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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17801 6nwa:H (3.48) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17802 6nwa:H (3.48) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17803 6nwa:H (3.48) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17804 6nwa:H (3.48) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17805 6nwa:H (3.48) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17806 6nwa:H (3.48) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17807 6nwa:H (3.48) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17808 6nwa:H (3.48) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17809 6nwa:H (3.48) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17810 6nwa:H (3.48) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17811 6nwa:H (3.48) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17812 6nwa:H (3.48) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17813 6nwa:H (3.48) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17814 6nwa:H (3.48) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17815 6nwa:H (3.48) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17816 6nwa:H (3.48) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17817 6nwa:H (3.48) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17818 6nwa:H (3.48) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17819 6nwa:H (3.48) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17820 6nwa:H (3.48) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17821 6nwa:H (3.48) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17822 6nwa:H (3.48) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17823 6nwa:H (3.48) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17824 6nwa:H (3.48) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17825 6nwa:H (3.48) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17826 6nwa:H (3.48) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17827 6nwa:H (3.48) BS35 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17828 6nwa:H (3.48) BS36 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17829 6nwa:H (3.48) BS37 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17830 6nwa:H (3.48) BS38 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17831 6nwa:H (3.48) BS39 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17832 6nwa:H (3.48) BS40 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17833 6nwa:H (3.48) BS41 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17834 6nwa:H (3.48) BS42 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17835 6nwa:H (3.48) BS43 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17836 6nwa:H (3.48) BS44 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17837 6nwa:H (3.48) BS47 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17838 6nwa:H (3.48) BS48 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17839 6nwa:H (3.48) BS49 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17840 6nwa:H (3.48) BS50 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17841 6nwa:I (3.48) BS01 CLA ? GO:0009522 ... Q55330 31133699
    17842 6nwa:I (3.48) BS02 CLA ? GO:0009522 ... Q55330 31133699
    17843 6nwa:I (3.48) BS03 CLA ? GO:0009522 ... Q55330 31133699
    17844 6nwa:I (3.48) BS04 CLA ? GO:0009522 ... Q55330 31133699
    17845 6nwa:I (3.48) BS05 CLA ? GO:0009522 ... Q55330 31133699
    17846 6nwa:J (3.48) BS01 CLA ? GO:0009522 ... Q55329 31133699
    17847 6nwa:J (3.48) BS02 CLA ? GO:0009522 ... Q55329 31133699
    17848 6nwa:J (3.48) BS03 CLA ? GO:0009522 ... Q55329 31133699
    17849 6nwa:J (3.48) BS04 CLA ? GO:0009522 ... Q55329 31133699
    17850 6nwa:J (3.48) BS05 CLA ? GO:0009522 ... Q55329 31133699
    17851 6nwa:J (3.48) BS06 CLA ? GO:0009522 ... Q55329 31133699
    17852 6nwa:K (3.48) BS01 CLA ? GO:0009522 ... P72712 31133699
    17853 6nwa:K (3.48) BS02 CLA ? GO:0009522 ... P72712 31133699
    17854 6nwa:K (3.48) BS03 CLA ? GO:0009522 ... P72712 31133699
    17855 6nwa:K (3.48) BS04 CLA ? GO:0009522 ... P72712 31133699
    17856 6nwa:L (3.48) BS01 CLA ? GO:0005886 ... P37277 31133699
    17857 6nwa:L (3.48) BS02 CLA ? GO:0005886 ... P37277 31133699
    17858 6nwa:L (3.48) BS03 CLA ? GO:0005886 ... P37277 31133699
    17859 6nwa:L (3.48) BS04 CLA ? GO:0005886 ... P37277 31133699
    17860 6nwa:L (3.48) BS05 CLA ? GO:0005886 ... P37277 31133699
    17861 6nwa:L (3.48) BS06 CLA ? GO:0005886 ... P37277 31133699
    17862 6nwa:L (3.48) BS07 CLA ? GO:0005886 ... P37277 31133699
    17863 6nwa:M (3.48) BS01 CLA ? GO:0009522 ... P72986 31133699
    17864 6nwa:Q (3.48) BS01 CLA ? GO:0009522 ... P29256 31133699
    17865 6nwa:Q (3.48) BS02 CLA ? GO:0009522 ... P29256 31133699
    17866 6nwa:Q (3.48) BS03 CLA ? GO:0009522 ... P29256 31133699
