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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1401 3jcu:R (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    1402 3jcu:R (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    1403 3jcu:R (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    1404 3jcu:S (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    1405 3jcu:S (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    1406 3jcu:S (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    1407 3jcu:S (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    1408 3jcu:S (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    1409 3jcu:S (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    1410 3jcu:S (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    1411 3jcu:S (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    1412 3jcu:S (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    1413 3jcu:S (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    1414 3jcu:W (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    1415 3jcu:Y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1416 3jcu:Y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    1417 3jcu:Y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    1418 3jcu:Y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1419 3jcu:Y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1420 3jcu:Y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1421 3jcu:Y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    1422 3jcu:Y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    1423 3jcu:Z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    1424 3jcu:a (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1425 3jcu:a (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1426 3jcu:a (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1427 3jcu:a (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1428 3jcu:a (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1429 3jcu:b (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    1430 3jcu:b (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    1431 3jcu:b (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    1432 3jcu:b (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    1433 3jcu:b (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    1434 3jcu:b (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    1435 3jcu:b (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    1436 3jcu:b (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    1437 3jcu:b (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    1438 3jcu:b (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    1439 3jcu:b (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    1440 3jcu:b (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    1441 3jcu:b (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    1442 3jcu:b (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    1443 3jcu:b (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    1444 3jcu:b (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    1445 3jcu:b (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    1446 3jcu:c (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    1447 3jcu:c (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    1448 3jcu:c (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    1449 3jcu:c (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    1450 3jcu:c (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    1451 3jcu:c (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    1452 3jcu:c (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    1453 3jcu:c (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    1454 3jcu:c (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    1455 3jcu:c (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    1456 3jcu:c (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    1457 3jcu:c (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    1458 3jcu:c (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    1459 3jcu:d (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1460 3jcu:d (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1461 3jcu:d (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1462 3jcu:d (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1463 3jcu:d (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1464 3jcu:g (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    1465 3jcu:g (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    1466 3jcu:g (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1467 3jcu:g (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    1468 3jcu:g (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    1469 3jcu:g (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1470 3jcu:g (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1471 3jcu:g (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1472 3jcu:h (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    1473 3jcu:h (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    1474 3jcu:h (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    1475 3jcu:h (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    1476 3jcu:i (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    1477 3jcu:i (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    1478 3jcu:k (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    1479 3jcu:k (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    1480 3jcu:k (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    1481 3jcu:n (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1482 3jcu:n (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    1483 3jcu:n (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    1484 3jcu:n (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1485 3jcu:n (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1486 3jcu:n (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1487 3jcu:n (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    1488 3jcu:n (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    1489 3jcu:r (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    1490 3jcu:r (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    1491 3jcu:r (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    1492 3jcu:r (3.2) BS05 CLA ? GO:0009416 ... F2Z293 27251276
    1493 3jcu:r (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    1494 3jcu:r (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    1495 3jcu:r (3.2) BS11 CLA ? GO:0009416 ... F2Z293 27251276
    1496 3jcu:r (3.2) BS12 CLA ? GO:0009416 ... F2Z293 27251276
    1497 3jcu:r (3.2) BS13 CLA ? GO:0009416 ... F2Z293 27251276
    1498 3jcu:r (3.2) BS14 CLA ? GO:0009416 ... F2Z293 27251276
    1499 3jcu:s (3.2) BS01 CLA N/A GO:0009765 ... N/A 27251276
    1500 3jcu:s (3.2) BS04 CLA N/A GO:0009765 ... N/A 27251276
    1501 3jcu:s (3.2) BS05 CLA N/A GO:0009765 ... N/A 27251276
    1502 3jcu:s (3.2) BS06 CLA N/A GO:0009765 ... N/A 27251276
    1503 3jcu:s (3.2) BS10 CLA N/A GO:0009765 ... N/A 27251276
    1504 3jcu:s (3.2) BS11 CLA N/A GO:0009765 ... N/A 27251276
    1505 3jcu:s (3.2) BS12 CLA N/A GO:0009765 ... N/A 27251276
    1506 3jcu:s (3.2) BS13 CLA N/A GO:0009765 ... N/A 27251276
    1507 3jcu:s (3.2) BS14 CLA N/A GO:0009765 ... N/A 27251276
    1508 3jcu:s (3.2) BS15 CLA N/A GO:0009765 ... N/A 27251276
    1509 3jcu:w (3.2) BS01 CLA ? GO:0009507 ... Q41387 27251276
    1510 3jcu:y (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1511 3jcu:y (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    1512 3jcu:y (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    1513 3jcu:y (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1514 3jcu:y (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1515 3jcu:y (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1516 3jcu:y (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    1517 3jcu:y (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    1518 3jcu:z (3.2) BS01 CLA ? GO:0009507 ... Q9M3M6 27251276
    1519 3kzi:A (3.6) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    1520 3kzi:A (3.6) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    1521 3kzi:A (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    1522 3kzi:A (3.6) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    1523 3kzi:A (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 20558739
    1524 3kzi:B (3.6) BS01 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1525 3kzi:B (3.6) BS02 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1526 3kzi:B (3.6) BS03 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1527 3kzi:B (3.6) BS04 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1528 3kzi:B (3.6) BS05 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1529 3kzi:B (3.6) BS06 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1530 3kzi:B (3.6) BS07 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1531 3kzi:B (3.6) BS08 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1532 3kzi:B (3.6) BS09 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1533 3kzi:B (3.6) BS10 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1534 3kzi:B (3.6) BS11 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1535 3kzi:B (3.6) BS12 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1536 3kzi:B (3.6) BS13 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1537 3kzi:B (3.6) BS14 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1538 3kzi:B (3.6) BS15 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1539 3kzi:B (3.6) BS16 CLA ? GO:0009521 ... Q8DIQ1 20558739
