO:0002029 ... P48546 35217653
    744 7fin:R (3.1) BS04 CLR ? GO:0002029 ... P48546 35217653
    745 7fiy:R (3.4) BS01 CLR ? GO:0002029 ... P48546 35217653
    746 7fjd:g (3.2) BS01 CLR ? GO:0004888 ... P09693 35271814
    747 7jv5:R (3.0) BS02 CLR ? GO:0001588 ... P21728 33571431
    748 7jv5:R (3.0) BS03 CLR ? GO:0001588 ... P21728 33571431
    749 7jv5:R (3.0) BS04 CLR ? GO:0001588 ... P21728 33571431
    750 7jv5:R (3.0) BS05 CLR ? GO:0001588 ... P21728 33571431
    751 7jvp:R (2.9) BS02 CLR ? GO:0001588 ... P21728 33571431
    752 7jvp:R (2.9) BS03 CLR ? GO:0001588 ... P21728 33571431
    753 7jvp:R (2.9) BS04 CLR ? GO:0001588 ... P21728 33571431
    754 7jvp:R (2.9) BS05 CLR ? GO:0001588 ... P21728 33571431
    755 7jvp:R (2.9) BS06 CLR ? GO:0001588 ... P21728 33571431
    756 7jvq:R (3.0) BS02 CLR ? GO:0001588 ... P21728 33571431
    757 7jvq:R (3.0) BS03 CLR ? GO:0001588 ... P21728 33571431
    758 7jvq:R (3.0) BS04 CLR ? GO:0001588 ... P21728 33571431
    759 7ky7:A (3.08) BS02 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    760 7ky7:A (3.08) BS03 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    761 7ky7:A (3.08) BS04 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    762 7ky7:A (3.08) BS05 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    763 7ky8:A (3.85) BS01 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    764 7ky8:A (3.85) BS02 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    765 7kya:A (3.5) BS01 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    766 7kya:A (3.5) BS04 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    767 7kya:A (3.5) BS05 CLR 7.6.2.1 GO:0000166 ... Q12675 33320091
    768 7lft:A (2.6) BS01 CLR ? GO:0005216 ... P29973 33651975
    769 7lft:A (2.6) BS02 CLR ? GO:0005216 ... P29973 33651975
    770 7lft:B (2.6) BS01 CLR ? GO:0005216 ... P29973 33651975
    771 7lft:B (2.6) BS02 CLR ? GO:0005216 ... P29973 33651975
    772 7lft:C (2.6) BS01 CLR ? GO:0005216 ... P29973 33651975
    773 7lft:C (2.6) BS02 CLR ? GO:0005216 ... P29973 33651975
    774 7lft:D (2.6) BS01 CLR ? GO:0005216 ... P29973 33651975
    775 7lft:D (2.6) BS02 CLR ? GO:0005216 ... P29973 33651975
    776 7lgu:A (2.3) BS01 CLR ? GO:0002931 ... P58743 34390643
    777 7lgu:B (2.3) BS01 CLR ? GO:0002931 ... P58743 34390643
    778 7lgw:A (2.7) BS01 CLR ? GO:0002931 ... P58743 34390643
    779 7lgw:B (2.7) BS01 CLR ? GO:0002931 ... P58743 34390643
    780 7lh2:A (3.43) BS01 CLR ? GO:0002931 ... P58743 34390643
    781 7lh2:B (3.43) BS01 CLR ? GO:0002931 ... P58743 34390643
    782 7li7:A (4.1) BS01 CLR ? GO:0016020 ... P31645 34851672
    783 7lia:A (3.3) BS06 CLR ? GO:0016020 ... P31645 34851672
    784 7ljc:R (3.0) BS03 CLR ? GO:0001588 ... P21728 33750903
    785 7ljc:R (3.0) BS04 CLR ? GO:0001588 ... P21728 33750903
    786 7ljc:R (3.0) BS05 CLR ? GO:0001588 ... P21728 33750903
    787 7ljd:R (3.2) BS03 CLR ? GO:0001588 ... P21728 33750903
    788 7ljd:R (3.2) BS04 CLR ? GO:0001588 ... P21728 33750903
    789 7ljd:R (3.2) BS05 CLR ? GO:0001588 ... P21728 33750903
    790 7lkp:A (3.27) BS01 CLR 7.6.2.1 GO:0001523 ... P78363 33605212
    791 7lkp:A (3.27) BS02 CLR 7.6.2.1 GO:0001523 ... P78363 33605212
    792 7lkp:A (3.27) BS04 CLR 7.6.2.1 GO:0001523 ... P78363 33605212
    793 7lkp:A (3.27) BS05 CLR 7.6.2.1 GO:0001523 ... P78363 33605212
    794 7m5x:A (2.7) BS04 CLR 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    795 7m5x:A (2.7) BS05 CLR 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    796 7m5x:A (2.7) BS07 CLR 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    797 7m5y:A (3.0) BS05 CLR 7.6.2.- GO:0000166 ... Q9NQ11 34715014
    798 7m95:A (2.41) BS02 CLR ? GO:0005634 ... Q3MHW7 34880501
    799 7mfi:A (2.81) BS01 CLR ? GO:0005634 ... Q3MHW7 34880501
    800 7mfi:B (2.81) BS01 CLR ? GO:0005634 ... Q3MHW7 34880501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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