    17867 6nwa:Q (3.48) BS04 CLA ? GO:0009522 ... P29256 31133699
    17868 6nwa:R (3.48) BS01 CLA ? GO:0009522 ... Q55330 31133699
    17869 6nwa:R (3.48) BS02 CLA ? GO:0009522 ... Q55330 31133699
    17870 6nwa:R (3.48) BS03 CLA ? GO:0009522 ... Q55330 31133699
    17871 6nwa:R (3.48) BS04 CLA ? GO:0009522 ... Q55330 31133699
    17872 6nwa:S (3.48) BS01 CLA ? GO:0009522 ... Q55329 31133699
    17873 6nwa:S (3.48) BS02 CLA ? GO:0009522 ... Q55329 31133699
    17874 6nwa:S (3.48) BS03 CLA ? GO:0009522 ... Q55329 31133699
    17875 6nwa:S (3.48) BS04 CLA ? GO:0009522 ... Q55329 31133699
    17876 6nwa:S (3.48) BS05 CLA ? GO:0009522 ... Q55329 31133699
    17877 6nwa:S (3.48) BS06 CLA ? GO:0009522 ... Q55329 31133699
    17878 6nwa:T (3.48) BS01 CLA ? GO:0009522 ... P72712 31133699
    17879 6nwa:T (3.48) BS02 CLA ? GO:0009522 ... P72712 31133699
    17880 6nwa:T (3.48) BS03 CLA ? GO:0009522 ... P72712 31133699
    17881 6nwa:U (3.48) BS01 CLA ? GO:0005886 ... P37277 31133699
    17882 6nwa:U (3.48) BS03 CLA ? GO:0005886 ... P37277 31133699
    17883 6nwa:U (3.48) BS04 CLA ? GO:0005886 ... P37277 31133699
    17884 6nwa:U (3.48) BS05 CLA ? GO:0005886 ... P37277 31133699
    17885 6nwa:U (3.48) BS06 CLA ? GO:0005886 ... P37277 31133699
    17886 6nwa:U (3.48) BS07 CLA ? GO:0005886 ... P37277 31133699
    17887 6nwa:U (3.48) BS08 CLA ? GO:0005886 ... P37277 31133699
    17888 6nwa:U (3.48) BS09 CLA ? GO:0005886 ... P37277 31133699
    17889 6nwa:U (3.48) BS10 CLA ? GO:0005886 ... P37277 31133699
    17890 6nwa:V (3.48) BS01 CLA ? GO:0009522 ... P72986 31133699
    17891 6nwa:W (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    17892 6nwa:W (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    17893 6nwa:W (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    17894 6nwa:W (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    17895 6nwa:W (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    17896 6nwa:W (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    17897 6nwa:W (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    17898 6nwa:W (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    17899 6nwa:W (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    17900 6nwa:W (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    17901 6nwa:W (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    17902 6nwa:W (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    17903 6nwa:W (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    17904 6nwa:W (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    17905 6nwa:W (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    17906 6nwa:W (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    17907 6nwa:W (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    17908 6nwa:W (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    17909 6nwa:X (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    17910 6nwa:X (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    17911 6nwa:X (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    17912 6nwa:X (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    17913 6nwa:X (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    17914 6nwa:X (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    17915 6nwa:X (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    17916 6nwa:X (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    17917 6nwa:X (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    17918 6nwa:X (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    17919 6nwa:X (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    17920 6nwa:X (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    17921 6nwa:X (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    17922 6nwa:X (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    17923 6nwa:X (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    17924 6nwa:X (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    17925 6nwa:X (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    17926 6nwa:X (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    17927 6nwa:X (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    17928 6nwa:Y (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    17929 6nwa:Y (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    17930 6nwa:Y (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    17931 6nwa:Y (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    17932 6nwa:Y (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    17933 6nwa:Y (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    17934 6nwa:Y (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    17935 6nwa:Y (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    17936 