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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 5xnl:G (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7002 5xnl:G (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7003 5xnl:H (2.7) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    7004 5xnl:H (2.7) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    7005 5xnl:H (2.7) BS03 CLA ? GO:0009507 ... Q9XQR3 28839073
    7006 5xnl:H (2.7) BS04 CLA ? GO:0009507 ... Q9XQR3 28839073
    7007 5xnl:I (2.7) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    7008 5xnl:I (2.7) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    7009 5xnl:K (2.7) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    7010 5xnl:K (2.7) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    7011 5xnl:M (2.7) BS01 CLA ? GO:0005737 ... P69529 28839073
    7012 5xnl:N (2.7) BS01 CLA ? GO:0009765 ... P27490 28839073
    7013 5xnl:N (2.7) BS05 CLA ? GO:0009765 ... P27490 28839073
    7014 5xnl:N (2.7) BS06 CLA ? GO:0009765 ... P27490 28839073
    7015 5xnl:N (2.7) BS07 CLA ? GO:0009765 ... P27490 28839073
    7016 5xnl:N (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7017 5xnl:N (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7018 5xnl:N (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    7019 5xnl:N (2.7) BS16 CLA ? GO:0009765 ... P27490 28839073
    7020 5xnl:N (2.7) BS17 CLA ? GO:0009765 ... P27490 28839073
    7021 5xnl:R (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7022 5xnl:R (2.7) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7023 5xnl:R (2.7) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7024 5xnl:R (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7025 5xnl:R (2.7) BS08 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7026 5xnl:R (2.7) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7027 5xnl:R (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7028 5xnl:R (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7029 5xnl:R (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7030 5xnl:R (2.7) BS14 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7031 5xnl:S (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7032 5xnl:S (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7033 5xnl:S (2.7) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7034 5xnl:S (2.7) BS06 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7035 5xnl:S (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7036 5xnl:S (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7037 5xnl:S (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7038 5xnl:S (2.7) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7039 5xnl:S (2.7) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7040 5xnl:S (2.7) BS15 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7041 5xnl:X (2.7) BS01 CLA ? GO:0009523 ... Q8VYY1 28839073
    7042 5xnl:Y (2.7) BS01 CLA ? GO:0009765 ... P27490 28839073
    7043 5xnl:Y (2.7) BS05 CLA ? GO:0009765 ... P27490 28839073
    7044 5xnl:Y (2.7) BS06 CLA ? GO:0009765 ... P27490 28839073
    7045 5xnl:Y (2.7) BS07 CLA ? GO:0009765 ... P27490 28839073
    7046 5xnl:Y (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7047 5xnl:Y (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7048 5xnl:Y (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    7049 5xnl:Y (2.7) BS16 CLA ? GO:0009765 ... P27490 28839073
    7050 5xnl:Y (2.7) BS17 CLA ? GO:0009765 ... P27490 28839073
    7051 5xnl:Z (2.7) BS01 CLA ? GO:0009507 ... Q32902 28839073
    7052 5xnl:a (2.7) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7053 5xnl:a (2.7) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7054 5xnl:a (2.7) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7055 5xnl:a (2.7) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7056 5xnl:a (2.7) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7057 5xnl:a (2.7) BS11 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    7058 5xnl:b (2.7) BS01 CLA ? GO:0009507 ... Q9XQR6 28839073
