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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10401 6j3y:13 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10402 6j3y:13 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10403 6j3y:13 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10404 6j3y:13 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10405 6j3y:13 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10406 6j3y:13 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10407 6j3y:13 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10408 6j3y:13 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    10409 6j3y:14 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    10410 6j3y:14 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10411 6j3y:14 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10412 6j3y:14 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10413 6j3y:14 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10414 6j3y:14 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10415 6j3y:14 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10416 6j3y:14 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10417 6j3y:14 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10418 6j3y:14 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    10419 6j3y:14 (3.3) BS13 CLA N/A GO:0009765 ... N/A 31358960
    10420 6j3y:31 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    10421 6j3y:31 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10422 6j3y:31 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    10423 6j3y:31 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10424 6j3y:31 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10425 6j3y:31 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10426 6j3y:31 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10427 6j3y:31 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10428 6j3y:31 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10429 6j3y:31 (3.3) BS15 CLA N/A GO:0009765 ... N/A 31358960
    10430 6j3y:31 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    10431 6j3y:32 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10432 6j3y:32 (3.3) BS03 CLA N/A GO:0009765 ... N/A 31358960
    10433 6j3y:32 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10434 6j3y:32 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10435 6j3y:32 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10436 6j3y:32 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10437 6j3y:32 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10438 6j3y:32 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10439 6j3y:32 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10440 6j3y:32 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10441 6j3y:32 (3.3) BS17 CLA N/A GO:0009765 ... N/A 31358960
    10442 6j3y:32 (3.3) BS19 CLA N/A GO:0009765 ... N/A 31358960
    10443 6j3y:33 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10444 6j3y:33 (3.3) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10445 6j3y:33 (3.3) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10446 6j3y:33 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10447 6j3y:33 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10448 6j3y:33 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10449 6j3y:33 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10450 6j3y:33 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10451 6j3y:33 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10452 6j3y:33 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    10453 6j3y:33 (3.3) BS18 CLA N/A GO:0009765 ... N/A 31358960
    10454 6j3y:34 (3.3) BS01 CLA N/A GO:0009765 ... N/A 31358960
    10455 6j3y:34 (3.3) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10456 6j3y:34 (3.3) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10457 6j3y:34 (3.3) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10458 6j3y:34 (3.3) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10459 6j3y:34 (3.3) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10460 6j3y:34 (3.3) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10461 6j3y:34 (3.3) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10462 6j3y:34 (3.3) BS12 CLA N/A GO:0009765 ... N/A 31358960
    10463 6j3y:34 (3.3) BS13 CLA N/A GO:0009765 ... N/A 31358960
    10464 6j3y:34 (3.3) BS14 CLA N/A GO:0009765 ... N/A 31358960
    10465 6j3y:A (3.3) BS03 CLA N/A GO:0009055 ... N/A 31358960
    10466 6j3y:A (3.3) BS05 CLA N/A GO:0009055 ... N/A 31358960
