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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5olz:A (1.9) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    202 5olz:A (1.9) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    203 5olz:A (1.9) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    204 5olz:A (1.9) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    205 5om1:A (2.1) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    206 5om1:A (2.1) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    207 5om1:A (2.1) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    208 5om1:A (2.1) BS05 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    209 5om4:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    210 5om4:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    211 5om4:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29311713
    212 5sy1:A (3.9) BS01 CLR ? GO:0005516 ... F1RAX4 27563101
    213 5sy1:B (3.9) BS01 CLR ? GO:0005516 ... F1RAX4 27563101
    214 5sy1:B (3.9) BS02 CLR ? GO:0005516 ... F1RAX4 27563101
    215 5tcx:A (2.955) BS01 CLR ? GO:0001618 ... P60033 27881302
    216 5tvn:A (2.9) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595    		 28129538
    217 5uph:A (3.0) BS01 CLR ? GO:0005044 ... Q14108 29199275
    218 5uph:B (3.0) BS02 CLR ? GO:0005044 ... Q14108 29199275
    219 5uvi:A (3.2) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28875031
    220 5uvi:A (3.2) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28875031
    221 5uvi:A (3.2) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 28875031
    222 5vra:A (2.35) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29300389
    223 5vra:A (2.35) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29300389
    224 5vra:A (2.35) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29300389
    225 5wb2:A (3.5) BS01 CLR ? GO:0004930 ... P69333 29882741
    226 5wvr:A (2.2) BS01 CLR ? GO:0008289 ... Q6CUK7 28319008
    227 5x7d:A (2.703) BS01 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 28813418
    228 5x7d:A (2.703) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... P00720
    P07550    		 28813418
    229 5x93:A (2.2) BS02 CLR 3.2.1.17 GO:0003796 ... P00720
    P24530    		 28805809
    230 5xr8:A (2.95) BS03 CLR ? GO:0004930 ... P00323
    P21554    		 28678776
    231 5xra:A (2.8) BS03 CLR ? GO:0004930 ... P00323
    P21554    		 28678776
    232 5zm5:A (2.6) BS01 CLR ? GO:0008289 ... Q9BXW6 30783101
    233 5zm7:A (3.401) BS01 CLR ? GO:0008289 ... Q9BXW6 30783101
    234 6a15:A (1.79) BS02 CLR 1.14.14.178 GO:0004497 ... O64989 31182839
    235 6a93:A (3.0) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    236 6a93:B (3.0) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    237 6a94:A (2.9) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    238 6a94:B (2.9) BS02 CLR ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    239 6aqf:A (2.51) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29290469
    240 6aqf:A (2.51) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29290469
    241 6aqf:A (2.51) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 29290469
    242 6b73:A (3.1) BS02 CLR ? GO:0004930 ... P0ABE7
    P41145    		 29307491
    243 6b73:B (3.1) BS02 CLR ? GO:0004930 ... P0ABE7
    P41145    		 29307491
    244 6bhu:A (3.14) BS05 CLR 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 29290467
    245 6bhu:A (3.14) BS06 CLR 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 29290467
    246 6bhu:A (3.14) BS07 CLR 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 29290467
