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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    17001 6l4u:16 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17002 6l4u:16 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17003 6l4u:16 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17004 6l4u:16 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17005 6l4u:16 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    17006 6l4u:16 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    17007 6l4u:2 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    17008 6l4u:2 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17009 6l4u:2 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17010 6l4u:2 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17011 6l4u:2 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17012 6l4u:2 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17013 6l4u:2 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17014 6l4u:2 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    17015 6l4u:2 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    17016 6l4u:2 (2.4) BS12 CLA N/A GO:0009765 ... N/A N/A
    17017 6l4u:2 (2.4) BS14 CLA N/A GO:0009765 ... N/A N/A
    17018 6l4u:2u (2.4) BS01 CLA N/A N/A N/A N/A
    17019 6l4u:2u (2.4) BS02 CLA N/A N/A N/A N/A
    17020 6l4u:2u (2.4) BS03 CLA N/A N/A N/A N/A
    17021 6l4u:3 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    17022 6l4u:3 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    17023 6l4u:3 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17024 6l4u:3 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17025 6l4u:3 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17026 6l4u:3 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17027 6l4u:3 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17028 6l4u:3 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17029 6l4u:4 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    17030 6l4u:4 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    17031 6l4u:4 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17032 6l4u:4 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17033 6l4u:4 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17034 6l4u:4 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17035 6l4u:4 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17036 6l4u:4 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17037 6l4u:4 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    17038 6l4u:4 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    17039 6l4u:5 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    17040 6l4u:5 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17041 6l4u:5 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17042 6l4u:5 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17043 6l4u:5 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17044 6l4u:5 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17045 6l4u:5 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    17046 6l4u:6 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17047 6l4u:6 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17048 6l4u:6 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17049 6l4u:6 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17050 6l4u:6 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17051 6l4u:6 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17052 6l4u:6 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    17053 6l4u:6 (2.4) BS14 CLA N/A GO:0009765 ... N/A N/A
    17054 6l4u:6 (2.4) BS15 CLA N/A GO:0009765 ... N/A N/A
    17055 6l4u:6 (2.4) BS16 CLA N/A GO:0009765 ... N/A N/A
    17056 6l4u:7 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    17057 6l4u:7 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17058 6l4u:7 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17059 6l4u:7 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17060 6l4u:7 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17061 6l4u:7 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17062 6l4u:7 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17063 6l4u:7 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    17064 6l4u:7 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    17065 6l4u:7 (2.4) BS12 CLA N/A GO:0009765 ... N/A N/A
