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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 5zji:A (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8602 5zji:A (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8603 5zji:A (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8604 5zji:A (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8605 5zji:A (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8606 5zji:A (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8607 5zji:A (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8608 5zji:A (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8609 5zji:A (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8610 5zji:A (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8611 5zji:A (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8612 5zji:A (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8613 5zji:A (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8614 5zji:A (3.3) BS49 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8615 5zji:A (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... P04966 29880686
    8616 5zji:B (3.3) BS02 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8617 5zji:B (3.3) BS03 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8618 5zji:B (3.3) BS04 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8619 5zji:B (3.3) BS05 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8620 5zji:B (3.3) BS06 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8621 5zji:B (3.3) BS08 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8622 5zji:B (3.3) BS09 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8623 5zji:B (3.3) BS10 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8624 5zji:B (3.3) BS11 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8625 5zji:B (3.3) BS12 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8626 5zji:B (3.3) BS13 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8627 5zji:B (3.3) BS14 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8628 5zji:B (3.3) BS15 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8629 5zji:B (3.3) BS16 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8630 5zji:B (3.3) BS17 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8631 5zji:B (3.3) BS18 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8632 5zji:B (3.3) BS19 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8633 5zji:B (3.3) BS20 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8634 5zji:B (3.3) BS21 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8635 5zji:B (3.3) BS22 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8636 5zji:B (3.3) BS23 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8637 5zji:B (3.3) BS24 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8638 5zji:B (3.3) BS25 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8639 5zji:B (3.3) BS26 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8640 5zji:B (3.3) BS27 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8641 5zji:B (3.3) BS28 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8642 5zji:B (3.3) BS29 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8643 5zji:B (3.3) BS30 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8644 5zji:B (3.3) BS31 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8645 5zji:B (3.3) BS32 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8646 5zji:B (3.3) BS33 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8647 5zji:B (3.3) BS34 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8648 5zji:B (3.3) BS35 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8649 5zji:B (3.3) BS36 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8650 5zji:B (3.3) BS37 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8651 5zji:B (3.3) BS38 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8652 5zji:B (3.3) BS39 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8653 5zji:B (3.3) BS40 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8654 5zji:B (3.3) BS41 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8655 5zji:B (3.3) BS42 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8656 5zji:B (3.3) BS43 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8657 5zji:B (3.3) BS44 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8658 5zji:B (3.3) BS45 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8659 5zji:B (3.3) BS46 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8660 5zji:B (3.3) BS47 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8661 5zji:B (3.3) BS48 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8662 5zji:B (3.3) BS50 CLA 1.97.1.12 GO:0000287 ... A0A059Q6U2 29880686