    247 6co7:A (3.07) BS01 CLR ? GO:0005216 ... A7T1N0 29745897
    248 6co7:B (3.07) BS01 CLR ? GO:0005216 ... A7T1N0 29745897
    249 6co7:C (3.07) BS01 CLR ? GO:0005216 ... A7T1N0 29745897
    250 6co7:D (3.07) BS01 CLR ? GO:0005216 ... A7T1N0 29745897
    251 6d35:A (3.9) BS01 CLR ? GO:0004888 ... P0ABE7 29804838
    252 6drx:A (3.1) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595    		 30127358
    253 6dry:A (2.918) BS02 CLR ? GO:0004930 ... P0ABE7
    P41595    		 30127358
    254 6drz:A (3.102) BS01 CLR ? GO:0004930 ... P0ABE7
    P41595    		 30127358
    255 6ds0:A (3.188) BS01 CLR ? GO:0004930 ... P0ABE7
    P41595    		 30127358
    256 6f34:A (3.13) BS03 CLR ? GO:0003333 ... Q5L1G5 29416041
    257 6gt3:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 N/A
    258 6gt3:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 N/A
    259 6gt3:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 N/A
    260 6gyh:A (2.0) BS02 CLR ? GO:0005216 ... I0YUS5 30890657
    261 6hij:A (3.56) BS01 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    262 6hij:A (3.56) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    263 6hij:A (3.56) BS03 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    264 6hij:A (3.56) BS04 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    265 6hij:A (3.56) BS05 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    266 6hij:B (3.56) BS02 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    267 6hij:B (3.56) BS03 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    268 6hij:B (3.56) BS04 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    269 6hij:B (3.56) BS05 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    270 6hij:B (3.56) BS06 CLR 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    271 6ibb:C (2.12) BS01 CLR ? GO:0002001 ... Q6IYF9 31645725
    272 6idf:C (2.7) BS01 CLR ? GO:0000139 ... Q96BI3 30598546
    273 6idf:C (2.7) BS02 CLR ? GO:0000139 ... Q96BI3 30598546
    274 6idf:C (2.7) BS03 CLR ? GO:0000139 ... Q96BI3 30598546
    275 6iiu:A (2.5) BS03 CLR ? GO:0004930 ... P00268
    P0ABE7
    P21731    		 30510189
    276 6iiv:A (3.0) BS03 CLR ? GO:0004930 ... P00268
    P0ABE7
    P21731    		 30510189
    277 6iyc:C (2.6) BS01 CLR ? GO:0000139 ... Q96BI3 30630874
    278 6iyc:C (2.6) BS02 CLR ? GO:0000139 ... Q96BI3 30630874
    279 6iyc:C (2.6) BS03 CLR ? GO:0000139 ... Q96BI3 30630874
    280 6jmq:A (3.31) BS01 CLR ? GO:0002720 ... Q01650 31160781
    281 6jmq:A (3.31) BS02 CLR ? GO:0002720 ... Q01650 31160781
    282 6jmq:B (3.31) BS01 CLR ? GO:0001618 ... P08195 31160781
    283 6jxh:B (2.5) BS01 CLR ? GO:0001671 ... P18434 31436534
    284 6jxi:B (2.6) BS01 CLR ? GO:0001671 ... P18434 31436534
    285 6jxj:A (2.5) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 31436534
    286 6jxj:B (2.5) BS01 CLR ? GO:0001671 ... P18434 31436534
    287 6jxk:A (4.3) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 31436534
    288 6jxk:B (4.3) BS01 CLR ? GO:0001671 ... P18434 31436534
    289 6jxk:E (4.3) BS01 CLR 7.2.2.19 GO:0000166 ... P19156 31436534
    290 6jxk:F (4.3) BS01 CLR ? GO:0001671 ... P18434 31436534
    291 6jzh:A (2.25) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31798359
    292 6jzh:A (2.25) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31798359
    293 6jzh:A (2.25) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31798359
    294 6kuw:A (2.8) BS02 CLR ? GO:0004930 ... P18825
    Q9V2J8    		 N/A
    295 6kuw:B (2.8) BS02 CLR ? GO:0004930 ... P18825
    Q9V2J8    		 N/A
