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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6801 5ws6:B (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    6802 5ws6:B (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    6803 5ws6:B (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    6804 5ws6:B (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    6805 5ws6:B (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    6806 5ws6:B (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    6807 5ws6:B (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    6808 5ws6:B (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    6809 5ws6:B (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    6810 5ws6:B (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    6811 5ws6:B (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    6812 5ws6:B (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    6813 5ws6:B (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    6814 5ws6:B (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    6815 5ws6:B (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    6816 5ws6:C (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    6817 5ws6:C (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    6818 5ws6:C (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    6819 5ws6:C (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    6820 5ws6:C (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    6821 5ws6:C (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    6822 5ws6:C (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    6823 5ws6:C (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    6824 5ws6:C (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    6825 5ws6:C (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    6826 5ws6:C (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    6827 5ws6:C (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    6828 5ws6:C (2.35) BS15 CLA ? GO:0005737 ... D0VWR7 28219079
    6829 5ws6:D (2.35) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6830 5ws6:D (2.35) BS04 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6831 5ws6:D (2.35) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6832 5ws6:D (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6833 5ws6:D (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6834 5ws6:H (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    6835 5ws6:H (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    6836 5ws6:H (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    6837 5ws6:H (2.35) BS04 CLA ? GO:0009523 ... P19052 28219079
    6838 5ws6:I (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    6839 5ws6:K (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    6840 5ws6:K (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    6841 5ws6:Z (2.35) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    6842 5ws6:a (2.35) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6843 5ws6:a (2.35) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6844 5ws6:a (2.35) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6845 5ws6:a (2.35) BS10 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    6846 5ws6:b (2.35) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    6847 5ws6:b (2.35) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    6848 5ws6:b (2.35) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    6849 5ws6:b (2.35) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    6850 5ws6:b (2.35) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    6851 5ws6:b (2.35) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    6852 5ws6:b (2.35) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    6853 5ws6:b (2.35) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    6854 5ws6:b (2.35) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    6855 5ws6:b (2.35) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    6856 5ws6:b (2.35) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    6857 5ws6:b (2.35) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    6858 5ws6:b (2.35) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    6859 5ws6:b (2.35) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    6860 5ws6:b (2.35) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    6861 5ws6:b (2.35) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    6862 5ws6:c (2.35) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    6863 5ws6:c (2.35) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    6864 5ws6:c (2.35) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    