    17066 6l4u:7 (2.4) BS19 CLA N/A GO:0009765 ... N/A N/A
    17067 6l4u:8 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    17068 6l4u:8 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    17069 6l4u:8 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17070 6l4u:8 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17071 6l4u:8 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17072 6l4u:8 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17073 6l4u:8 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    17074 6l4u:8 (2.4) BS12 CLA N/A GO:0009765 ... N/A N/A
    17075 6l4u:8 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    17076 6l4u:9 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    17077 6l4u:9 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    17078 6l4u:9 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    17079 6l4u:9 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    17080 6l4u:9 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    17081 6l4u:9 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    17082 6l4u:A (2.4) BS02 CLA N/A GO:0009579 ... N/A N/A
    17083 6l4u:A (2.4) BS03 CLA N/A GO:0009579 ... N/A N/A
    17084 6l4u:A (2.4) BS04 CLA N/A GO:0009579 ... N/A N/A
    17085 6l4u:A (2.4) BS05 CLA N/A GO:0009579 ... N/A N/A
    17086 6l4u:A (2.4) BS06 CLA N/A GO:0009579 ... N/A N/A
    17087 6l4u:A (2.4) BS07 CLA N/A GO:0009579 ... N/A N/A
    17088 6l4u:A (2.4) BS08 CLA N/A GO:0009579 ... N/A N/A
    17089 6l4u:A (2.4) BS09 CLA N/A GO:0009579 ... N/A N/A
    17090 6l4u:A (2.4) BS10 CLA N/A GO:0009579 ... N/A N/A
    17091 6l4u:A (2.4) BS11 CLA N/A GO:0009579 ... N/A N/A
    17092 6l4u:A (2.4) BS12 CLA N/A GO:0009579 ... N/A N/A
    17093 6l4u:A (2.4) BS13 CLA N/A GO:0009579 ... N/A N/A
    17094 6l4u:A (2.4) BS14 CLA N/A GO:0009579 ... N/A N/A
    17095 6l4u:A (2.4) BS15 CLA N/A GO:0009579 ... N/A N/A
    17096 6l4u:A (2.4) BS16 CLA N/A GO:0009579 ... N/A N/A
    17097 6l4u:A (2.4) BS17 CLA N/A GO:0009579 ... N/A N/A
    17098 6l4u:A (2.4) BS18 CLA N/A GO:0009579 ... N/A N/A
    17099 6l4u:A (2.4) BS19 CLA N/A GO:0009579 ... N/A N/A
    17100 6l4u:A (2.4) BS20 CLA N/A GO:0009579 ... N/A N/A
    17101 6l4u:A (2.4) BS21 CLA N/A GO:0009579 ... N/A N/A
    17102 6l4u:A (2.4) BS22 CLA N/A GO:0009579 ... N/A N/A
    17103 6l4u:A (2.4) BS23 CLA N/A GO:0009579 ... N/A N/A
    17104 6l4u:A (2.4) BS24 CLA N/A GO:0009579 ... N/A N/A
    17105 6l4u:A (2.4) BS25 CLA N/A GO:0009579 ... N/A N/A
    17106 6l4u:A (2.4) BS26 CLA N/A GO:0009579 ... N/A N/A
    17107 6l4u:A (2.4) BS27 CLA N/A GO:0009579 ... N/A N/A
    17108 6l4u:A (2.4) BS28 CLA N/A GO:0009579 ... N/A N/A
    17109 6l4u:A (2.4) BS29 CLA N/A GO:0009579 ... N/A N/A
    17110 6l4u:A (2.4) BS30 CLA N/A GO:0009579 ... N/A N/A
    17111 6l4u:A (2.4) BS31 CLA N/A GO:0009579 ... N/A N/A
    17112 6l4u:A (2.4) BS32 CLA N/A GO:0009579 ... N/A N/A
    17113 6l4u:A (2.4) BS33 CLA N/A GO:0009579 ... N/A N/A
    17114 6l4u:A (2.4) BS34 CLA N/A GO:0009579 ... N/A N/A
    17115 6l4u:A (2.4) BS35 CLA N/A GO:0009579 ... N/A N/A
    17116 6l4u:A (2.4) BS36 CLA N/A GO:0009579 ... N/A N/A
    17117 6l4u:A (2.4) BS37 CLA N/A GO:0009579 ... N/A N/A
    17118 6l4u:A (2.4) BS38 CLA N/A GO:0009579 ... N/A N/A
    17119 6l4u:A (2.4) BS39 CLA N/A GO:0009579 ... N/A N/A
    17120 6l4u:A (2.4) BS40 CLA N/A GO:0009579 ... N/A N/A
    17121 6l4u:A (2.4) BS41 CLA N/A GO:0009579 ... N/A N/A
    17122 6l4u:A (2.4) BS42 CLA N/A GO:0009579 ... N/A N/A
    17123 6l4u:A (2.4) BS43 CLA N/A GO:0009579 ... N/A N/A
    17124 6l4u:A (2.4) BS44 CLA N/A GO:0009579 ... N/A N/A
    17125 6l4u:A (2.4) BS47 CLA N/A GO:0009579 ... N/A N/A
    17126 6l4u:A (2.4) BS48 CLA N/A GO:0009579 ... N/A N/A
    17127 6l4u:A (2.4) BS49 CLA N/A GO:0009579 ... N/A N/A
    17128 6l4u:A (2.4) BS50 CLA N/A GO:0009579 ... N/A N/A
    17129 6l4u:A (2.4) BS51 CLA N/A GO:0009579 ... N/A N/A
    17130 6l4u:A (2.4) BS53 CLA N/A GO:0009579 ... N/A N/A
    17131 6l4u:B (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    17132 6l4u:B (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    17133 6l4u:B (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    17134 6l4u:B (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    17135 6l4u:B (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    17136 6l4u:B (2.4) BS08 CLA N/A GO:0009522 ... N/A N/A