    296 6l47:A (3.5) BS02 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    297 6l47:A (3.5) BS03 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    298 6l47:B (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    299 6l47:B (3.5) BS03 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    300 6l48:A (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    301 6l48:B (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    302 6lfm:R (3.5) BS01 CLR ? GO:0002407 ... P25025 32610344
    303 6lfo:R (3.4) BS01 CLR ? GO:0002407 ... P25025 32610344
    304 6lpj:A (1.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    305 6lpj:A (1.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    306 6lpk:A (1.8) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    307 6lpk:A (1.8) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    308 6lpl:A (2.0) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    309 6lpl:A (2.0) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    310 6lpl:A (2.0) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 33168855
    311 6lqg:C (3.1) BS01 CLR ? GO:0000139 ... Q96BI3 33373587
    312 6lr4:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 33373587
    313 6lr4:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 33373587
    314 6lw5:A (2.8) BS02 CLR ? GO:0001540 ... P0ABE7
    P25090    		 32139677
    315 6lw5:A (2.8) BS03 CLR ? GO:0001540 ... P0ABE7
    P25090    		 32139677
    316 6m0f:A (3.3) BS01 CLR ? GO:0016020 ... Q7K4Y6 33850134
    317 6m2r:A (2.802) BS03 CLR ? GO:0016020 ... Q7K4Y6 33850134
    318 6m38:A (3.001) BS03 CLR ? GO:0016020 ... Q7K4Y6 33850134
    319 6m3z:A (3.11) BS03 CLR ? GO:0016020 ... Q7K4Y6 33850134
    320 6mg8:A (3.6) BS01 CLR ? GO:0008158 ... Q61115 30415841
    321 6mg8:A (3.6) BS02 CLR ? GO:0008158 ... Q61115 30415841
    322 6mg8:A (3.6) BS03 CLR ? GO:0008158 ... Q61115 30415841
    323 6mg8:A (3.6) BS04 CLR ? GO:0008158 ... Q61115 30415841
    324 6msm:A (3.2) BS06 CLR 5.6.1.6 GO:0005254 ... P13569 30459277
    325 6n4b:R (3.0) BS02 CLR ? GO:0004930 ... P21554 30639101
    326 6n7g:A (6.8) BS01 CLR ? GO:0000122 ... Q13635 31127104
    327 6n7g:A (6.8) BS02 CLR ? GO:0000122 ... Q13635 31127104
    328 6n7g:A (6.8) BS03 CLR ? GO:0000122 ... Q13635 31127104
    329 6n7g:B (6.8) BS01 CLR ? GO:0000122 ... Q13635 31127104
    330 6n7g:B (6.8) BS02 CLR ? GO:0000122 ... Q13635 31127104
    331 6n7g:D (6.8) BS01 CLR ? GO:0000122 ... Q13635 31127104
    332 6n7g:D (6.8) BS02 CLR ? GO:0000122 ... Q13635 31127104
    333 6n7g:D (6.8) BS03 CLR ? GO:0000122 ... Q13635 31127104
    334 6n7g:E (6.8) BS01 CLR ? GO:0000122 ... Q13635 31127104
    335 6n7g:E (6.8) BS02 CLR ? GO:0000122 ... Q13635 31127104
    336 6n7h:A (3.6) BS01 CLR ? GO:0000122 ... Q13635 31127104
    337 6n7h:A (3.6) BS02 CLR ? GO:0000122 ... Q13635 31127104
    338 6n7h:A (3.6) BS03 CLR ? GO:0000122 ... Q13635 31127104
    339 6n7h:B (3.6) BS01 CLR ? GO:0000122 ... Q13635 31127104
    340 6n7h:B (3.6) BS02 CLR ? GO:0000122 ... Q13635 31127104
    341 6n7k:A (6.5) BS01 CLR ? GO:0000122 ... Q13635 31127104
    342 6n7k:A (6.5) BS02 CLR ? GO:0000122 ... Q13635 31127104
    343 6n7k:A (6.5) BS03 CLR ? GO:0000122 ... Q13635 31127104
    344 6n7k:B (6.5) BS01 CLR ? GO:0000122 ... Q13635 31127104
    345 6n7k:B (6.5) BS02 CLR ? GO:0000122 ... Q13635 31127104
    346 6n7k:D (6.5) BS01 CLR ? GO:0000122 ... Q13635 31127104
    347 6n7k:D (6.5) BS02 CLR ? GO:0000122 ... Q13635 31127104
    348 6n7k:D (6.5) BS03 CLR ? GO:0000122 ... Q13635 31127104
    349 6n7k:E (6.5) BS01 CLR ? GO:0000122 ... Q13635 31127104
    350 6n7k:E (6.5) BS02 CLR ? GO:0000122 ... Q13635 31127104
