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BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2401 9brd:o (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2402 9brd:o (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2403 9brd:o (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    2404 9cia:m (3.39) BS03 CLR N/A N/A A0A075B6X2 N/A
    2405 9d3e:A (3.02) BS01 CLR N/A N/A N/A 39217154
    2406 9d3g:A (3.26) BS01 CLR N/A N/A N/A 39217154
    2407 9eo4:B (2.66) BS01 CLR N/A GO:0001504 ... Q01959 39112703
    2408 9eo4:B (2.66) BS03 CLR N/A GO:0001504 ... Q01959 39112703
    2409 9eo4:B (2.66) BS04 CLR N/A GO:0001504 ... Q01959 39112703
    2410 9euo:A (3.2) BS03 CLR N/A N/A Q7K4Y6 39010681
    2411 9eup:A (3.0) BS02 CLR N/A N/A Q7K4Y6 39010681
    2412 9f41:A (2.64) BS01 CLR ? N/A Q12200 N/A
    2413 9f41:B (2.64) BS01 CLR ? N/A Q12200 N/A
    2414 9f41:C (2.64) BS02 CLR ? N/A Q12200 N/A
    2415 9f41:D (2.64) BS03 CLR ? N/A Q12200 N/A
    2416 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    2417 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    2418 9ima:A (2.65) BS01 CLR N/A N/A Q9NZD1 39181182
    2419 9ima:A (2.65) BS02 CLR N/A N/A Q9NZD1 39181182
    2420 9ima:A (2.65) BS03 CLR N/A N/A Q9NZD1 39181182
    2421 9ima:B (2.65) BS01 CLR N/A N/A Q9NZD1 39181182
    2422 9ima:B (2.65) BS02 CLR N/A N/A Q9NZD1 39181182
    2423 9ima:B (2.65) BS03 CLR N/A N/A Q9NZD1 39181182
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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