    10467 6j3y:A (3.3) BS08 CLA N/A GO:0009055 ... N/A 31358960
    10468 6j3y:A (3.3) BS09 CLA N/A GO:0009055 ... N/A 31358960
    10469 6j3y:B (3.3) BS01 CLA N/A GO:0009521 ... N/A 31358960
    10470 6j3y:B (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    10471 6j3y:B (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    10472 6j3y:B (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    10473 6j3y:B (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    10474 6j3y:B (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    10475 6j3y:B (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    10476 6j3y:B (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    10477 6j3y:B (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    10478 6j3y:B (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    10479 6j3y:B (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    10480 6j3y:B (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    10481 6j3y:B (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    10482 6j3y:B (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    10483 6j3y:B (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    10484 6j3y:B (3.3) BS16 CLA N/A GO:0009521 ... N/A 31358960
    10485 6j3y:C (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    10486 6j3y:C (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    10487 6j3y:C (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    10488 6j3y:C (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    10489 6j3y:C (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    10490 6j3y:C (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    10491 6j3y:C (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    10492 6j3y:C (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    10493 6j3y:C (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    10494 6j3y:C (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    10495 6j3y:C (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    10496 6j3y:C (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    10497 6j3y:C (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    10498 6j3y:C (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    10499 6j3y:D (3.3) BS05 CLA N/A GO:0009523 ... N/A 31358960
    10500 6j3y:D (3.3) BS06 CLA N/A GO:0009523 ... N/A 31358960
    10501 6j3y:D (3.3) BS07 CLA N/A GO:0009523 ... N/A 31358960
    10502 6j3y:D (3.3) BS09 CLA N/A GO:0009523 ... N/A 31358960
    10503 6j3y:D (3.3) BS10 CLA N/A GO:0009523 ... N/A 31358960
    10504 6j3y:H (3.3) BS01 CLA ? GO:0009507 ... B7XBY7 31358960
    10505 6j3y:H (3.3) BS02 CLA ? GO:0009507 ... B7XBY7 31358960
    10506 6j3y:I (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10507 6j3y:I (3.3) BS02 CLA N/A GO:0009523 ... N/A 31358960
    10508 6j3y:K (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10509 6j3y:W (3.3) BS01 CLA N/A N/A N/A 31358960
    10510 6j3y:W (3.3) BS02 CLA N/A N/A N/A 31358960
    10511 6j3y:Z (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10512 6j3y:Z (3.3) BS02 CLA N/A GO:0009523 ... N/A 31358960
    10513 6j3y:a (3.3) BS03 CLA N/A GO:0009055 ... N/A 31358960
    10514 6j3y:a (3.3) BS05 CLA N/A GO:0009055 ... N/A 31358960
    10515 6j3y:a (3.3) BS08 CLA N/A GO:0009055 ... N/A 31358960
    10516 6j3y:a (3.3) BS09 CLA N/A GO:0009055 ... N/A 31358960
    10517 6j3y:b (3.3) BS01 CLA N/A GO:0009521 ... N/A 31358960
    10518 6j3y:b (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    10519 6j3y:b (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    10520 6j3y:b (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    10521 6j3y:b (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    10522 6j3y:b (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    10523 6j3y:b (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    10524 6j3y:b (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    10525 6j3y:b (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    10526 6j3y:b (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    10527 6j3y:b (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    10528 6j3y:b (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    10529 6j3y:b (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    10530 6j3y:b (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    10531 6j3y:b (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    10532 6j3y:b (3.3) BS16 CLA N/A GO:0009521 ... N/A 31358960
    10533 6j3y:c (3.3) BS02 CLA N/A GO:0009521 ... N/A 31358960
