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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2423 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 8sgw:C (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1802 8sgw:D (2.5) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    1803 8sgw:D (2.5) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    1804 8sgw:D (2.5) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1805 8sgw:D (2.5) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    1806 8sh3:C (2.8) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    1807 8sh3:C (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1808 8sh3:C (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    1809 8sh3:C (2.8) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    1810 8sh3:D (2.8) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1811 8sh3:D (2.8) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    1812 8sh3:D (2.8) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    1813 8sh3:D (2.8) BS08 CLR ? GO:0005886 ... I3L8V6 38184688
    1814 8shc:C (3.0) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    1815 8shc:C (3.0) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    1816 8shc:C (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1817 8shc:D (3.0) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1818 8shc:D (3.0) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    1819 8shc:D (3.0) BS07 CLR ? GO:0005886 ... I3L8V6 38184688
    1820 8si2:A (2.19) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1821 8si2:A (2.19) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1822 8si2:B (2.19) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1823 8si2:B (2.19) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1824 8si2:C (2.19) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1825 8si2:C (2.19) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1826 8si2:D (2.19) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1827 8si2:D (2.19) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1828 8si3:A (2.61) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1829 8si3:A (2.61) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1830 8si3:B (2.61) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1831 8si3:B (2.61) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1832 8si3:C (2.61) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1833 8si3:C (2.61) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1834 8si3:D (2.61) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1835 8si3:D (2.61) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1836 8si4:A (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1837 8si4:A (2.46) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1838 8si4:B (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1839 8si4:B (2.46) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1840 8si4:C (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1841 8si4:C (2.46) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1842 8si4:D (2.46) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1843 8si4:D (2.46) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1844 8si5:A (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1845 8si5:A (2.17) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1846 8si5:B (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1847 8si5:B (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1848 8si5:C (2.17) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1849 8si5:C (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1850 8si5:D (2.17) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1851 8si5:D (2.17) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1852 8si6:A (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1853 8si6:B (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1854 8si6:C (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1855 8si6:C (2.44) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1856 8si6:D (2.44) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1857 8si7:A (2.59) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1858 8si7:A (2.59) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1859 8si7:B (2.59) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1860 8si7:B (2.59) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1861 8si7:C (2.59) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1862 8si7:C (2.59) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1863 8si7:D (2.59) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1864 8si7:D (2.59) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1865 8si8:A (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1866 8si8:A (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1867 8si8:B (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1868 8si8:B (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1869 8si8:C (2.99) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1870 8si8:C (2.99) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1871 8si8:D (2.99) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1872 8si8:D (2.99) BS05 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1873 8sia:A (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1874 8sia:B (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1875 8sia:B (2.91) BS03 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1876 8sia:C (2.91) BS01 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1877 8sia:C (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1878 8sia:D (2.91) BS02 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1879 8sia:D (2.91) BS04 CLR 2.7.11.1 GO:0005216 ... Q923J1 37156763
    1880 8sie:C (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    1881 8sie:C (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    1882 8sie:C (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    1883 8sie:C (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1884 8sie:C (2.7) BS06 CLR ? GO:0005886 ... I3L8V6 38184688
    1885 8sie:D (2.7) BS01 CLR ? GO:0005886 ... I3L8V6 38184688
    1886 8sie:D (2.7) BS02 CLR ? GO:0005886 ... I3L8V6 38184688
    1887 8sie:D (2.7) BS03 CLR ? GO:0005886 ... I3L8V6 38184688
    1888 8sie:D (2.7) BS04 CLR ? GO:0005886 ... I3L8V6 38184688
    1889 8sie:D (2.7) BS05 CLR ? GO:0005886 ... I3L8V6 38184688
    1890 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 N/A
