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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2201 8v7z:A (3.4) BS05 CLR N/A GO:0005254 ... P13569 39107303
    2202 8v81:A (3.6) BS03 CLR N/A GO:0005254 ... P13569 39107303
    2203 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    2204 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    2205 8w2l:A (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2206 8w2l:B (2.45) BS02 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2207 8w2l:C (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2208 8w2l:C (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2209 8w2l:D (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2210 8w2l:D (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1    		 38615321
    2211 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    2212 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    2213 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    2214 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    2215 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    2216 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    2217 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    2218 8wa5:A (2.51) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 38072058
    2219 8we6:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    2220 8we6:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    2221 8we6:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    2222 8we6:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    2223 8we7:A (3.2) BS02 CLR ? GO:0002520 ... Q13936 37972591
    2224 8we7:A (3.2) BS03 CLR ? GO:0002520 ... Q13936 37972591
    2225 8we8:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    2226 8we8:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    2227 8we8:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    2228 8we8:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    2229 8we8:A (2.9) BS08 CLR ? GO:0002520 ... Q13936 37972591
    2230 8we8:B (2.9) BS01 CLR ? GO:0005246 ... P22947 37972591
    2231 8we9:A (3.0) BS02 CLR ? GO:0002520 ... Q13936 37972591
    2232 8we9:A (3.0) BS03 CLR ? GO:0002520 ... Q13936 37972591
    2233 8we9:A (3.0) BS04 CLR ? GO:0002520 ... Q13936 37972591
    2234 8woq:A (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2235 8woq:A (2.85) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    2236 8woq:A (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    2237 8woq:B (2.85) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2238 8woq:B (2.85) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    2239 8woq:B (2.85) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    2240 8woq:B (2.85) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    2241 8woq:B (2.85) BS08 CLR ? GO:0016020 ... Q9NXL6 38378654
    2242 8wor:A (2.66) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2243 8wor:A (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    2244 8wor:A (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    2245 8wor:A (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    2246 8wor:B (2.66) BS04 CLR ? GO:0016020 ... Q9NXL6 38378654
    2247 8wor:B (2.66) BS05 CLR ? GO:0016020 ... Q9NXL6 38378654
    2248 8wor:B (2.66) BS06 CLR ? GO:0016020 ... Q9NXL6 38378654
    2249 8wor:B (2.66) BS07 CLR ? GO:0016020 ... Q9NXL6 38378654
    2250 8wos:A (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    2251 8wos:A (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    2252 8wos:A (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2253 8wos:B (3.37) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    2254 8wos:B (3.37) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    2255 8wos:B (3.37) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2256 8wot:A (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    2257 8wot:A (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    2258 8wot:A (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2259 8wot:B (3.18) BS01 CLR ? GO:0016020 ... Q9NXL6 38378654
    2260 8wot:B (3.18) BS02 CLR ? GO:0016020 ... Q9NXL6 38378654
    2261 8wot:B (3.18) BS03 CLR ? GO:0016020 ... Q9NXL6 38378654
    2262 8wpu:B (3.1) BS04 CLR ? GO:0004930 ... P41180 37919470
    2263 8wxe:m (4.0) BS02 CLR ? N/A Q6PJ56 38657677
    2264 8wy0:b (3.8) BS02 CLR ? GO:0004888 ... P20963 38657677
    2265 8wy0:g (3.8) BS01 CLR ? GO:0004888 ... P09693 38657677
    2266 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    2267 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    2268 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    2269 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    2270 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    2271 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    2272 8x90:A (2.95) BS02 CLR ? GO:0001540 ... O00555 38443561
    2273 8x90:A (2.95) BS06 CLR ? GO:0001540 ... O00555 38443561
    2274 8x90:A (2.95) BS09 CLR ? GO:0001540 ... O00555 38443561
    2275 8x90:A (2.95) BS10 CLR ? GO:0001540 ... O00555 38443561
    2276 8x91:A (3.11) BS02 CLR ? GO:0001540 ... O00555 38443561
    2277 8x91:A (3.11) BS06 CLR ? GO:0001540 ... O00555 38443561
    2278 8x91:A (3.11) BS09 CLR ? GO:0001540 ... O00555 38443561
    2279 8x91:A (3.11) BS10 CLR ? GO:0001540 ... O00555 38443561
    2280 8x93:A (2.92) BS01 CLR ? GO:0001540 ... O00555 38443561
    2281 8x93:A (2.92) BS04 CLR ? GO:0001540 ... O00555 38443561
    2282 8x93:A (2.92) BS05 CLR ? GO:0001540 ... O00555 38443561
    2283 8x93:A (2.92) BS08 CLR ? GO:0001540 ... O00555 38443561
    2284 8x93:A (2.92) BS09 CLR ? GO:0001540 ... O00555 38443561
    2285 8x94:C (2.55) BS02 CLR N/A N/A Q8NER1 39107321
    2286 8xbs:A (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    2287 8xbs:A (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    2288 8xbs:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    2289 8xbs:B (2.21) BS02 CLR ? GO:0003723 ... Q9GZC8 38742627
    2290 8xbs:B (2.21) BS03 CLR ? GO:0003723 ... Q9GZC8 38742627
    2291 8xbs:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    2292 8xc1:A (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    2293 8xc1:A (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    2294 8xc1:A (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    2295 8xc1:B (2.21) BS04 CLR ? GO:0003723 ... Q9GZC8 38742627
    2296 8xc1:B (2.21) BS05 CLR ? GO:0003723 ... Q9GZC8 38742627
    2297 8xc1:B (2.21) BS06 CLR ? GO:0003723 ... Q9GZC8 38742627
    2298 8xgm:A (3.29) BS01 CLR N/A N/A P46091 N/A