6865 5ws6:c (2.35) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    6866 5ws6:c (2.35) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    6867 5ws6:c (2.35) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    6868 5ws6:c (2.35) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    6869 5ws6:c (2.35) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    6870 5ws6:c (2.35) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    6871 5ws6:c (2.35) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    6872 5ws6:c (2.35) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    6873 5ws6:c (2.35) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    6874 5ws6:c (2.35) BS15 CLA ? GO:0005737 ... D0VWR7 28219079
    6875 5ws6:d (2.35) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6876 5ws6:d (2.35) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6877 5ws6:d (2.35) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6878 5ws6:d (2.35) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6879 5ws6:d (2.35) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    6880 5ws6:h (2.35) BS01 CLA ? GO:0009523 ... P19052 28219079
    6881 5ws6:h (2.35) BS02 CLA ? GO:0009523 ... P19052 28219079
    6882 5ws6:h (2.35) BS03 CLA ? GO:0009523 ... P19052 28219079
    6883 5ws6:i (2.35) BS01 CLA ? GO:0005737 ... P12240 28219079
    6884 5ws6:k (2.35) BS02 CLA ? GO:0005737 ... P19054 28219079
    6885 5ws6:k (2.35) BS03 CLA ? GO:0005737 ... P19054 28219079
    6886 5ws6:z (2.35) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    6887 5xnl:1 (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    6888 5xnl:1 (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    6889 5xnl:1 (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    6890 5xnl:1 (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    6891 5xnl:1 (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    6892 5xnl:1 (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073
    6893 5xnl:1 (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    6894 5xnl:1 (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    6895 5xnl:1 (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    6896 5xnl:2 (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    6897 5xnl:2 (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    6898 5xnl:2 (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    6899 5xnl:2 (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    6900 5xnl:2 (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    6901 5xnl:2 (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073
    6902 5xnl:2 (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    6903 5xnl:2 (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    6904 5xnl:3 (2.7) BS04 CLA ? GO:0009416 ... Q04918 28839073
    6905 5xnl:3 (2.7) BS05 CLA ? GO:0009416 ... Q04918 28839073
    6906 5xnl:3 (2.7) BS06 CLA ? GO:0009416 ... Q04918 28839073
    6907 5xnl:3 (2.7) BS12 CLA ? GO:0009416 ... Q04918 28839073
    6908 5xnl:3 (2.7) BS13 CLA ? GO:0009416 ... Q04918 28839073
    6909 5xnl:3 (2.7) BS14 CLA ? GO:0009416 ... Q04918 28839073
    6910 5xnl:3 (2.7) BS15 CLA ? GO:0009416 ... Q04918 28839073
    6911 5xnl:3 (2.7) BS16 CLA ? GO:0009416 ... Q04918 28839073
    6912 5xnl:4 (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6913 5xnl:4 (2.7) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6914 5xnl:4 (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6915 5xnl:4 (2.7) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6916 5xnl:4 (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6917 5xnl:4 (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6918 5xnl:4 (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6919 5xnl:4 (2.7) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6920 5xnl:5 (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    6921 5xnl:5 (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    6922 5xnl:5 (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    6923 5xnl:5 (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    6924 5xnl:5 (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    6925 5xnl:5 (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073
    6926 5xnl:5 (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    6927 5xnl:5 (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    6928 5xnl:5 (2.7) BS15 CLA ? GO:0009765 ... P27490 28839073
    6929 5xnl:6 (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    6930 5xnl:6 (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    6931 5xnl:6 (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    6932 5xnl:6 (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    6933 5xnl:6 (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    6934 5xnl:6 (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073