    1891 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    1892 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    1893 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    1894 8sr7:A (1.97) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1895 8sr7:A (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    1896 8sr7:A (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    1897 8sr7:A (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1898 8sr7:B (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1899 8sr7:B (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    1900 8sr7:B (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    1901 8sr7:B (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1902 8sr7:C (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1903 8sr7:C (1.97) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    1904 8sr7:C (1.97) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    1905 8sr7:C (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1906 8sr7:D (1.97) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1907 8sr7:D (1.97) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1908 8sr7:D (1.97) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1909 8sr7:D (1.97) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1910 8sr8:A (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1911 8sr8:A (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1912 8sr8:A (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1913 8sr8:A (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1914 8sr8:B (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1915 8sr8:B (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1916 8sr8:B (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1917 8sr8:B (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1918 8sr8:C (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1919 8sr8:C (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1920 8sr8:C (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1921 8sr8:C (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1922 8sr8:D (2.77) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1923 8sr8:D (2.77) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1924 8sr8:D (2.77) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1925 8sr8:D (2.77) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1926 8sr9:A (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1927 8sr9:A (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1928 8sr9:A (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1929 8sr9:A (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1930 8sr9:B (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1931 8sr9:B (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1932 8sr9:B (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1933 8sr9:B (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1934 8sr9:C (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1935 8sr9:C (3.05) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1936 8sr9:C (3.05) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1937 8sr9:C (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1938 8sr9:D (3.05) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1939 8sr9:D (3.05) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1940 8sr9:D (3.05) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1941 8sr9:D (3.05) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1942 8sra:A (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1943 8sra:A (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1944 8sra:A (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1945 8sra:A (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1946 8sra:B (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1947 8sra:B (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1948 8sra:B (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1949 8sra:B (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1950 8sra:C (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1951 8sra:C (2.93) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1952 8sra:C (2.93) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1953 8sra:C (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1954 8sra:D (2.93) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1955 8sra:D (2.93) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1956 8sra:D (2.93) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1957 8sra:D (2.93) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1958 8srb:A (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1959 8srb:A (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1960 8srb:A (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1961 8srb:A (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1962 8srb:B (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1963 8srb:B (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1964 8srb:B (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1965 8srb:B (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1966 8srb:C (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1967 8srb:C (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1968 8srb:C (2.82) BS04 CLR ? GO:0005216 ... F2UB89 38773335
    1969 8srb:C (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1970 8srb:D (2.82) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1971 8srb:D (2.82) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1972 8srb:D (2.82) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1973 8srb:D (2.82) BS05 CLR ? GO:0005216 ... F2UB89 38773335
    1974 8src:A (2.92) BS06 CLR ? GO:0005216 ... F2UB89 38773335
    1975 8src:A (2.92) BS08 CLR ? GO:0005216 ... F2UB89 38773335
    1976 8src:A (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1977 8src:A (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    1978 8src:B (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1979 8src:B (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    1980 8src:B (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1981 8src:B (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    1982 8src:C (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1983 8src:C (2.92) BS07 CLR ? GO:0005216 ... F2UB89 38773335
    1984 8src:C (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1985 8src:C (2.92) BS10 CLR ? GO:0005216 ... F2UB89 38773335
    1986 8src:D (2.92) BS01 CLR ? GO:0005216 ... F2UB89 38773335
    1987 8src:D (2.92) BS02 CLR ? GO:0005216 ... F2UB89 38773335
    1988 8src:D (2.92) BS03 CLR ? GO:0005216 ... F2UB89 38773335
    1989 8src:D (2.92) BS09 CLR ? GO:0005216 ... F2UB89 38773335
    1990 8srd:A (2.91) BS03 CLR ? GO:0005216 ... F2UB89 N/A
    1991 8srd:A (2.91) BS05 CLR ? GO:0005216 ... F2UB89 N/A
    1992 8srd:A (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    1993 8srd:B (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    1994 8srd:B (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    1995 8srd:B (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    1996 8srd:C (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    1997 8srd:C (2.91) BS04 CLR ? GO:0005216 ... F2UB89 N/A
    1998 8srd:C (2.91) BS06 CLR ? GO:0005216 ... F2UB89 N/A
    1999 8srd:D (2.91) BS01 CLR ? GO:0005216 ... F2UB89 N/A
    2000 8srd:D (2.91) BS02 CLR ? GO:0005216 ... F2UB89 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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