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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    16801 6l35:B (3.23) BS27 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16802 6l35:B (3.23) BS28 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16803 6l35:B (3.23) BS29 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16804 6l35:B (3.23) BS30 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16805 6l35:B (3.23) BS31 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16806 6l35:B (3.23) BS32 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16807 6l35:B (3.23) BS33 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16808 6l35:B (3.23) BS34 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16809 6l35:B (3.23) BS35 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16810 6l35:B (3.23) BS36 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16811 6l35:B (3.23) BS37 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16812 6l35:B (3.23) BS38 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16813 6l35:B (3.23) BS39 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16814 6l35:B (3.23) BS40 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16815 6l35:B (3.23) BS41 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16816 6l35:B (3.23) BS42 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16817 6l35:B (3.23) BS43 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16818 6l35:B (3.23) BS44 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16819 6l35:B (3.23) BS45 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16820 6l35:B (3.23) BS46 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16821 6l35:B (3.23) BS47 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16822 6l35:B (3.23) BS49 CLA 1.97.1.12 GO:0000287 ... Q8MFA2 33589616
    16823 6l35:F (3.23) BS01 CLA ? GO:0009522 ... A0A2K1J0L9 33589616
    16824 6l35:F (3.23) BS02 CLA ? GO:0009522 ... A0A2K1J0L9 33589616
    16825 6l35:F (3.23) BS03 CLA ? GO:0009522 ... A0A2K1J0L9 33589616
    16826 6l35:F (3.23) BS04 CLA ? GO:0009522 ... A0A2K1J0L9 33589616
    16827 6l35:F (3.23) BS05 CLA ? GO:0009522 ... A0A2K1J0L9 33589616
    16828 6l35:G (3.23) BS01 CLA ? GO:0009522 ... A0A2K1JC42 33589616
    16829 6l35:G (3.23) BS02 CLA ? GO:0009522 ... A0A2K1JC42 33589616
    16830 6l35:G (3.23) BS03 CLA ? GO:0009522 ... A0A2K1JC42 33589616
    16831 6l35:G (3.23) BS04 CLA ? GO:0009522 ... A0A2K1JC42 33589616
    16832 6l35:H (3.23) BS01 CLA ? GO:0009522 ... A9SL09 33589616
    16833 6l35:I (3.23) BS02 CLA ? GO:0009507 ... Q6YXR3 33589616
    16834 6l35:J (3.23) BS01 CLA ? GO:0009507 ... Q6YXM2 33589616
    16835 6l35:J (3.23) BS02 CLA ? GO:0009507 ... Q6YXM2 33589616
    16836 6l35:J (3.23) BS03 CLA ? GO:0009507 ... Q6YXM2 33589616
    16837 6l35:J (3.23) BS04 CLA ? GO:0009507 ... Q6YXM2 33589616
    16838 6l35:K (3.23) BS01 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    16839 6l35:K (3.23) BS02 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    16840 6l35:K (3.23) BS03 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    16841 6l35:K (3.23) BS04 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    16842 6l35:L (3.23) BS01 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    16843 6l35:L (3.23) BS02 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    16844 6l35:L (3.23) BS03 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    16845 6l35:L (3.23) BS04 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    16846 6l35:L (3.23) BS05 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    16847 6l4t:10 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16848 6l4t:10 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16849 6l4t:10 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16850 6l4t:10 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16851 6l4t:10 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16852 6l4t:10 (2.6) BS12 CLA N/A GO:0009765 ... N/A N/A
    16853 6l4t:10 (2.6) BS14 CLA N/A GO:0009765 ... N/A N/A
    16854 6l4t:11 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16855 6l4t:11 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16856 6l4t:11 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16857 6l4t:11 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16858 6l4t:11 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16859 6l4t:12 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16860 6l4t:12 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16861 6l4t:12 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16862 6l4t:12 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16863 6l4t:12 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16864 6l4t:12 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16865 6l4t:12 (2.6) BS09 CLA N/A GO:0009765 ... N/A N/A
    16866 6l4t:12 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16867 6l4t:12 (2.6) BS17 CLA N/A GO:0009765 ... N/A N/A
    16868 6l4t:13 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16869 6l4t:13 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16870 6l4t:13 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16871 6l4t:13 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16872 6l4t:13 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16873 6l4t:13 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16874 6l4t:13 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16875 6l4t:14 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16876 6l4t:14 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16877 6l4t:14 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16878 6l4t:14 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16879 6l4t:14 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16880 6l4t:14 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16881 6l4t:14 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16882 6l4t:14 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16883 6l4t:14 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16884 6l4t:14 (2.6) BS13 CLA N/A GO:0009765 ... N/A N/A
    16885 6l4t:14 (2.6) BS14 CLA N/A GO:0009765 ... N/A N/A
    16886 6l4t:15 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16887 6l4t:15 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16888 6l4t:15 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16889 6l4t:15 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16890 6l4t:15 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16891 6l4t:15 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16892 6l4t:15 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16893 6l4t:15 (2.6) BS09 CLA N/A GO:0009765 ... N/A N/A
    16894 6l4t:15 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16895 6l4t:15 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16896 6l4t:15 (2.6) BS12 CLA N/A GO:0009765 ... N/A N/A