    7059 5xnl:b (2.7) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    7060 5xnl:b (2.7) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    7061 5xnl:b (2.7) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    7062 5xnl:b (2.7) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    7063 5xnl:b (2.7) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    7064 5xnl:b (2.7) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    7065 5xnl:b (2.7) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    7066 5xnl:b (2.7) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    7067 5xnl:b (2.7) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    7068 5xnl:b (2.7) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    7069 5xnl:b (2.7) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    7070 5xnl:b (2.7) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    7071 5xnl:b (2.7) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    7072 5xnl:b (2.7) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    7073 5xnl:b (2.7) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    7074 5xnl:b (2.7) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    7075 5xnl:c (2.7) BS02 CLA ? GO:0005737 ... P06004 28839073
    7076 5xnl:c (2.7) BS03 CLA ? GO:0005737 ... P06004 28839073
    7077 5xnl:c (2.7) BS04 CLA ? GO:0005737 ... P06004 28839073
    7078 5xnl:c (2.7) BS05 CLA ? GO:0005737 ... P06004 28839073
    7079 5xnl:c (2.7) BS06 CLA ? GO:0005737 ... P06004 28839073
    7080 5xnl:c (2.7) BS07 CLA ? GO:0005737 ... P06004 28839073
    7081 5xnl:c (2.7) BS08 CLA ? GO:0005737 ... P06004 28839073
    7082 5xnl:c (2.7) BS09 CLA ? GO:0005737 ... P06004 28839073
    7083 5xnl:c (2.7) BS10 CLA ? GO:0005737 ... P06004 28839073
    7084 5xnl:c (2.7) BS11 CLA ? GO:0005737 ... P06004 28839073
    7085 5xnl:c (2.7) BS12 CLA ? GO:0005737 ... P06004 28839073
    7086 5xnl:c (2.7) BS13 CLA ? GO:0005737 ... P06004 28839073
    7087 5xnl:c (2.7) BS14 CLA ? GO:0005737 ... P06004 28839073
    7088 5xnl:d (2.7) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7089 5xnl:d (2.7) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7090 5xnl:d (2.7) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7091 5xnl:d (2.7) BS07 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7092 5xnl:d (2.7) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7093 5xnl:d (2.7) BS10 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    7094 5xnl:g (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    7095 5xnl:g (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    7096 5xnl:g (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    7097 5xnl:g (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    7098 5xnl:g (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    7099 5xnl:g (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073
    7100 5xnl:g (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7101 5xnl:g (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7102 5xnl:h (2.7) BS01 CLA ? GO:0009507 ... Q9XQR3 28839073
    7103 5xnl:h (2.7) BS02 CLA ? GO:0009507 ... Q9XQR3 28839073
    7104 5xnl:h (2.7) BS03 CLA ? GO:0009507 ... Q9XQR3 28839073
    7105 5xnl:h (2.7) BS04 CLA ? GO:0009507 ... Q9XQR3 28839073
    7106 5xnl:i (2.7) BS01 CLA ? GO:0005737 ... D5MAJ9 28839073
    7107 5xnl:i (2.7) BS02 CLA ? GO:0005737 ... D5MAJ9 28839073
    7108 5xnl:k (2.7) BS01 CLA ? GO:0005737 ... D5MAJ8 28839073
    7109 5xnl:k (2.7) BS02 CLA ? GO:0005737 ... D5MAJ8 28839073
    7110 5xnl:m (2.7) BS01 CLA ? GO:0005737 ... P69529 28839073
    7111 5xnl:n (2.7) BS01 CLA ? GO:0009765 ... P27490 28839073
    7112 5xnl:n (2.7) BS05 CLA ? GO:0009765 ... P27490 28839073
    7113 5xnl:n (2.7) BS06 CLA ? GO:0009765 ... P27490 28839073
    7114 5xnl:n (2.7) BS07 CLA ? GO:0009765 ... P27490 28839073
    7115 5xnl:n (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7116 5xnl:n (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7117 5xnl:n (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    7118 5xnl:n (2.7) BS16 CLA ? GO:0009765 ... P27490 28839073
    7119 5xnl:n (2.7) BS17 CLA ? GO:0009765 ... P27490 28839073
    7120 5xnl:r (2.7) BS02 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7121 5xnl:r (2.7) BS03 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7122 5xnl:r (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7123 5xnl:r (2.7) BS05 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7124 5xnl:r (2.7) BS09 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7125 5xnl:r (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7126 5xnl:r (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7127 5xnl:r (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7128 5xnl:r (2.7) BS13 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7129 5xnl:r (2.7) BS15 CLA ? GO:0009416 ... A0A2D0TCJ0 28839073