    351 6nbf:R (3.0) BS01 CLR ? GO:0004888 ... Q03431 30975883
    352 6nbf:R (3.0) BS02 CLR ? GO:0004888 ... Q03431 30975883
    353 6nbf:R (3.0) BS03 CLR ? GO:0004888 ... Q03431 30975883
    354 6nbf:R (3.0) BS04 CLR ? GO:0004888 ... Q03431 30975883
    355 6nbf:R (3.0) BS05 CLR ? GO:0004888 ... Q03431 30975883
    356 6nbh:R (3.5) BS01 CLR ? GO:0004888 ... Q03431 30975883
    357 6nbh:R (3.5) BS02 CLR ? GO:0004888 ... Q03431 30975883
    358 6nbh:R (3.5) BS03 CLR ? GO:0004888 ... Q03431 30975883
    359 6nbh:R (3.5) BS04 CLR ? GO:0004888 ... Q03431 30975883
    360 6nbh:R (3.5) BS05 CLR ? GO:0004888 ... Q03431 30975883
    361 6nbi:R (4.0) BS01 CLR ? GO:0004888 ... Q03431 30975883
    362 6nf4:A (2.98) BS02 CLR N/A GO:0015252 ... N/A 31160780
    363 6nf4:B (2.98) BS02 CLR N/A GO:0015252 ... N/A 31160780
    364 6o3c:A (2.8) BS02 CLR ? GO:0004888 ... P56726 31263273
    365 6o3c:A (2.8) BS03 CLR ? GO:0004888 ... P56726 31263273
    366 6oba:A (3.1) BS01 CLR 3.2.1.17 GO:0003796 ... D9IEF7
    P07550    		 32483378
    367 6oba:A (3.1) BS02 CLR 3.2.1.17 GO:0003796 ... D9IEF7
    P07550    		 32483378
    368 6omm:R (3.17) BS02 CLR ? GO:0001540 ... P25090 32060286
    369 6omm:R (3.17) BS03 CLR ? GO:0001540 ... P25090 32060286
    370 6os1:A (2.794) BS02 CLR ? GO:0004930 ... P0ABE7
    P30556    		 32079768
    371 6os2:A (2.7) BS02 CLR ? GO:0004930 ... P0ABE7
    P30556    		 32079768
    372 6pb0:R (3.0) BS01 CLR ? GO:0004888 ... P34998 32004470
    373 6pb0:R (3.0) BS02 CLR ? GO:0004888 ... P34998 32004470
    374 6pb1:P (2.8) BS01 CLR ? GO:0004888 ... Q13324 32004470
    375 6pb1:P (2.8) BS02 CLR ? GO:0004888 ... Q13324 32004470
    376 6peq:F (2.97) BS01 CLR ? GO:0005886 ... Q6ZWS4 31806817
    377 6peq:H (2.97) BS01 CLR ? GO:0005886 ... Q6ZWS4 31806817
    378 6prz:A (2.8) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    379 6ps0:A (3.4) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    380 6ps1:A (3.2) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    381 6ps2:A (2.4) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    382 6ps3:A (2.5) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    383 6ps4:A (2.6) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    384 6ps5:A (2.9) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    385 6ps6:A (2.7) BS02 CLR ?
    3.2.1.17    		 GO:0003796 ... D9IEF7
    P07550    		 31709066
    386 6ps7:A (1.85) BS02 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31709066
    387 6ps7:A (1.85) BS03 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31709066
    388 6ps7:A (1.85) BS04 CLR ? GO:0001609 ... P0ABE7
    P29274    		 31709066
    389 6pt0:R (3.2) BS02 CLR ? GO:0001975 ... P34972 32004460
    390 6pt0:R (3.2) BS03 CLR ? GO:0001975 ... P34972 32004460
    391 6pt0:R (3.2) BS04 CLR ? GO:0001975 ... P34972 32004460
    392 6pt2:A (2.8) BS03 CLR ? GO:0004930 ... P41143 31807708
    393 6pt2:B (2.8) BS02 CLR ? GO:0004930 ... P41143 31807708
    394 6qee:A (3.9) BS03 CLR N/A GO:0005524 ... N/A 30765569
    395 6qee:A (3.9) BS04 CLR N/A GO:0005524 ... N/A 30765569
    396 6qee:A (3.9) BS05 CLR N/A GO:0005524 ... N/A 30765569
    397 6qee:A (3.9) BS06 CLR N/A GO:0005524 ... N/A 30765569
    398 6qex:A (3.6) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 30765569 BindingDB: IC50=8200nM
    399 6qex:A (3.6) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 30765569 BindingDB: IC50=8200nM
    400 6qex:A (3.6) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 30765569 BindingDB: IC50=8200nM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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