    17137 6l4u:B (2.4) BS09 CLA N/A GO:0009522 ... N/A N/A
    17138 6l4u:B (2.4) BS10 CLA N/A GO:0009522 ... N/A N/A
    17139 6l4u:B (2.4) BS11 CLA N/A GO:0009522 ... N/A N/A
    17140 6l4u:B (2.4) BS12 CLA N/A GO:0009522 ... N/A N/A
    17141 6l4u:B (2.4) BS13 CLA N/A GO:0009522 ... N/A N/A
    17142 6l4u:B (2.4) BS14 CLA N/A GO:0009522 ... N/A N/A
    17143 6l4u:B (2.4) BS15 CLA N/A GO:0009522 ... N/A N/A
    17144 6l4u:B (2.4) BS16 CLA N/A GO:0009522 ... N/A N/A
    17145 6l4u:B (2.4) BS17 CLA N/A GO:0009522 ... N/A N/A
    17146 6l4u:B (2.4) BS18 CLA N/A GO:0009522 ... N/A N/A
    17147 6l4u:B (2.4) BS19 CLA N/A GO:0009522 ... N/A N/A
    17148 6l4u:B (2.4) BS20 CLA N/A GO:0009522 ... N/A N/A
    17149 6l4u:B (2.4) BS21 CLA N/A GO:0009522 ... N/A N/A
    17150 6l4u:B (2.4) BS22 CLA N/A GO:0009522 ... N/A N/A
    17151 6l4u:B (2.4) BS23 CLA N/A GO:0009522 ... N/A N/A
    17152 6l4u:B (2.4) BS24 CLA N/A GO:0009522 ... N/A N/A
    17153 6l4u:B (2.4) BS25 CLA N/A GO:0009522 ... N/A N/A
    17154 6l4u:B (2.4) BS26 CLA N/A GO:0009522 ... N/A N/A
    17155 6l4u:B (2.4) BS27 CLA N/A GO:0009522 ... N/A N/A
    17156 6l4u:B (2.4) BS28 CLA N/A GO:0009522 ... N/A N/A
    17157 6l4u:B (2.4) BS29 CLA N/A GO:0009522 ... N/A N/A
    17158 6l4u:B (2.4) BS30 CLA N/A GO:0009522 ... N/A N/A
    17159 6l4u:B (2.4) BS31 CLA N/A GO:0009522 ... N/A N/A
    17160 6l4u:B (2.4) BS32 CLA N/A GO:0009522 ... N/A N/A
    17161 6l4u:B (2.4) BS33 CLA N/A GO:0009522 ... N/A N/A
    17162 6l4u:B (2.4) BS34 CLA N/A GO:0009522 ... N/A N/A
    17163 6l4u:B (2.4) BS35 CLA N/A GO:0009522 ... N/A N/A
    17164 6l4u:B (2.4) BS36 CLA N/A GO:0009522 ... N/A N/A
    17165 6l4u:B (2.4) BS37 CLA N/A GO:0009522 ... N/A N/A
    17166 6l4u:B (2.4) BS38 CLA N/A GO:0009522 ... N/A N/A
    17167 6l4u:B (2.4) BS39 CLA N/A GO:0009522 ... N/A N/A
    17168 6l4u:B (2.4) BS40 CLA N/A GO:0009522 ... N/A N/A
    17169 6l4u:B (2.4) BS41 CLA N/A GO:0009522 ... N/A N/A
    17170 6l4u:B (2.4) BS42 CLA N/A GO:0009522 ... N/A N/A
    17171 6l4u:B (2.4) BS43 CLA N/A GO:0009522 ... N/A N/A
    17172 6l4u:B (2.4) BS44 CLA N/A GO:0009522 ... N/A N/A
    17173 6l4u:B (2.4) BS45 CLA N/A GO:0009522 ... N/A N/A
    17174 6l4u:B (2.4) BS46 CLA N/A GO:0009522 ... N/A N/A
    17175 6l4u:B (2.4) BS48 CLA N/A GO:0009522 ... N/A N/A
    17176 6l4u:B (2.4) BS49 CLA N/A GO:0009522 ... N/A N/A
    17177 6l4u:B (2.4) BS50 CLA N/A GO:0009522 ... N/A N/A
    17178 6l4u:B (2.4) BS51 CLA N/A GO:0009522 ... N/A N/A
    17179 6l4u:F (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    17180 6l4u:F (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    17181 6l4u:F (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    17182 6l4u:F (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    17183 6l4u:F (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    17184 6l4u:F (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    17185 6l4u:F (2.4) BS07 CLA N/A GO:0009522 ... N/A N/A
    17186 6l4u:I (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    17187 6l4u:I (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    17188 6l4u:I (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    17189 6l4u:J (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    17190 6l4u:J (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    17191 6l4u:J (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    17192 6l4u:J (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    17193 6l4u:J (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    17194 6l4u:J (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    17195 6l4u:L (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    17196 6l4u:L (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    17197 6l4u:L (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    17198 6l4u:L (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    17199 6l4u:L (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    17200 6l4u:L (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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