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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 8srd:D (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2002 8sre:A (2.52) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2003 8sre:A (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2004 8sre:A (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2005 8sre:A (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2006 8sre:B (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2007 8sre:B (2.52) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2008 8sre:B (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2009 8sre:B (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2010 8sre:C (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2011 8sre:C (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2012 8sre:C (2.52) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2013 8sre:C (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2014 8sre:D (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2015 8sre:D (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2016 8sre:D (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2017 8sre:D (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2018 8srf:A (2.52) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2019 8srf:A (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2020 8srf:A (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2021 8srf:A (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    2022 8srf:B (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2023 8srf:B (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2024 8srf:B (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2025 8srf:B (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    2026 8srf:C (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2027 8srf:C (2.52) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2028 8srf:C (2.52) BS10 CLR ? GO:0005216 ... F2UB89 N/A
    2029 8srf:C (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    2030 8srf:D (2.52) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2031 8srf:D (2.52) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2032 8srf:D (2.52) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2033 8srf:D (2.52) BS11 CLR ? GO:0005216 ... F2UB89 N/A
    2034 8srg:A (3.03) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2035 8srg:A (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2036 8srg:A (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2037 8srg:A (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2038 8srg:B (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2039 8srg:B (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2040 8srg:B (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2041 8srg:B (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2042 8srg:C (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2043 8srg:C (3.03) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2044 8srg:C (3.03) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2045 8srg:C (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2046 8srg:D (3.03) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2047 8srg:D (3.03) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2048 8srg:D (3.03) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2049 8srg:D (3.03) BS09 CLR ? GO:0005216 ... F2UB89 N/A
    2050 8srh:A (3.79) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    2051 8srh:A (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2052 8srh:A (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2053 8srh:B (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2054 8srh:B (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2055 8srh:B (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2056 8srh:C (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2057 8srh:C (3.79) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2058 8srh:C (3.79) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2059 8srh:D (3.79) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2060 8srh:D (3.79) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2061 8srh:D (3.79) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2062 8sri:A (2.73) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2063 8sri:A (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2064 8sri:A (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2065 8sri:B (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2066 8sri:B (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2067 8sri:B (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2068 8sri:C (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2069 8sri:C (2.73) BS07 CLR ? GO:0005216 ... F2UB89 N/A
    2070 8sri:C (2.73) BS08 CLR ? GO:0005216 ... F2UB89 N/A
    2071 8sri:D (2.73) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2072 8sri:D (2.73) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2073 8sri:D (2.73) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2074 8srj:A (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2075 8srj:A (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2076 8srj:A (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2077 8srj:B (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2078 8srj:B (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2079 8srj:B (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2080 8srj:C (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2081 8srj:C (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2082 8srj:C (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2083 8srj:D (3.74) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2084 8srj:D (3.74) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2085 8srj:D (3.74) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2086 8srk:A (4.14) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2087 8srk:A (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    2088 8srk:A (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2089 8srk:A (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2090 8srk:B (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2091 8srk:B (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    2092 8srk:B (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2093 8srk:B (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2094 8srk:C (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2095 8srk:C (4.14) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    2096 8srk:C (4.14) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    2097 8srk:C (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2098 8srk:D (4.14) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2099 8srk:D (4.14) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    2100 8srk:D (4.14) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    2101 8srk:D (4.14) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    2102 8ss2:A (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2103 8ss2:C (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2104 8ss3:A (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2105 8ss3:A (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2106 8ss3:C (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2107 8ss3:C (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2108 8ss6:A (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2109 8ss6:A (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2110 8ss6:B (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2111 8ss6:C (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2112 8ss6:C (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2113 8ss6:D (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2114 8ss7:A (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2115 8ss7:A (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2116 8ss7:A (2.76) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2117 8ss7:B (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2118 8ss7:C (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2119 8ss7:C (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2120 8ss7:D (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2121 8ss8:C (2.81) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2122 8ss9:A (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2123 8ss9:C (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    2124 8sza:A (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2125 8sza:B (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2126 8sza:C (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2127 8sza:D (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2128 8sza:E (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2129 8sza:F (2.75) BS01 CLR ? GO:0001525 ... Q92982 N/A
    2130 8szg:B (3.6) BS01 CLR ? GO:0004930 ... P41180 38326620
    2131 8szi:B (3.5) BS01 CLR ? GO:0004930 ... P41180 38326620
    2132 8t03:A (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    2133 8t03:B (2.72) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    2134 8t04:A (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    2135 8t04:B (2.98) BS02 CLR ? GO:0000139 ... Q9D1N4 37770716
    2136 8t05:A (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    2137 8t05:B (3.22) BS02 CLR N/A GO:0016020 ... N/A 37770716
    2138 8t3s:R (3.07) BS02 CLR ? GO:0004930 ... O15552 38198545
    2139 8t56:A (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    2140 8t56:A (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    2141 8t56:B (2.8) BS04 CLR ? GO:0005227 ... Q5XEZ5 38103547
    2142 8t56:B (2.8) BS05 CLR ? GO:0005227 ... Q5XEZ5 38103547
    2143 8t56:D (2.8) BS01 CLR N/A N/A N/A 38103547
    2144 8t56:D (2.8) BS02 CLR N/A N/A N/A 38103547
    2145 8t56:E (2.8) BS03 CLR N/A N/A N/A 38103547
    2146 8t56:H (2.8) BS01 CLR N/A N/A N/A 38103547
    2147 8t56:H (2.8) BS02 CLR N/A N/A N/A 38103547
    2148 8t56:I (2.8) BS03 CLR N/A N/A N/A 38103547
    2149 8t57:A (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    2150 8t57:A (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    2151 8t57:B (2.7) BS01 CLR ? GO:0005227 ... Q8GUH7 38103547
    2152 8t57:B (2.7) BS02 CLR ? GO:0005227 ... Q8GUH7 38103547
    2153 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    2154 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    2155 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    2156 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    2157 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    2158 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    2159 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    2160 8u2z:A (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    2161 8u2z:A (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    2162 8u2z:B (3.6) BS01 CLR ? GO:0005216 ... O35433 38698206
    2163 8u2z:B (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    2164 8u2z:C (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    2165 8u2z:C (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    2166 8u2z:D (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    2167 8u2z:D (3.6) BS04 CLR ? GO:0005216 ... O35433 38698206
    2168 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2169 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2170 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2171 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2172 8u4r:R (3.1) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2173 8u4s:C (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2174 8u4s:C (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2175 8u4s:G (3.35) BS02 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2176 8u4s:G (3.35) BS04 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2177 8u4s:R (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2178 8u4s:R (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    2179 8u4t:AA (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    2180 8u4t:AA (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    2181 8u4t:I (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    2182 8u4t:I (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    2183 8u4t:Q (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    2184 8u4t:Q (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    2185 8u4t:R (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    2186 8u4t:R (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    2187 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    2188 8ugy:R (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    2189 8ugy:R (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    2190 8uh3:D (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    2191 8uh3:D (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    2192 8uh3:D (3.31) BS03 CLR ? GO:0001586 ... P28566 38630816
    2193 8uuk:C (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    2194 8uuk:C (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    2195 8uuk:C (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    2196 8uuk:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    2197 8uuk:D (2.5) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    2198 8uuk:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    2199 8uuk:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    2200 8uuk:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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