    16897 6l4t:15 (2.6) BS13 CLA N/A GO:0009765 ... N/A N/A
    16898 6l4t:15 (2.6) BS14 CLA N/A GO:0009765 ... N/A N/A
    16899 6l4t:15 (2.6) BS15 CLA N/A GO:0009765 ... N/A N/A
    16900 6l4t:16 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16901 6l4t:16 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16902 6l4t:16 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16903 6l4t:16 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16904 6l4t:16 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16905 6l4t:16 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16906 6l4t:16 (2.6) BS09 CLA N/A GO:0009765 ... N/A N/A
    16907 6l4t:16 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16908 6l4t:16 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16909 6l4t:6 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16910 6l4t:6 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16911 6l4t:6 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16912 6l4t:6 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16913 6l4t:6 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16914 6l4t:6 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16915 6l4t:6 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16916 6l4t:6 (2.6) BS12 CLA N/A GO:0009765 ... N/A N/A
    16917 6l4t:6 (2.6) BS13 CLA N/A GO:0009765 ... N/A N/A
    16918 6l4t:6 (2.6) BS14 CLA N/A GO:0009765 ... N/A N/A
    16919 6l4t:7 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16920 6l4t:7 (2.6) BS03 CLA N/A GO:0009765 ... N/A N/A
    16921 6l4t:7 (2.6) BS04 CLA N/A GO:0009765 ... N/A N/A
    16922 6l4t:7 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16923 6l4t:7 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16924 6l4t:7 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16925 6l4t:7 (2.6) BS09 CLA N/A GO:0009765 ... N/A N/A
    16926 6l4t:7 (2.6) BS10 CLA N/A GO:0009765 ... N/A N/A
    16927 6l4t:7 (2.6) BS11 CLA N/A GO:0009765 ... N/A N/A
    16928 6l4t:8 (2.6) BS01 CLA N/A GO:0009765 ... N/A N/A
    16929 6l4t:8 (2.6) BS02 CLA N/A GO:0009765 ... N/A N/A
    16930 6l4t:8 (2.6) BS05 CLA N/A GO:0009765 ... N/A N/A
    16931 6l4t:8 (2.6) BS06 CLA N/A GO:0009765 ... N/A N/A
    16932 6l4t:8 (2.6) BS07 CLA N/A GO:0009765 ... N/A N/A
    16933 6l4t:8 (2.6) BS08 CLA N/A GO:0009765 ... N/A N/A
    16934 6l4t:8 (2.6) BS09 CLA N/A GO:0009765 ... N/A N/A
    16935 6l4t:8 (2.6) BS12 CLA N/A GO:0009765 ... N/A N/A
    16936 6l4t:8 (2.6) BS13 CLA N/A GO:0009765 ... N/A N/A
    16937 6l4u:1 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    16938 6l4u:1 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16939 6l4u:1 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    16940 6l4u:1 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    16941 6l4u:1 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16942 6l4u:1 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16943 6l4u:1 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    16944 6l4u:1 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    16945 6l4u:10 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16946 6l4u:10 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16947 6l4u:10 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    16948 6l4u:10 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    16949 6l4u:10 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    16950 6l4u:10 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    16951 6l4u:10 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    16952 6l4u:11 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16953 6l4u:11 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    16954 6l4u:11 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16955 6l4u:11 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    16956 6l4u:11 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    16957 6l4u:12 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    16958 6l4u:12 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16959 6l4u:12 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    16960 6l4u:12 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16961 6l4u:12 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16962 6l4u:12 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    16963 6l4u:12 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    16964 6l4u:12 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    16965 6l4u:12 (2.4) BS17 CLA N/A GO:0009765 ... N/A N/A
    16966 6l4u:13 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    16967 6l4u:13 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16968 6l4u:13 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    16969 6l4u:13 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    16970 6l4u:13 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16971 6l4u:13 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16972 6l4u:13 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    16973 6l4u:13 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    16974 6l4u:14 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    16975 6l4u:14 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16976 6l4u:14 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    16977 6l4u:14 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    16978 6l4u:14 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16979 6l4u:14 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16980 6l4u:14 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    16981 6l4u:14 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    16982 6l4u:14 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    16983 6l4u:14 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    16984 6l4u:14 (2.4) BS14 CLA N/A GO:0009765 ... N/A N/A
    16985 6l4u:15 (2.4) BS01 CLA N/A GO:0009765 ... N/A N/A
    16986 6l4u:15 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16987 6l4u:15 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    16988 6l4u:15 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    16989 6l4u:15 (2.4) BS05 CLA N/A GO:0009765 ... N/A N/A
    16990 6l4u:15 (2.4) BS06 CLA N/A GO:0009765 ... N/A N/A
    16991 6l4u:15 (2.4) BS07 CLA N/A GO:0009765 ... N/A N/A
    16992 6l4u:15 (2.4) BS08 CLA N/A GO:0009765 ... N/A N/A
    16993 6l4u:15 (2.4) BS09 CLA N/A GO:0009765 ... N/A N/A
    16994 6l4u:15 (2.4) BS10 CLA N/A GO:0009765 ... N/A N/A
    16995 6l4u:15 (2.4) BS11 CLA N/A GO:0009765 ... N/A N/A
    16996 6l4u:15 (2.4) BS12 CLA N/A GO:0009765 ... N/A N/A
    16997 6l4u:15 (2.4) BS13 CLA N/A GO:0009765 ... N/A N/A
    16998 6l4u:16 (2.4) BS02 CLA N/A GO:0009765 ... N/A N/A
    16999 6l4u:16 (2.4) BS03 CLA N/A GO:0009765 ... N/A N/A
    17000 6l4u:16 (2.4) BS04 CLA N/A GO:0009765 ... N/A N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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