6nwa:Y (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    17937 6nwa:Y (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    17938 6nwa:Y (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    17939 6nwa:Y (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    17940 6nwa:Y (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    17941 6nwa:Y (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    17942 6nwa:Y (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    17943 6nwa:Y (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    17944 6nwa:Y (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    17945 6nwa:Y (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    17946 6nwa:Y (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    17947 6nwa:Y (3.48) BS20 CLA ? GO:0005886 ... Q55274 31133699
    17948 6nwa:Z (3.48) BS01 CLA ? GO:0005886 ... Q55274 31133699
    17949 6nwa:Z (3.48) BS02 CLA ? GO:0005886 ... Q55274 31133699
    17950 6nwa:Z (3.48) BS03 CLA ? GO:0005886 ... Q55274 31133699
    17951 6nwa:Z (3.48) BS04 CLA ? GO:0005886 ... Q55274 31133699
    17952 6nwa:Z (3.48) BS05 CLA ? GO:0005886 ... Q55274 31133699
    17953 6nwa:Z (3.48) BS06 CLA ? GO:0005886 ... Q55274 31133699
    17954 6nwa:Z (3.48) BS07 CLA ? GO:0005886 ... Q55274 31133699
    17955 6nwa:Z (3.48) BS08 CLA ? GO:0005886 ... Q55274 31133699
    17956 6nwa:Z (3.48) BS09 CLA ? GO:0005886 ... Q55274 31133699
    17957 6nwa:Z (3.48) BS10 CLA ? GO:0005886 ... Q55274 31133699
    17958 6nwa:Z (3.48) BS11 CLA ? GO:0005886 ... Q55274 31133699
    17959 6nwa:Z (3.48) BS12 CLA ? GO:0005886 ... Q55274 31133699
    17960 6nwa:Z (3.48) BS13 CLA ? GO:0005886 ... Q55274 31133699
    17961 6nwa:Z (3.48) BS14 CLA ? GO:0005886 ... Q55274 31133699
    17962 6nwa:Z (3.48) BS15 CLA ? GO:0005886 ... Q55274 31133699
    17963 6nwa:Z (3.48) BS16 CLA ? GO:0005886 ... Q55274 31133699
    17964 6nwa:Z (3.48) BS17 CLA ? GO:0005886 ... Q55274 31133699
    17965 6nwa:Z (3.48) BS18 CLA ? GO:0005886 ... Q55274 31133699
    17966 6nwa:Z (3.48) BS19 CLA ? GO:0005886 ... Q55274 31133699
    17967 6nwa:Z (3.48) BS20 CLA ? GO:0005886 ... Q55274 31133699
    17968 6nwa:a (3.48) BS02 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17969 6nwa:a (3.48) BS03 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17970 6nwa:a (3.48) BS04 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17971 6nwa:a (3.48) BS05 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17972 6nwa:a (3.48) BS06 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17973 6nwa:a (3.48) BS07 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17974 6nwa:a (3.48) BS08 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17975 6nwa:a (3.48) BS09 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17976 6nwa:a (3.48) BS10 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17977 6nwa:a (3.48) BS11 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17978 6nwa:a (3.48) BS12 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17979 6nwa:a (3.48) BS13 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17980 6nwa:a (3.48) BS14 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17981 6nwa:a (3.48) BS15 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17982 6nwa:a (3.48) BS16 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17983 6nwa:a (3.48) BS17 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17984 6nwa:a (3.48) BS18 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17985 6nwa:a (3.48) BS19 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17986 6nwa:a (3.48) BS20 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17987 6nwa:a (3.48) BS21 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17988 6nwa:a (3.48) BS22 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17989 6nwa:a (3.48) BS23 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17990 6nwa:a (3.48) BS24 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17991 6nwa:a (3.48) BS25 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17992 6nwa:a (3.48) BS26 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17993 6nwa:a (3.48) BS27 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17994 6nwa:a (3.48) BS28 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17995 6nwa:a (3.48) BS29 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17996 6nwa:a (3.48) BS30 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17997 6nwa:a (3.48) BS31 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17998 6nwa:a (3.48) BS32 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    17999 6nwa:a (3.48) BS33 CLA 1.97.1.12 GO:0000287 ... P29254 31133699
    18000 6nwa:a (3.48) BS34 CLA 1.97.1.12 GO:0000287 ... P29254 31133699

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218