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BioLiP
Download all results in tab-seperated text for 82 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1cla:A (2.34) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 2109633
    2 1qhs:A (2.8) BS02 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    3 1qhs:A (2.8) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    4 1qhy:A (2.6) BS03 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    5 1qhy:A (2.6) BS04 CLM 2.7.1.- GO:0005524 ... Q56148 10835366
    6 1usq:A (1.9) BS01 CLM ? N/A P24093 15331605
    7 1usq:B (1.9) BS01 CLM ? N/A P24093 15331605
    8 1usq:C (1.9) BS01 CLM ? N/A P24093 15331605
    9 1usq:D (1.9) BS01 CLM ? N/A P24093 15331605
    10 1usq:E (1.9) BS01 CLM ? N/A P24093 15331605
    11 1usq:F (1.9) BS01 CLM ? N/A P24093 15331605
    12 2jkj:A (2.3) BS01 CLM ? N/A P24093 19465765
    13 2jkj:B (2.3) BS01 CLM ? N/A P24093 19465765
    14 2jkj:C (2.3) BS02 CLM ? N/A P24093 19465765
    15 2jkj:D (2.3) BS01 CLM ? N/A P24093 19465765
    16 2jkj:E (2.3) BS01 CLM ? N/A P24093 19465765
    17 2jkj:F (2.3) BS02 CLM ? N/A P24093 19465765
    18 2jkl:A (1.9) BS02 CLM ? N/A P24093 19465765
    19 2jkl:B (1.9) BS03 CLM ? N/A P24093 19465765
    20 2jkl:C (1.9) BS03 CLM ? N/A P24093 19465765
    21 2jkl:D (1.9) BS03 CLM ? N/A P24093 19465765
    22 2jkl:E (1.9) BS02 CLM ? N/A P24093 19465765
    23 2jkl:F (1.9) BS03 CLM ? N/A P24093 19465765
    24 2uxp:A (2.7) BS01 CLM ? GO:0000976 ... Q9AIU0 17466326
    25 2uxp:B (2.7) BS01 CLM ? GO:0000976 ... Q9AIU0 17466326
    26 2xat:A (3.2) BS01 CLM 2.3.1.28 GO:0008811 ... P26841 9578552
    27 3cla:A (1.75) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 2187098 MOAD: Kd=13uM
    28 3u9f:A (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    29 3u9f:A (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    30 3u9f:B (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    31 3u9f:B (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    32 3u9f:C (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    33 3u9f:D (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    34 3u9f:D (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    35 3u9f:E (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    36 3u9f:E (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    37 3u9f:F (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    38 3u9f:F (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    39 3u9f:G (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    40 3u9f:G (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    41 3u9f:H (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    42 3u9f:H (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    43 3u9f:I (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    44 3u9f:I (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    45 3u9f:J (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    46 3u9f:K (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    47 3u9f:L (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    48 3u9f:L (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    49 3u9f:M (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    50 3u9f:M (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    51 3u9f:N (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    52 3u9f:N (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    53 3u9f:O (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    54 3u9f:O (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    55 3u9f:P (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    56 3u9f:P (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    57 3u9f:R (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    58 3u9f:S (2.9) BS01 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    59 3u9f:S (2.9) BS02 CLM 2.3.1.28 GO:0008811 ... P62577 22294317
    60 4cla:A (2.0) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 2015231
    61 4oad:A (1.45) BS01 CLM ? GO:0016747 ... Q9HV14 N/A
    62 4oad:A (1.45) BS02 CLM ? GO:0016747 ... Q9HV14 N/A
    63 4oae:A (1.25) BS01 CLM ? GO:0016747 ... Q9HV14 N/A
    64 4oae:A (1.25) BS02 CLM ? GO:0016747 ... Q9HV14 N/A
    65 4zow:A (2.45) BS01 CLM ? GO:0005886 ... P0AEY8 26238402 MOAD: Kd=75uM
    PDBbind: -logKd/Ki=4.12, Kd=75uM
    66 6iey:A (2.097) BS01 CLM 3.1.1.1 GO:0016787 ... G3CR02 30645605
    67 6vrz:A (2.0) BS01 CLM ? GO:0005886 ... P0AEY8 32127561
    68 6vs0:A (2.1) BS01 CLM ? GO:0005886 ... P0AEY8 32127561
    69 6x7q:A (1.68) BS03 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    70 6x7q:A (1.68) BS04 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    71 6x7q:B (1.68) BS02 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    72 6x7q:B (1.68) BS04 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    73 6x7q:C (1.68) BS01 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    74 6x7q:C (1.68) BS03 CLM 2.3.1.28 GO:0008811 ... P00484 N/A
    75 7tjc:A (1.35) BS01 CLM N/A N/A N/A 36153664
    76 7tjc:B (1.35) BS01 CLM N/A N/A N/A 36153664
    77 7wx6:A (2.273) BS03 CLM ? GO:0016747 ... Q5C8M4 36048151
    78 8gk4:C (3.12) BS01 CLM ? GO:0005886 ... A0A1C9A1J1 37289051
    79 8j40:A (1.57) BS01 CLM 2.3.1.28 GO:0016740 ... Q6Q627 38311919
    80 8j40:A (1.57) BS02 CLM 2.3.1.28 GO:0016740 ... Q6Q627 38311919
    81 8j40:A (1.57) BS03 CLM 2.3.1.28 GO:0016740 ... Q6Q627 38311919
    82 8j40:A (1.57) BS04 CLM 2.3.1.28 GO:0016740 ... Q6Q627 38311919
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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