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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1201 3a0b:b (3.7) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    1202 3a0b:b (3.7) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    1203 3a0b:b (3.7) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    1204 3a0b:b (3.7) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    1205 3a0b:b (3.7) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    1206 3a0b:b (3.7) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    1207 3a0b:c (3.7) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    1208 3a0b:c (3.7) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    1209 3a0b:c (3.7) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    1210 3a0b:c (3.7) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    1211 3a0b:c (3.7) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    1212 3a0b:c (3.7) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    1213 3a0b:c (3.7) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    1214 3a0b:c (3.7) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    1215 3a0b:c (3.7) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    1216 3a0b:c (3.7) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    1217 3a0b:c (3.7) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    1218 3a0b:c (3.7) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    1219 3a0b:c (3.7) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    1220 3a0b:d (3.7) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1221 3a0b:d (3.7) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1222 3a0b:d (3.7) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1223 3a0b:d (3.7) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1224 3a0b:d (3.7) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1225 3a0b:h (3.7) BS01 CLA ? GO:0009523 ... P19052 19433803
    1226 3a0b:h (3.7) BS02 CLA ? GO:0009523 ... P19052 19433803
    1227 3a0b:h (3.7) BS03 CLA ? GO:0009523 ... P19052 19433803
    1228 3a0b:i (3.7) BS01 CLA ? GO:0005737 ... P12240 19433803
    1229 3a0b:i (3.7) BS02 CLA ? GO:0005737 ... P12240 19433803
    1230 3a0b:k (3.7) BS02 CLA ? GO:0005737 ... P19054 19433803
    1231 3a0b:l (3.7) BS01 CLA ? GO:0005737 ... P12241 19433803
    1232 3a0b:m (3.7) BS01 CLA ? GO:0005737 ... P12312 19433803
    1233 3a0b:x (3.7) BS01 CLA ? GO:0009523 ... D0VWR4 19433803
    1234 3a0b:z (3.7) BS02 CLA ? GO:0009523 ... D0VWR5 19433803
    1235 3a0h:A (4.0) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1236 3a0h:A (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1237 3a0h:A (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1238 3a0h:A (4.0) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1239 3a0h:A (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1240 3a0h:A (4.0) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1241 3a0h:B (4.0) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    1242 3a0h:B (4.0) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    1243 3a0h:B (4.0) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    1244 3a0h:B (4.0) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    1245 3a0h:B (4.0) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    1246 3a0h:B (4.0) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    1247 3a0h:B (4.0) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    1248 3a0h:B (4.0) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    1249 3a0h:B (4.0) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    1250 3a0h:B (4.0) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    1251 3a0h:B (4.0) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    1252 3a0h:B (4.0) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    1253 3a0h:B (4.0) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    1254 3a0h:B (4.0) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    1255 3a0h:B (4.0) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    1256 3a0h:C (4.0) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    1257 3a0h:C (4.0) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    1258 3a0h:C (4.0) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    1259 3a0h:C (4.0) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    1260 3a0h:C (4.0) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    1261 3a0h:C (4.0) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    1262 3a0h:C (4.0) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    1263 3a0h:C (4.0) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    1264 3a0h:C (4.0) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    1265 3a0h:C (4.0) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    1266 3a0h:C (4.0) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    1267 3a0h:C (4.0) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    1268 3a0h:C (4.0) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    1269 3a0h:D (4.0) BS01 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1270 3a0h:D (4.0) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1271 3a0h:D (4.0) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1272 3a0h:D (4.0) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1273 3a0h:D (4.0) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1274 3a0h:H (4.0) BS01 CLA ? GO:0009523 ... P19052 19433803
    1275 3a0h:H (4.0) BS02 CLA ? GO:0009523 ... P19052 19433803
    1276 3a0h:H (4.0) BS03 CLA ? GO:0009523 ... P19052 19433803
    1277 3a0h:I (4.0) BS01 CLA ? GO:0005737 ... P12240 19433803
    1278 3a0h:K (4.0) BS02 CLA ? GO:0005737 ... P19054 19433803
    1279 3a0h:K (4.0) BS03 CLA ? GO:0005737 ... P19054 19433803
    1280 3a0h:M (4.0) BS01 CLA ? GO:0005737 ... P12312 19433803
    1281 3a0h:a (4.0) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1282 3a0h:a (4.0) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1283 3a0h:a (4.0) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1284 3a0h:a (4.0) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1285 3a0h:a (4.0) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1286 3a0h:a (4.0) BS11 CLA 1.10.3.9 GO:0005506 ... P51765 19433803
    1287 3a0h:b (4.0) BS01 CLA ? GO:0009521 ... D0VWR1 19433803
    1288 3a0h:b (4.0) BS02 CLA ? GO:0009521 ... D0VWR1 19433803
    1289 3a0h:b (4.0) BS03 CLA ? GO:0009521 ... D0VWR1 19433803
    1290 3a0h:b (4.0) BS04 CLA ? GO:0009521 ... D0VWR1 19433803
    1291 3a0h:b (4.0) BS05 CLA ? GO:0009521 ... D0VWR1 19433803
    1292 3a0h:b (4.0) BS06 CLA ? GO:0009521 ... D0VWR1 19433803
    1293 3a0h:b (4.0) BS07 CLA ? GO:0009521 ... D0VWR1 19433803
    1294 3a0h:b (4.0) BS08 CLA ? GO:0009521 ... D0VWR1 19433803
    1295 3a0h:b (4.0) BS09 CLA ? GO:0009521 ... D0VWR1 19433803
    1296 3a0h:b (4.0) BS10 CLA ? GO:0009521 ... D0VWR1 19433803
    1297 3a0h:b (4.0) BS11 CLA ? GO:0009521 ... D0VWR1 19433803
    1298 3a0h:b (4.0) BS12 CLA ? GO:0009521 ... D0VWR1 19433803
    1299 3a0h:b (4.0) BS13 CLA ? GO:0009521 ... D0VWR1 19433803
    1300 3a0h:b (4.0) BS14 CLA ? GO:0009521 ... D0VWR1 19433803
    1301 3a0h:b (4.0) BS15 CLA ? GO:0009521 ... D0VWR1 19433803
    1302 3a0h:c (4.0) BS02 CLA ? GO:0005737 ... D0VWR7 19433803
    1303 3a0h:c (4.0) BS03 CLA ? GO:0005737 ... D0VWR7 19433803
    1304 3a0h:c (4.0) BS04 CLA ? GO:0005737 ... D0VWR7 19433803
    1305 3a0h:c (4.0) BS05 CLA ? GO:0005737 ... D0VWR7 19433803
    1306 3a0h:c (4.0) BS06 CLA ? GO:0005737 ... D0VWR7 19433803
    1307 3a0h:c (4.0) BS07 CLA ? GO:0005737 ... D0VWR7 19433803
    1308 3a0h:c (4.0) BS08 CLA ? GO:0005737 ... D0VWR7 19433803
    1309 3a0h:c (4.0) BS09 CLA ? GO:0005737 ... D0VWR7 19433803
    1310 3a0h:c (4.0) BS10 CLA ? GO:0005737 ... D0VWR7 19433803
    1311 3a0h:c (4.0) BS11 CLA ? GO:0005737 ... D0VWR7 19433803
    1312 3a0h:c (4.0) BS12 CLA ? GO:0005737 ... D0VWR7 19433803
    1313 3a0h:c (4.0) BS13 CLA ? GO:0005737 ... D0VWR7 19433803
    1314 3a0h:c (4.0) BS14 CLA ? GO:0005737 ... D0VWR7 19433803
    1315 3a0h:d (4.0) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1316 3a0h:d (4.0) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1317 3a0h:d (4.0) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1318 3a0h:d (4.0) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1319 3a0h:d (4.0) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 19433803
    1320 3a0h:h (4.0) BS01 CLA ? GO:0009523 ... P19052 19433803
    1321 3a0h:h (4.0) BS02 CLA ? GO:0009523 ... P19052 19433803
    1322 3a0h:h (4.0) BS03 CLA ? GO:0009523 ... P19052 19433803
    1323 3a0h:i (4.0) BS01 CLA ? GO:0005737 ... P12240 19433803
    1324 3a0h:k (4.0) BS02 CLA ? GO:0005737 ... P19054 19433803
    1325 3a0h:k (4.0) BS03 CLA ? GO:0005737 ... P19054 19433803
    1326 3a0h:m (4.0) BS01 CLA ? GO:0005737 ... P12312 19433803
    1327 3iis:M (1.4) BS01 CLA ? GO:0016168 ... P80484 19934052
    1328 3iiu:M (1.45) BS01 CLA ? GO:0016168 ... P80484 19934052
    1329 3jcu:A (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1330 3jcu:A (3.2) BS04 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1331 3jcu:A (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1332 3jcu:A (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1333 3jcu:A (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P69560 27251276