    2299 8xmm:A (2.89) BS01 CLR ? GO:0001518 ... Q15858 38381792
    2300 8xor:R (3.0) BS01 CLR N/A N/A P25116 38997424
    2301 8xor:R (3.0) BS02 CLR N/A N/A P25116 38997424
    2302 8xor:R (3.0) BS03 CLR N/A N/A P25116 38997424
    2303 8xor:R (3.0) BS04 CLR N/A N/A P25116 38997424
    2304 8xor:R (3.0) BS05 CLR N/A N/A P25116 38997424
    2305 8xor:R (3.0) BS06 CLR N/A N/A P25116 38997424
    2306 8xos:R (3.2) BS01 CLR N/A N/A P25116 38997424
    2307 8xos:R (3.2) BS02 CLR N/A N/A P25116 38997424
    2308 8xql:R (2.99) BS03 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2309 8xqn:R (3.05) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2310 8xqo:R (2.77) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2311 8xqp:R (3.29) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2312 8xqs:R (3.3) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2313 8xqt:R (2.94) BS01 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2314 8xqt:R (2.94) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2315 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2316 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2317 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2318 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2319 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2320 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2321 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    2322 8yc0:m (4.12) BS02 CLR ? GO:0002250 ... A0JD36
    B7Z8K6    		 38657677
    2323 8yky:R (2.99) BS02 CLR N/A GO:0001580 ... Q59310
    Q9NYV8    		 38776963
    2324 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    2325 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    2326 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    2327 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    2328 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    2329 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    2330 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    2331 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    2332 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    2333 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    2334 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    2335 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    2336 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    2337 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    2338 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    2339 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    2340 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    2341 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    2342 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    2343 8zle:A (3.35) BS01 CLR N/A N/A N/A 39033175
    2344 8zle:B (3.35) BS02 CLR N/A N/A N/A 39033175
    2345 9axf:Q (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    2346 9axf:Q (3.5) BS08 CLR ? GO:0004930 ... P41180 38632411
    2347 9axf:R (3.5) BS07 CLR ? GO:0004930 ... P41180 38632411
    2348 9b36:A (4.29) BS04 CLR ? N/A P42260 38778115
    2349 9b36:A (4.29) BS05 CLR ? N/A P42260 38778115
    2350 9b36:C (4.29) BS03 CLR ? N/A P42260 38778115
    2351 9b36:C (4.29) BS06 CLR ? N/A P42260 38778115
    2352 9b37:A (6.66) BS03 CLR ? N/A P42260 38778115
    2353 9b37:A (6.66) BS04 CLR ? N/A P42260 38778115
    2354 9b37:C (6.66) BS02 CLR ? N/A P42260 38778115
    2355 9b37:C (6.66) BS05 CLR ? N/A P42260 38778115
    2356 9b37:D (6.66) BS02 CLR ? N/A P42260 38778115
    2357 9b8o:h (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2358 9b8o:i (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2359 9b8o:i (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2360 9b8o:i (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2361 9b8o:j (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2362 9b8o:j (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2363 9b8o:j (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2364 9b8o:j (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    2365 9b8o:k (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2366 9b8o:k (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2367 9b8o:k (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2368 9b8o:l (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2369 9b8o:l (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2370 9b8o:l (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2371 9b8o:m (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2372 9b8o:m (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2373 9b8o:m (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2374 9b8o:n (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2375 9b8o:n (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2376 9b8o:n (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2377 9b8o:n (3.2) BS04 CLR N/A GO:0000220 ... P63081 38900912
    2378 9b8o:n (3.2) BS05 CLR N/A GO:0000220 ... P63081 38900912
    2379 9b8o:o (3.2) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2380 9b8o:o (3.2) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2381 9b8o:o (3.2) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2382 9brd:h (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2383 9brd:i (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2384 9brd:i (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2385 9brd:i (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2386 9brd:j (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2387 9brd:j (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2388 9brd:k (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2389 9brd:k (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2390 9brd:l (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2391 9brd:l (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2392 9brd:l (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2393 9brd:m (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2394 9brd:m (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2395 9brd:m (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2396 9brd:n (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    2397 9brd:n (3.5) BS02 CLR N/A GO:0000220 ... P63081 38900912
    2398 9brd:n (3.5) BS03 CLR N/A GO:0000220 ... P63081 38900912
    2399 9brd:n (3.5) BS04 CLR N/A GO:0000220 ... P63081 38900912
    2400 9brd:o (3.5) BS01 CLR N/A GO:0000220 ... P63081 38900912
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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