    10534 6j3y:c (3.3) BS03 CLA N/A GO:0009521 ... N/A 31358960
    10535 6j3y:c (3.3) BS04 CLA N/A GO:0009521 ... N/A 31358960
    10536 6j3y:c (3.3) BS05 CLA N/A GO:0009521 ... N/A 31358960
    10537 6j3y:c (3.3) BS06 CLA N/A GO:0009521 ... N/A 31358960
    10538 6j3y:c (3.3) BS07 CLA N/A GO:0009521 ... N/A 31358960
    10539 6j3y:c (3.3) BS08 CLA N/A GO:0009521 ... N/A 31358960
    10540 6j3y:c (3.3) BS09 CLA N/A GO:0009521 ... N/A 31358960
    10541 6j3y:c (3.3) BS10 CLA N/A GO:0009521 ... N/A 31358960
    10542 6j3y:c (3.3) BS11 CLA N/A GO:0009521 ... N/A 31358960
    10543 6j3y:c (3.3) BS12 CLA N/A GO:0009521 ... N/A 31358960
    10544 6j3y:c (3.3) BS13 CLA N/A GO:0009521 ... N/A 31358960
    10545 6j3y:c (3.3) BS14 CLA N/A GO:0009521 ... N/A 31358960
    10546 6j3y:c (3.3) BS15 CLA N/A GO:0009521 ... N/A 31358960
    10547 6j3y:d (3.3) BS05 CLA N/A GO:0009523 ... N/A 31358960
    10548 6j3y:d (3.3) BS06 CLA N/A GO:0009523 ... N/A 31358960
    10549 6j3y:d (3.3) BS07 CLA N/A GO:0009523 ... N/A 31358960
    10550 6j3y:d (3.3) BS09 CLA N/A GO:0009523 ... N/A 31358960
    10551 6j3y:d (3.3) BS10 CLA N/A GO:0009523 ... N/A 31358960
    10552 6j3y:h (3.3) BS01 CLA ? GO:0009507 ... B7XBY7 31358960
    10553 6j3y:h (3.3) BS02 CLA ? GO:0009507 ... B7XBY7 31358960
    10554 6j3y:i (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10555 6j3y:i (3.3) BS02 CLA N/A GO:0009523 ... N/A 31358960
    10556 6j3y:k (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10557 6j3y:k (3.3) BS02 CLA N/A GO:0009523 ... N/A 31358960
    10558 6j3y:w (3.3) BS01 CLA N/A N/A N/A 31358960
    10559 6j3y:w (3.3) BS02 CLA N/A N/A N/A 31358960
    10560 6j3y:z (3.3) BS01 CLA N/A GO:0009523 ... N/A 31358960
    10561 6j3y:z (3.3) BS02 CLA N/A GO:0009523 ... N/A 31358960
    10562 6j3z:11 (3.6) BS01 CLA N/A GO:0009765 ... N/A 31358960
    10563 6j3z:11 (3.6) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10564 6j3z:11 (3.6) BS03 CLA N/A GO:0009765 ... N/A 31358960
    10565 6j3z:11 (3.6) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10566 6j3z:11 (3.6) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10567 6j3z:11 (3.6) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10568 6j3z:11 (3.6) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10569 6j3z:11 (3.6) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10570 6j3z:11 (3.6) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10571 6j3z:11 (3.6) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10572 6j3z:11 (3.6) BS16 CLA N/A GO:0009765 ... N/A 31358960
    10573 6j3z:11 (3.6) BS18 CLA N/A GO:0009765 ... N/A 31358960
    10574 6j3z:12 (3.6) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10575 6j3z:12 (3.6) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10576 6j3z:12 (3.6) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10577 6j3z:12 (3.6) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10578 6j3z:12 (3.6) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10579 6j3z:12 (3.6) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10580 6j3z:12 (3.6) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10581 6j3z:12 (3.6) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10582 6j3z:12 (3.6) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10583 6j3z:12 (3.6) BS12 CLA N/A GO:0009765 ... N/A 31358960
    10584 6j3z:12 (3.6) BS13 CLA N/A GO:0009765 ... N/A 31358960
    10585 6j3z:13 (3.6) BS03 CLA N/A GO:0009765 ... N/A 31358960
    10586 6j3z:13 (3.6) BS04 CLA N/A GO:0009765 ... N/A 31358960
    10587 6j3z:13 (3.6) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10588 6j3z:13 (3.6) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10589 6j3z:13 (3.6) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10590 6j3z:13 (3.6) BS08 CLA N/A GO:0009765 ... N/A 31358960
    10591 6j3z:13 (3.6) BS09 CLA N/A GO:0009765 ... N/A 31358960
    10592 6j3z:13 (3.6) BS10 CLA N/A GO:0009765 ... N/A 31358960
    10593 6j3z:13 (3.6) BS11 CLA N/A GO:0009765 ... N/A 31358960
    10594 6j3z:13 (3.6) BS17 CLA N/A GO:0009765 ... N/A 31358960
    10595 6j3z:14 (3.6) BS01 CLA N/A GO:0009765 ... N/A 31358960
    10596 6j3z:14 (3.6) BS02 CLA N/A GO:0009765 ... N/A 31358960
    10597 6j3z:14 (3.6) BS05 CLA N/A GO:0009765 ... N/A 31358960
    10598 6j3z:14 (3.6) BS06 CLA N/A GO:0009765 ... N/A 31358960
    10599 6j3z:14 (3.6) BS07 CLA N/A GO:0009765 ... N/A 31358960
    10600 6j3z:14 (3.6) BS08 CLA N/A GO:0009765 ... N/A 31358960
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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