    1334 3jcu:B (3.2) BS02 CLA ? GO:0009507 ... P04160 27251276
    1335 3jcu:B (3.2) BS03 CLA ? GO:0009507 ... P04160 27251276
    1336 3jcu:B (3.2) BS04 CLA ? GO:0009507 ... P04160 27251276
    1337 3jcu:B (3.2) BS05 CLA ? GO:0009507 ... P04160 27251276
    1338 3jcu:B (3.2) BS06 CLA ? GO:0009507 ... P04160 27251276
    1339 3jcu:B (3.2) BS07 CLA ? GO:0009507 ... P04160 27251276
    1340 3jcu:B (3.2) BS08 CLA ? GO:0009507 ... P04160 27251276
    1341 3jcu:B (3.2) BS09 CLA ? GO:0009507 ... P04160 27251276
    1342 3jcu:B (3.2) BS10 CLA ? GO:0009507 ... P04160 27251276
    1343 3jcu:B (3.2) BS11 CLA ? GO:0009507 ... P04160 27251276
    1344 3jcu:B (3.2) BS12 CLA ? GO:0009507 ... P04160 27251276
    1345 3jcu:B (3.2) BS13 CLA ? GO:0009507 ... P04160 27251276
    1346 3jcu:B (3.2) BS14 CLA ? GO:0009507 ... P04160 27251276
    1347 3jcu:B (3.2) BS15 CLA ? GO:0009507 ... P04160 27251276
    1348 3jcu:B (3.2) BS16 CLA ? GO:0009507 ... P04160 27251276
    1349 3jcu:B (3.2) BS17 CLA ? GO:0009507 ... P04160 27251276
    1350 3jcu:B (3.2) BS18 CLA ? GO:0009507 ... P04160 27251276
    1351 3jcu:C (3.2) BS02 CLA ? GO:0005737 ... P06003 27251276
    1352 3jcu:C (3.2) BS03 CLA ? GO:0005737 ... P06003 27251276
    1353 3jcu:C (3.2) BS04 CLA ? GO:0005737 ... P06003 27251276
    1354 3jcu:C (3.2) BS05 CLA ? GO:0005737 ... P06003 27251276
    1355 3jcu:C (3.2) BS06 CLA ? GO:0005737 ... P06003 27251276
    1356 3jcu:C (3.2) BS07 CLA ? GO:0005737 ... P06003 27251276
    1357 3jcu:C (3.2) BS08 CLA ? GO:0005737 ... P06003 27251276
    1358 3jcu:C (3.2) BS09 CLA ? GO:0005737 ... P06003 27251276
    1359 3jcu:C (3.2) BS10 CLA ? GO:0005737 ... P06003 27251276
    1360 3jcu:C (3.2) BS11 CLA ? GO:0005737 ... P06003 27251276
    1361 3jcu:C (3.2) BS12 CLA ? GO:0005737 ... P06003 27251276
    1362 3jcu:C (3.2) BS13 CLA ? GO:0005737 ... P06003 27251276
    1363 3jcu:C (3.2) BS14 CLA ? GO:0005737 ... P06003 27251276
    1364 3jcu:D (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1365 3jcu:D (3.2) BS03 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1366 3jcu:D (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1367 3jcu:D (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1368 3jcu:D (3.2) BS09 CLA 1.10.3.9 GO:0005506 ... P06005 27251276
    1369 3jcu:G (3.2) BS02 CLA ? GO:0009416 ... P12333 27251276
    1370 3jcu:G (3.2) BS03 CLA ? GO:0009416 ... P12333 27251276
    1371 3jcu:G (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1372 3jcu:G (3.2) BS10 CLA ? GO:0009416 ... P12333 27251276
    1373 3jcu:G (3.2) BS11 CLA ? GO:0009416 ... P12333 27251276
    1374 3jcu:G (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1375 3jcu:G (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1376 3jcu:G (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1377 3jcu:H (3.2) BS01 CLA ? GO:0009507 ... P05146 27251276
    1378 3jcu:H (3.2) BS02 CLA ? GO:0009507 ... P05146 27251276
    1379 3jcu:H (3.2) BS03 CLA ? GO:0009507 ... P05146 27251276
    1380 3jcu:H (3.2) BS04 CLA ? GO:0009507 ... P05146 27251276
    1381 3jcu:I (3.2) BS01 CLA ? GO:0005737 ... P62103 27251276
    1382 3jcu:I (3.2) BS02 CLA ? GO:0005737 ... P62103 27251276
    1383 3jcu:K (3.2) BS01 CLA ? GO:0005737 ... P12163 27251276
    1384 3jcu:K (3.2) BS02 CLA ? GO:0005737 ... P12163 27251276
    1385 3jcu:K (3.2) BS03 CLA ? GO:0005737 ... P12163 27251276
    1386 3jcu:N (3.2) BS04 CLA ? GO:0009416 ... P12333 27251276
    1387 3jcu:N (3.2) BS05 CLA ? GO:0009416 ... P12333 27251276
    1388 3jcu:N (3.2) BS06 CLA ? GO:0009416 ... P12333 27251276
    1389 3jcu:N (3.2) BS12 CLA ? GO:0009416 ... P12333 27251276
    1390 3jcu:N (3.2) BS13 CLA ? GO:0009416 ... P12333 27251276
    1391 3jcu:N (3.2) BS14 CLA ? GO:0009416 ... P12333 27251276
    1392 3jcu:N (3.2) BS15 CLA ? GO:0009416 ... P12333 27251276
    1393 3jcu:N (3.2) BS16 CLA ? GO:0009416 ... P12333 27251276
    1394 3jcu:R (3.2) BS01 CLA ? GO:0009416 ... F2Z293 27251276
    1395 3jcu:R (3.2) BS02 CLA ? GO:0009416 ... F2Z293 27251276
    1396 3jcu:R (3.2) BS03 CLA ? GO:0009416 ... F2Z293 27251276
    1397 3jcu:R (3.2) BS04 CLA ? GO:0009416 ... F2Z293 27251276
    1398 3jcu:R (3.2) BS08 CLA ? GO:0009416 ... F2Z293 27251276
    1399 3jcu:R (3.2) BS09 CLA ? GO:0009416 ... F2Z293 27251276
    1400 3jcu:R (3.2) BS10 CLA ? GO:0009416 ... F2Z293 27251276
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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