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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    18201 6nwa:r (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18202 6nwa:r (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18203 6nwa:r (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18204 6nwa:r (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18205 6nwa:r (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18206 6nwa:r (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18207 6nwa:r (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18208 6nwa:r (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18209 6nwa:r (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18210 6nwa:r (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18211 6nwa:r (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18212 6nwa:r (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18213 6nwa:r (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18214 6nwa:r (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18215 6nwa:r (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18216 6nwa:r (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18217 6nwa:r (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18218 6nwa:r (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18219 6nwa:s (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18220 6nwa:s (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18221 6nwa:s (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18222 6nwa:s (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18223 6nwa:s (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18224 6nwa:s (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18225 6nwa:s (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18226 6nwa:s (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18227 6nwa:s (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18228 6nwa:s (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18229 6nwa:s (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18230 6nwa:s (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18231 6nwa:s (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18232 6nwa:s (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18233 6nwa:s (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18234 6nwa:s (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18235 6nwa:s (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18236 6nwa:s (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18237 6nwa:s (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18238 6nwa:s (3.48) BS20 CLA ? GO:0005886 ... Q55274 31133699
    18239 6nwa:t (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18240 6nwa:t (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18241 6nwa:t (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18242 6nwa:t (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18243 6nwa:t (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18244 6nwa:t (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18245 6nwa:t (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18246 6nwa:t (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18247 6nwa:t (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18248 6nwa:t (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18249 6nwa:t (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18250 6nwa:t (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18251 6nwa:t (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18252 6nwa:t (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18253 6nwa:t (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18254 6nwa:t (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18255 6nwa:t (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18256 6nwa:t (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18257 6nwa:u (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18258 6nwa:u (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18259 6nwa:u (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18260 6nwa:u (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18261 6nwa:u (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18262 6nwa:u (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18263 6nwa:u (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18264 6nwa:u (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18265 6nwa:u (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18266 6nwa:u (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18267 6nwa:u (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18268 6nwa:u (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18269 6nwa:u (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18270 6nwa:u (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18271 6nwa:u (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18272 6nwa:u (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18273 6nwa:u (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18274 6nwa:u (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18275 6nwa:u (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18276 6nwa:v (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18277 6nwa:v (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18278 6nwa:v (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18279 6nwa:v (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18280 6nwa:v (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18281 6nwa:v (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18282 6nwa:v (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18283 6nwa:v (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18284 6nwa:v (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18285 6nwa:v (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18286 6nwa:v (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18287 6nwa:v (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18288 6nwa:v (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18289 6nwa:v (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18290 6nwa:v (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18291 6nwa:v (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18292 6nwa:v (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18293 6nwa:v (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18294 6nwa:v (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18295 6nwa:w (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18296 6nwa:w (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18297 6nwa:w (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18298 6nwa:w (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18299 6nwa:w (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18300 6nwa:w (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18301 6nwa:w (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18302 6nwa:w (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18303 6nwa:w (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18304 6nwa:w (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18305 6nwa:w (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18306 6nwa:w (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18307 6nwa:w (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18308 6nwa:w (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18309 6nwa:w (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18310 6nwa:w (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18311 6nwa:w (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18312 6nwa:w (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18313 6nwa:w (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18314 6nwa:w (3.48) BS20 CLA ? GO:0005886 ... Q55274 31133699
    18315 6nwa:x (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18316 6nwa:x (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18317 6nwa:x (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18318 6nwa:x (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18319 6nwa:x (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18320 6nwa:x (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18321 6nwa:x (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18322 6nwa:x (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18323 6nwa:x (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18324 6nwa:x (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18325 6nwa:x (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18326 6nwa:x (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18327 6nwa:x (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18328 6nwa:x (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18329 6nwa:x (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18330 6nwa:x (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18331 6nwa:x (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18332 6nwa:x (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18333 6nwa:x (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18334 6nwa:y (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    18335 6nwa:y (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    18336 6nwa:y (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    18337 6nwa:y (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    18338 6nwa:y (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    18339 6nwa:y (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    18340 6nwa:y (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    18341 6nwa:y (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    18342 6nwa:y (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    18343 6nwa:y (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    18344 6nwa:y (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    18345 6nwa:y (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    18346 6nwa:y (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    18347 6nwa:y (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    18348 6nwa:y (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    18349 6nwa:y (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    18350 6nwa:y (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    18351 6nwa:y (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    18352 6nwa:y (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    18353 6pfy:A (2.9) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18354 6pfy:A (2.9) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18355 6pfy:A (2.9) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18356 6pfy:A (2.9) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18357 6pfy:A (2.9) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18358 6pfy:A (2.9) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18359 6pfy:A (2.9) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18360 6pfy:A (2.9) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18361 6pfy:A (2.9) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18362 6pfy:A (2.9) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18363 6pfy:A (2.9) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18364 6pfy:A (2.9) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18365 6pfy:A (2.9) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18366 6pfy:A (2.9) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18367 6pfy:A (2.9) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18368 6pfy:A (2.9) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18369 6pfy:A (2.9) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18370 6pfy:A (2.9) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18371 6pfy:A (2.9) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18372 6pfy:A (2.9) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18373 6pfy:A (2.9) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18374 6pfy:A (2.9) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18375 6pfy:A (2.9) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18376 6pfy:A (2.9) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18377 6pfy:A (2.9) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18378 6pfy:A (2.9) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18379 6pfy:A (2.9) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18380 6pfy:A (2.9) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18381 6pfy:A (2.9) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18382 6pfy:A (2.9) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18383 6pfy:A (2.9) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18384 6pfy:A (2.9) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18385 6pfy:A (2.9) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18386 6pfy:A (2.9) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18387 6pfy:A (2.9) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18388 6pfy:A (2.9) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18389 6pfy:A (2.9) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18390 6pfy:A (2.9) BS39 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18391 6pfy:A (2.9) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18392 6pfy:A (2.9) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18393 6pfy:A (2.9) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18394 6pfy:A (2.9) BS45 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18395 6pfy:A (2.9) BS46 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18396 6pfy:A (2.9) BS47 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18397 6pfy:A (2.9) BS48 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18398 6pfy:A (2.9) BS49 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18399 6pfy:A (2.9) BS50 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819
    18400 6pfy:A (2.9) BS51 CLA 1.97.1.12 GO:0000287 ... P0A405 31685819

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218