    1540 3kzi:C (3.6) BS01 CLA ? GO:0005737 ... Q8DIF8 20558739
    1541 3kzi:C (3.6) BS02 CLA ? GO:0005737 ... Q8DIF8 20558739
    1542 3kzi:C (3.6) BS03 CLA ? GO:0005737 ... Q8DIF8 20558739
    1543 3kzi:C (3.6) BS04 CLA ? GO:0005737 ... Q8DIF8 20558739
    1544 3kzi:C (3.6) BS05 CLA ? GO:0005737 ... Q8DIF8 20558739
    1545 3kzi:C (3.6) BS06 CLA ? GO:0005737 ... Q8DIF8 20558739
    1546 3kzi:C (3.6) BS07 CLA ? GO:0005737 ... Q8DIF8 20558739
    1547 3kzi:C (3.6) BS08 CLA ? GO:0005737 ... Q8DIF8 20558739
    1548 3kzi:C (3.6) BS09 CLA ? GO:0005737 ... Q8DIF8 20558739
    1549 3kzi:C (3.6) BS10 CLA ? GO:0005737 ... Q8DIF8 20558739
    1550 3kzi:C (3.6) BS11 CLA ? GO:0005737 ... Q8DIF8 20558739
    1551 3kzi:C (3.6) BS12 CLA ? GO:0005737 ... Q8DIF8 20558739
    1552 3kzi:C (3.6) BS15 CLA ? GO:0005737 ... Q8DIF8 20558739
    1553 3kzi:D (3.6) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    1554 3kzi:D (3.6) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    1555 3kzi:D (3.6) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    1556 3kzi:D (3.6) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    1557 3kzi:D (3.6) BS09 CLA 1.10.3.9 GO:0005506 ... Q8CM25 20558739
    1558 3kzi:H (3.6) BS01 CLA ? GO:0009523 ... Q8DJ43 20558739
    1559 3kzi:H (3.6) BS02 CLA ? GO:0009523 ... Q8DJ43 20558739
    1560 3kzi:H (3.6) BS03 CLA ? GO:0009523 ... Q8DJ43 20558739
    1561 3kzi:H (3.6) BS04 CLA ? GO:0009523 ... Q8DJ43 20558739
    1562 3kzi:I (3.6) BS01 CLA ? GO:0005737 ... Q8DJZ6 20558739
    1563 3kzi:I (3.6) BS02 CLA ? GO:0005737 ... Q8DJZ6 20558739
    1564 3kzi:K (3.6) BS02 CLA ? GO:0009523 ... Q9F1K9 20558739
    1565 3kzi:K (3.6) BS05 CLA ? GO:0009523 ... Q9F1K9 20558739
    1566 3kzi:X (3.6) BS01 CLA ? GO:0009523 ... Q9F1R6 20558739
    1567 3kzi:Z (3.6) BS02 CLA ? GO:0009523 ... Q8DHJ2 20558739
    1568 3lw5:1 (3.3) BS01 CLA ? GO:0009416 ... E1C9L2 19923216
    1569 3lw5:1 (3.3) BS02 CLA ? GO:0009416 ... E1C9L2 19923216
    1570 3lw5:1 (3.3) BS03 CLA ? GO:0009416 ... E1C9L2 19923216
    1571 3lw5:1 (3.3) BS04 CLA ? GO:0009416 ... E1C9L2 19923216
    1572 3lw5:1 (3.3) BS05 CLA ? GO:0009416 ... E1C9L2 19923216
    1573 3lw5:1 (3.3) BS06 CLA ? GO:0009416 ... E1C9L2 19923216
    1574 3lw5:1 (3.3) BS07 CLA ? GO:0009416 ... E1C9L2 19923216
    1575 3lw5:2 (3.3) BS01 CLA ? GO:0009765 ... Q41038 19923216
    1576 3lw5:2 (3.3) BS02 CLA ? GO:0009765 ... Q41038 19923216
    1577 3lw5:2 (3.3) BS03 CLA ? GO:0009765 ... Q41038 19923216
    1578 3lw5:3 (3.3) BS01 CLA ? GO:0009765 ... Q32904 19923216
    1579 3lw5:3 (3.3) BS02 CLA ? GO:0009765 ... Q32904 19923216
    1580 3lw5:3 (3.3) BS03 CLA ? GO:0009765 ... Q32904 19923216
    1581 3lw5:3 (3.3) BS04 CLA ? GO:0009765 ... Q32904 19923216
    1582 3lw5:3 (3.3) BS05 CLA ? GO:0009765 ... Q32904 19923216
    1583 3lw5:3 (3.3) BS06 CLA ? GO:0009765 ... Q32904 19923216
    1584 3lw5:3 (3.3) BS07 CLA ? GO:0009765 ... Q32904 19923216
    1585 3lw5:3 (3.3) BS08 CLA ? GO:0009765 ... Q32904 19923216
    1586 3lw5:4 (3.3) BS01 CLA ? GO:0009765 ... Q9SQL2 19923216
    1587 3lw5:4 (3.3) BS02 CLA ? GO:0009765 ... Q9SQL2 19923216
    1588 3lw5:4 (3.3) BS03 CLA ? GO:0009765 ... Q9SQL2 19923216
    1589 3lw5:4 (3.3) BS04 CLA ? GO:0009765 ... Q9SQL2 19923216
    1590 3lw5:4 (3.3) BS05 CLA ? GO:0009765 ... Q9SQL2 19923216
    1591 3lw5:4 (3.3) BS06 CLA ? GO:0009765 ... Q9SQL2 19923216
    1592 3lw5:4 (3.3) BS07 CLA ? GO:0009765 ... Q9SQL2 19923216
    1593 3lw5:4 (3.3) BS08 CLA ? GO:0009765 ... Q9SQL2 19923216
    1594 3lw5:4 (3.3) BS09 CLA ? GO:0009765 ... Q9SQL2 19923216
    1595 3lw5:4 (3.3) BS10 CLA ? GO:0009765 ... Q9SQL2 19923216
    1596 3lw5:A (3.3) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    1597 3lw5:A (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    1598 3lw5:A (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    1599 3lw5:A (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    1600 3lw5:A (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 19923216
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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