    6935 5xnl:6 (2.7) BS13 CLA ? GO:0009765 ... P27490 28839073
    6936 5xnl:6 (2.7) BS14 CLA ? GO:0009765 ... P27490 28839073
    6937 5xnl:7 (2.7) BS04 CLA ? GO:0009416 ... Q04918 28839073
    6938 5xnl:7 (2.7) BS05 CLA ? GO:0009416 ... Q04918 28839073
    6939 5xnl:7 (2.7) BS06 CLA ? GO:0009416 ... Q04918 28839073
    6940 5xnl:7 (2.7) BS12 CLA ? GO:0009416 ... Q04918 28839073
    6941 5xnl:7 (2.7) BS13 CLA ? GO:0009416 ... Q04918 28839073
    6942 5xnl:7 (2.7) BS14 CLA ? GO:0009416 ... Q04918 28839073
    6943 5xnl:7 (2.7) BS15 CLA ? GO:0009416 ... Q04918 28839073
    6944 5xnl:7 (2.7) BS16 CLA ? GO:0009416 ... Q04918 28839073
    6945 5xnl:8 (2.7) BS01 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6946 5xnl:8 (2.7) BS03 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6947 5xnl:8 (2.7) BS04 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6948 5xnl:8 (2.7) BS05 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6949 5xnl:8 (2.7) BS10 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6950 5xnl:8 (2.7) BS11 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6951 5xnl:8 (2.7) BS12 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6952 5xnl:8 (2.7) BS13 CLA ? GO:0009416 ... A0A2D0TCJ3 28839073
    6953 5xnl:A (2.7) BS03 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6954 5xnl:A (2.7) BS04 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6955 5xnl:A (2.7) BS05 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6956 5xnl:A (2.7) BS08 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6957 5xnl:A (2.7) BS09 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6958 5xnl:A (2.7) BS11 CLA 1.10.3.9 GO:0005506 ... P06585 28839073
    6959 5xnl:B (2.7) BS01 CLA ? GO:0009507 ... Q9XQR6 28839073
    6960 5xnl:B (2.7) BS02 CLA ? GO:0009507 ... Q9XQR6 28839073
    6961 5xnl:B (2.7) BS03 CLA ? GO:0009507 ... Q9XQR6 28839073
    6962 5xnl:B (2.7) BS04 CLA ? GO:0009507 ... Q9XQR6 28839073
    6963 5xnl:B (2.7) BS05 CLA ? GO:0009507 ... Q9XQR6 28839073
    6964 5xnl:B (2.7) BS06 CLA ? GO:0009507 ... Q9XQR6 28839073
    6965 5xnl:B (2.7) BS07 CLA ? GO:0009507 ... Q9XQR6 28839073
    6966 5xnl:B (2.7) BS08 CLA ? GO:0009507 ... Q9XQR6 28839073
    6967 5xnl:B (2.7) BS09 CLA ? GO:0009507 ... Q9XQR6 28839073
    6968 5xnl:B (2.7) BS10 CLA ? GO:0009507 ... Q9XQR6 28839073
    6969 5xnl:B (2.7) BS11 CLA ? GO:0009507 ... Q9XQR6 28839073
    6970 5xnl:B (2.7) BS12 CLA ? GO:0009507 ... Q9XQR6 28839073
    6971 5xnl:B (2.7) BS13 CLA ? GO:0009507 ... Q9XQR6 28839073
    6972 5xnl:B (2.7) BS14 CLA ? GO:0009507 ... Q9XQR6 28839073
    6973 5xnl:B (2.7) BS15 CLA ? GO:0009507 ... Q9XQR6 28839073
    6974 5xnl:B (2.7) BS16 CLA ? GO:0009507 ... Q9XQR6 28839073
    6975 5xnl:B (2.7) BS17 CLA ? GO:0009507 ... Q9XQR6 28839073
    6976 5xnl:C (2.7) BS02 CLA ? GO:0005737 ... P06004 28839073
    6977 5xnl:C (2.7) BS03 CLA ? GO:0005737 ... P06004 28839073
    6978 5xnl:C (2.7) BS04 CLA ? GO:0005737 ... P06004 28839073
    6979 5xnl:C (2.7) BS05 CLA ? GO:0005737 ... P06004 28839073
    6980 5xnl:C (2.7) BS06 CLA ? GO:0005737 ... P06004 28839073
    6981 5xnl:C (2.7) BS07 CLA ? GO:0005737 ... P06004 28839073
    6982 5xnl:C (2.7) BS08 CLA ? GO:0005737 ... P06004 28839073
    6983 5xnl:C (2.7) BS09 CLA ? GO:0005737 ... P06004 28839073
    6984 5xnl:C (2.7) BS10 CLA ? GO:0005737 ... P06004 28839073
    6985 5xnl:C (2.7) BS11 CLA ? GO:0005737 ... P06004 28839073
    6986 5xnl:C (2.7) BS12 CLA ? GO:0005737 ... P06004 28839073
    6987 5xnl:C (2.7) BS13 CLA ? GO:0005737 ... P06004 28839073
    6988 5xnl:C (2.7) BS14 CLA ? GO:0005737 ... P06004 28839073
    6989 5xnl:D (2.7) BS02 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6990 5xnl:D (2.7) BS03 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6991 5xnl:D (2.7) BS06 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6992 5xnl:D (2.7) BS07 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6993 5xnl:D (2.7) BS09 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6994 5xnl:D (2.7) BS10 CLA 1.10.3.9 GO:0005506 ... P06006 28839073
    6995 5xnl:G (2.7) BS02 CLA ? GO:0009765 ... P27490 28839073
    6996 5xnl:G (2.7) BS03 CLA ? GO:0009765 ... P27490 28839073
    6997 5xnl:G (2.7) BS04 CLA ? GO:0009765 ... P27490 28839073
    6998 5xnl:G (2.7) BS10 CLA ? GO:0009765 ... P27490 28839073
    6999 5xnl:G (2.7) BS11 CLA ? GO:0009765 ... P27490 28839073
    7000 5xnl:G (2.7) BS12 CLA ? GO:0009765 ... P27490 28839073

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218