    8663 5zji:F (3.3) BS01 CLA ? GO:0009507 ... B6SRI3 29880686
    8664 5zji:F (3.3) BS02 CLA ? GO:0009507 ... B6SRI3 29880686
    8665 5zji:F (3.3) BS03 CLA ? GO:0009507 ... B6SRI3 29880686
    8666 5zji:F (3.3) BS04 CLA ? GO:0009507 ... B6SRI3 29880686
    8667 5zji:F (3.3) BS05 CLA ? GO:0009507 ... B6SRI3 29880686
    8668 5zji:F (3.3) BS06 CLA ? GO:0009507 ... B6SRI3 29880686
    8669 5zji:G (3.3) BS01 CLA ? GO:0009507 ... B6U534 29880686
    8670 5zji:G (3.3) BS02 CLA ? GO:0009507 ... B6U534 29880686
    8671 5zji:G (3.3) BS03 CLA ? GO:0009507 ... B6U534 29880686
    8672 5zji:G (3.3) BS04 CLA ? GO:0009507 ... B6U534 29880686
    8673 5zji:G (3.3) BS05 CLA ? GO:0009507 ... B6U534 29880686
    8674 5zji:H (3.3) BS01 CLA ? GO:0009507 ... O65101 29880686
    8675 5zji:H (3.3) BS02 CLA ? GO:0009507 ... O65101 29880686
    8676 5zji:H (3.3) BS03 CLA ? GO:0009507 ... O65101 29880686
    8677 5zji:I (3.3) BS01 CLA ? GO:0009507 ... P30980 29880686
    8678 5zji:I (3.3) BS02 CLA ? GO:0009507 ... P30980 29880686
    8679 5zji:I (3.3) BS03 CLA ? GO:0009507 ... P30980 29880686
    8680 5zji:J (3.3) BS01 CLA ? GO:0009507 ... P62596 29880686
    8681 5zji:J (3.3) BS02 CLA ? GO:0009507 ... P62596 29880686
    8682 5zji:J (3.3) BS03 CLA ? GO:0009507 ... P62596 29880686
    8683 5zji:J (3.3) BS04 CLA ? GO:0009507 ... P62596 29880686
    8684 5zji:J (3.3) BS05 CLA ? GO:0009507 ... P62596 29880686
    8685 5zji:K (3.3) BS01 CLA ? GO:0009507 ... B6TR16 29880686
    8686 5zji:K (3.3) BS02 CLA ? GO:0009507 ... B6TR16 29880686
    8687 5zji:K (3.3) BS03 CLA ? GO:0009507 ... B6TR16 29880686
    8688 5zji:K (3.3) BS04 CLA ? GO:0009507 ... B6TR16 29880686
    8689 5zji:K (3.3) BS05 CLA ? GO:0009507 ... B6TR16 29880686
    8690 5zji:L (3.3) BS01 CLA ? GO:0009522 ... B6STT2 29880686
    8691 5zji:L (3.3) BS02 CLA ? GO:0009522 ... B6STT2 29880686
    8692 5zji:L (3.3) BS03 CLA ? GO:0009522 ... B6STT2 29880686
    8693 5zji:L (3.3) BS04 CLA ? GO:0009522 ... B6STT2 29880686
    8694 5zji:L (3.3) BS05 CLA ? GO:0009522 ... B6STT2 29880686
    8695 5zji:L (3.3) BS06 CLA ? GO:0009522 ... B6STT2 29880686
    8696 5zji:L (3.3) BS07 CLA ? GO:0009522 ... B6STT2 29880686
    8697 5zji:L (3.3) BS08 CLA ? GO:0009522 ... B6STT2 29880686
    8698 5zji:L (3.3) BS09 CLA ? GO:0009522 ... B6STT2 29880686
    8699 5zji:N (3.3) BS01 CLA ? GO:0009507 ... B6TXS5 29880686
    8700 5zji:N (3.3) BS02 CLA ? GO:0009507 ... B6TXS5 29880686
    8701 5zji:O (3.3) BS01 CLA ? GO:0016020 ... B6SQZ7 29880686
    8702 5zji:O (3.3) BS02 CLA ? GO:0016020 ... B6SQZ7 29880686
    8703 5zji:O (3.3) BS03 CLA ? GO:0016020 ... B6SQZ7 29880686
    8704 5zji:O (3.3) BS04 CLA ? GO:0016020 ... B6SQZ7 29880686
    8705 5zji:X (3.3) BS02 CLA ? GO:0009765 ... P12329 29880686
    8706 5zji:X (3.3) BS03 CLA ? GO:0009765 ... P12329 29880686
    8707 5zji:X (3.3) BS09 CLA ? GO:0009765 ... P12329 29880686
    8708 5zji:X (3.3) BS10 CLA ? GO:0009765 ... P12329 29880686
    8709 5zji:X (3.3) BS11 CLA ? GO:0009765 ... P12329 29880686
    8710 5zji:X (3.3) BS12 CLA ? GO:0009765 ... P12329 29880686
    8711 5zji:X (3.3) BS13 CLA ? GO:0009765 ... P12329 29880686
    8712 5zji:Y (3.3) BS02 CLA ? GO:0009765 ... B6SZT9 29880686
    8713 5zji:Y (3.3) BS03 CLA ? GO:0009765 ... B6SZT9 29880686
    8714 5zji:Y (3.3) BS04 CLA ? GO:0009765 ... B6SZT9 29880686
    8715 5zji:Y (3.3) BS10 CLA ? GO:0009765 ... B6SZT9 29880686
    8716 5zji:Y (3.3) BS11 CLA ? GO:0009765 ... B6SZT9 29880686
    8717 5zji:Y (3.3) BS12 CLA ? GO:0009765 ... B6SZT9 29880686
    8718 5zji:Y (3.3) BS13 CLA ? GO:0009765 ... B6SZT9 29880686
    8719 5zji:Y (3.3) BS14 CLA ? GO:0009765 ... B6SZT9 29880686
    8720 5zji:Z (3.3) BS03 CLA ? GO:0009765 ... P12329 29880686
    8721 5zji:Z (3.3) BS04 CLA ? GO:0009765 ... P12329 29880686
    8722 5zji:Z (3.3) BS05 CLA ? GO:0009765 ... P12329 29880686
    8723 5zji:Z (3.3) BS11 CLA ? GO:0009765 ... P12329 29880686
    8724 5zji:Z (3.3) BS12 CLA ? GO:0009765 ... P12329 29880686
    8725 5zji:Z (3.3) BS13 CLA ? GO:0009765 ... P12329 29880686
    8726 5zji:Z (3.3) BS14 CLA ? GO:0009765 ... P12329 29880686
    8727 5zji:Z (3.3) BS15 CLA ? GO:0009765 ... P12329 29880686