    7130 5xnl:s (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7131 5xnl:s (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7132 5xnl:s (2.7) BS05 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7133 5xnl:s (2.7) BS06 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7134 5xnl:s (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7135 5xnl:s (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7136 5xnl:s (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7137 5xnl:s (2.7) BS13 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7138 5xnl:s (2.7) BS14 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7139 5xnl:s (2.7) BS15 CLA ? GO:0009416 ... A0A2D0TCJ1 28839073
    7140 5xnl:x (2.7) BS01 CLA ? GO:0009523 ... Q8VYY1 28839073
    7141 5xnl:y (2.7) BS01 CLA ? GO:0009765 ... P27490 28839073
    7142 5xnl:y (2.7) BS05 CLA ? GO:0009765 ... P27490 28839073
    7143 5xnl:y (2.7) BS06 CLA ? GO:0009765 ... P27490 28839073
    7144 5xnl:y (2.7) BS07 CLA ? GO:0009765 ... P27490 28839073
    7145 5xnl:y (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    7146 5xnl:y (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    7147 5xnl:y (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    7148 5xnl:y (2.7) BS16 CLA ? GO:0009765 ... P27490 28839073
    7149 5xnl:y (2.7) BS17 CLA ? GO:0009765 ... P27490 28839073
    7150 5xnl:z (2.7) BS01 CLA ? GO:0009507 ... Q32902 28839073
    7151 5xnm:1 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7152 5xnm:1 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7153 5xnm:1 (3.2) BS09 CLA ? GO:0009765 ... P27490 28839073
    7154 5xnm:1 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7155 5xnm:1 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7156 5xnm:1 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7157 5xnm:1 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7158 5xnm:2 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7159 5xnm:2 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7160 5xnm:2 (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    7161 5xnm:2 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7162 5xnm:2 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7163 5xnm:2 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7164 5xnm:2 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7165 5xnm:2 (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7166 5xnm:3 (3.2) BS04 CLA ? GO:0009416 ... Q04918 28839073
    7167 5xnm:3 (3.2) BS05 CLA ? GO:0009416 ... Q04918 28839073
    7168 5xnm:3 (3.2) BS06 CLA ? GO:0009416 ... Q04918 28839073
    7169 5xnm:3 (3.2) BS12 CLA ? GO:0009416 ... Q04918 28839073
    7170 5xnm:3 (3.2) BS13 CLA ? GO:0009416 ... Q04918 28839073
    7171 5xnm:3 (3.2) BS14 CLA ? GO:0009416 ... Q04918 28839073
    7172 5xnm:3 (3.2) BS15 CLA ? GO:0009416 ... Q04918 28839073
    7173 5xnm:3 (3.2) BS16 CLA ? GO:0009416 ... Q04918 28839073
    7174 5xnm:4 (3.2) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7175 5xnm:4 (3.2) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7176 5xnm:4 (3.2) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7177 5xnm:4 (3.2) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7178 5xnm:4 (3.2) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7179 5xnm:4 (3.2) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7180 5xnm:4 (3.2) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7181 5xnm:4 (3.2) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    7182 5xnm:5 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7183 5xnm:5 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7184 5xnm:5 (3.2) BS09 CLA ? GO:0009765 ... P27490 28839073
    7185 5xnm:5 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7186 5xnm:5 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7187 5xnm:5 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7188 5xnm:5 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7189 5xnm:6 (3.2) BS02 CLA ? GO:0009765 ... P27490 28839073
    7190 5xnm:6 (3.2) BS03 CLA ? GO:0009765 ... P27490 28839073
    7191 5xnm:6 (3.2) BS04 CLA ? GO:0009765 ... P27490 28839073
    7192 5xnm:6 (3.2) BS10 CLA ? GO:0009765 ... P27490 28839073
    7193 5xnm:6 (3.2) BS11 CLA ? GO:0009765 ... P27490 28839073
    7194 5xnm:6 (3.2) BS12 CLA ? GO:0009765 ... P27490 28839073
    7195 5xnm:6 (3.2) BS13 CLA ? GO:0009765 ... P27490 28839073
    7196 5xnm:6 (3.2) BS14 CLA ? GO:0009765 ... P27490 28839073
    7197 5xnm:7 (3.2) BS04 CLA ? GO:0009416 ... Q04918 28839073
    7198 5xnm:7 (3.2) BS05 CLA ? GO:0009416 ... Q04918 28839073
    7199 5xnm:7 (3.2) BS06 CLA ? GO:0009416 ... Q04918 28839073
    7200 5xnm:7 (3.2) BS12 CLA ? GO:0009416 ... Q04918 28839073

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218