    8728 5zzn:A (2.1) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8729 5zzn:A (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8730 5zzn:A (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8731 5zzn:A (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8732 5zzn:B (2.1) BS01 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8733 5zzn:B (2.1) BS02 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8734 5zzn:B (2.1) BS03 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8735 5zzn:B (2.1) BS04 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8736 5zzn:B (2.1) BS05 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8737 5zzn:B (2.1) BS06 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8738 5zzn:B (2.1) BS07 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8739 5zzn:B (2.1) BS08 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8740 5zzn:B (2.1) BS09 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8741 5zzn:B (2.1) BS10 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8742 5zzn:B (2.1) BS11 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8743 5zzn:B (2.1) BS12 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8744 5zzn:B (2.1) BS13 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8745 5zzn:B (2.1) BS14 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8746 5zzn:B (2.1) BS15 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8747 5zzn:B (2.1) BS16 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8748 5zzn:C (2.1) BS02 CLA ? GO:0005737 ... Q8DIF8 30076221
    8749 5zzn:C (2.1) BS03 CLA ? GO:0005737 ... Q8DIF8 30076221
    8750 5zzn:C (2.1) BS04 CLA ? GO:0005737 ... Q8DIF8 30076221
    8751 5zzn:C (2.1) BS05 CLA ? GO:0005737 ... Q8DIF8 30076221
    8752 5zzn:C (2.1) BS06 CLA ? GO:0005737 ... Q8DIF8 30076221
    8753 5zzn:C (2.1) BS07 CLA ? GO:0005737 ... Q8DIF8 30076221
    8754 5zzn:C (2.1) BS08 CLA ? GO:0005737 ... Q8DIF8 30076221
    8755 5zzn:C (2.1) BS09 CLA ? GO:0005737 ... Q8DIF8 30076221
    8756 5zzn:C (2.1) BS10 CLA ? GO:0005737 ... Q8DIF8 30076221
    8757 5zzn:C (2.1) BS11 CLA ? GO:0005737 ... Q8DIF8 30076221
    8758 5zzn:C (2.1) BS12 CLA ? GO:0005737 ... Q8DIF8 30076221
    8759 5zzn:C (2.1) BS13 CLA ? GO:0005737 ... Q8DIF8 30076221
    8760 5zzn:C (2.1) BS14 CLA ? GO:0005737 ... Q8DIF8 30076221
    8761 5zzn:D (2.1) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    8762 5zzn:D (2.1) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    8763 5zzn:D (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    8764 5zzn:D (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    8765 5zzn:D (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    8766 5zzn:H (2.1) BS01 CLA ? GO:0009523 ... Q8DJ43 30076221
    8767 5zzn:H (2.1) BS02 CLA ? GO:0009523 ... Q8DJ43 30076221
    8768 5zzn:H (2.1) BS03 CLA ? GO:0009523 ... Q8DJ43 30076221
    8769 5zzn:I (2.1) BS01 CLA ? GO:0005737 ... Q8DJZ6 30076221
    8770 5zzn:K (2.1) BS02 CLA ? GO:0009523 ... Q9F1K9 30076221
    8771 5zzn:K (2.1) BS03 CLA ? GO:0009523 ... Q9F1K9 30076221
    8772 5zzn:a (2.1) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8773 5zzn:a (2.1) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8774 5zzn:a (2.1) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8775 5zzn:a (2.1) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8776 5zzn:a (2.1) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 30076221
    8777 5zzn:b (2.1) BS01 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8778 5zzn:b (2.1) BS02 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8779 5zzn:b (2.1) BS03 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8780 5zzn:b (2.1) BS04 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8781 5zzn:b (2.1) BS05 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8782 5zzn:b (2.1) BS06 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8783 5zzn:b (2.1) BS07 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8784 5zzn:b (2.1) BS08 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8785 5zzn:b (2.1) BS09 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8786 5zzn:b (2.1) BS10 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8787 5zzn:b (2.1) BS11 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8788 5zzn:b (2.1) BS12 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8789 5zzn:b (2.1) BS13 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8790 5zzn:b (2.1) BS14 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8791 5zzn:b (2.1) BS15 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8792 5zzn:b (2.1) BS16 CLA ? GO:0009521 ... Q8DIQ1 30076221
    8793 5zzn:c (2.1) BS03 CLA ? GO:0005737 ... Q8DIF8 30076221
    8794 5zzn:c (2.1) BS04 CLA ? GO:0005737 ... Q8DIF8 30076221
    8795 5zzn:c (2.1) BS05 CLA ? GO:0005737 ... Q8DIF8 30076221
    8796 5zzn:c (2.1) BS06 CLA ? GO:0005737 ... Q8DIF8 30076221
    8797 5zzn:c (2.1) BS07 CLA ? GO:0005737 ... Q8DIF8 30076221
    8798 5zzn:c (2.1) BS08 CLA ? GO:0005737 ... Q8DIF8 30076221
    8799 5zzn:c (2.1) BS09 CLA ? GO:0005737 ... Q8DIF8 30076221
    8800 5zzn:c (2.1) BS10 CLA ? GO:0005737 ... Q8DIF8 30076221

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218