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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 1w5c:H (3.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 N/A
    402 1w5c:H (3.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 N/A
    403 1w5c:H (3.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 N/A
    404 1w5c:H (3.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 N/A
    405 1w5c:H (3.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 N/A
    406 1w5c:H (3.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 N/A
    407 1w5c:H (3.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 N/A
    408 1w5c:H (3.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 N/A
    409 1w5c:H (3.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 N/A
    410 1w5c:H (3.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 N/A
    411 1w5c:H (3.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 N/A
    412 1w5c:H (3.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 N/A
    413 1w5c:I (3.2) BS01 CLA ? GO:0005737 ... Q8DIF8 N/A
    414 1w5c:I (3.2) BS02 CLA ? GO:0005737 ... Q8DIF8 N/A
    415 1w5c:I (3.2) BS03 CLA ? GO:0005737 ... Q8DIF8 N/A
    416 1w5c:I (3.2) BS04 CLA ? GO:0005737 ... Q8DIF8 N/A
    417 1w5c:I (3.2) BS05 CLA ? GO:0005737 ... Q8DIF8 N/A
    418 1w5c:I (3.2) BS06 CLA ? GO:0005737 ... Q8DIF8 N/A
    419 1w5c:I (3.2) BS07 CLA ? GO:0005737 ... Q8DIF8 N/A
    420 1w5c:I (3.2) BS08 CLA ? GO:0005737 ... Q8DIF8 N/A
    421 1w5c:I (3.2) BS09 CLA ? GO:0005737 ... Q8DIF8 N/A
    422 1w5c:I (3.2) BS10 CLA ? GO:0005737 ... Q8DIF8 N/A
    423 1w5c:I (3.2) BS11 CLA ? GO:0005737 ... Q8DIF8 N/A
    424 1w5c:I (3.2) BS12 CLA ? GO:0005737 ... Q8DIF8 N/A
    425 1w5c:I (3.2) BS13 CLA ? GO:0005737 ... Q8DIF8 N/A
    426 1w5c:J (3.2) BS01 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    427 1w5c:J (3.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    428 1w5c:J (3.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    429 1w5c:J (3.2) BS06 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    430 1w5c:J (3.2) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 N/A
    431 2axt:A (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    432 2axt:A (3.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    433 2axt:A (3.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    434 2axt:A (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    435 2axt:A (3.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    436 2axt:A (3.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    437 2axt:B (3.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 16355230
    438 2axt:B (3.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 16355230
    439 2axt:B (3.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 16355230
    440 2axt:B (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    441 2axt:B (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    442 2axt:B (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    443 2axt:B (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    444 2axt:B (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    445 2axt:B (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    446 2axt:B (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    447 2axt:B (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    448 2axt:B (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    449 2axt:B (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    450 2axt:B (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    451 2axt:B (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    452 2axt:B (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    453 2axt:C (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    454 2axt:C (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    455 2axt:C (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    456 2axt:C (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    457 2axt:C (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    458 2axt:C (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    459 2axt:C (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    460 2axt:C (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    461 2axt:C (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    462 2axt:C (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    463 2axt:C (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    464 2axt:C (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    465 2axt:C (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    466 2axt:D (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    467 2axt:D (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    468 2axt:D (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    469 2axt:D (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    470 2axt:H (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    471 2axt:H (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    472 2axt:H (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    473 2axt:H (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    474 2axt:I (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    475 2axt:K (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    476 2axt:K (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    477 2axt:X (3.0) BS01 CLA N/A N/A N/A 16355230
    478 2axt:Z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    479 2axt:a (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    480 2axt:a (3.0) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    481 2axt:a (3.0) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    482 2axt:a (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    483 2axt:a (3.0) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    484 2axt:a (3.0) BS11 CLA 1.10.3.9 GO:0005506 ... P0A444 16355230
    485 2axt:b (3.0) BS01 CLA ? GO:0009521 ... Q8DIQ1 16355230
    486 2axt:b (3.0) BS02 CLA ? GO:0009521 ... Q8DIQ1 16355230
    487 2axt:b (3.0) BS03 CLA ? GO:0009521 ... Q8DIQ1 16355230
    488 2axt:b (3.0) BS04 CLA ? GO:0009521 ... Q8DIQ1 16355230
    489 2axt:b (3.0) BS05 CLA ? GO:0009521 ... Q8DIQ1 16355230
    490 2axt:b (3.0) BS06 CLA ? GO:0009521 ... Q8DIQ1 16355230
    491 2axt:b (3.0) BS07 CLA ? GO:0009521 ... Q8DIQ1 16355230
    492 2axt:b (3.0) BS08 CLA ? GO:0009521 ... Q8DIQ1 16355230
    493 2axt:b (3.0) BS09 CLA ? GO:0009521 ... Q8DIQ1 16355230
    494 2axt:b (3.0) BS10 CLA ? GO:0009521 ... Q8DIQ1 16355230
    495 2axt:b (3.0) BS11 CLA ? GO:0009521 ... Q8DIQ1 16355230
    496 2axt:b (3.0) BS12 CLA ? GO:0009521 ... Q8DIQ1 16355230
    497 2axt:b (3.0) BS13 CLA ? GO:0009521 ... Q8DIQ1 16355230
    498 2axt:b (3.0) BS14 CLA ? GO:0009521 ... Q8DIQ1 16355230
    499 2axt:b (3.0) BS15 CLA ? GO:0009521 ... Q8DIQ1 16355230
    500 2axt:b (3.0) BS16 CLA ? GO:0009521 ... Q8DIQ1 16355230
    501 2axt:c (3.0) BS02 CLA ? GO:0005737 ... Q8DIF8 16355230
    502 2axt:c (3.0) BS03 CLA ? GO:0005737 ... Q8DIF8 16355230
    503 2axt:c (3.0) BS04 CLA ? GO:0005737 ... Q8DIF8 16355230
    504 2axt:c (3.0) BS05 CLA ? GO:0005737 ... Q8DIF8 16355230
    505 2axt:c (3.0) BS06 CLA ? GO:0005737 ... Q8DIF8 16355230
    506 2axt:c (3.0) BS07 CLA ? GO:0005737 ... Q8DIF8 16355230
    507 2axt:c (3.0) BS08 CLA ? GO:0005737 ... Q8DIF8 16355230
    508 2axt:c (3.0) BS09 CLA ? GO:0005737 ... Q8DIF8 16355230
    509 2axt:c (3.0) BS10 CLA ? GO:0005737 ... Q8DIF8 16355230
    510 2axt:c (3.0) BS11 CLA ? GO:0005737 ... Q8DIF8 16355230
    511 2axt:c (3.0) BS12 CLA ? GO:0005737 ... Q8DIF8 16355230
    512 2axt:c (3.0) BS13 CLA ? GO:0005737 ... Q8DIF8 16355230
    513 2axt:c (3.0) BS14 CLA ? GO:0005737 ... Q8DIF8 16355230
    514 2axt:d (3.0) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    515 2axt:d (3.0) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    516 2axt:d (3.0) BS07 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    517 2axt:d (3.0) BS08 CLA 1.10.3.9 GO:0005506 ... Q8CM25 16355230
    518 2axt:h (3.0) BS01 CLA ? GO:0009523 ... Q8DJ43 16355230
    519 2axt:h (3.0) BS02 CLA ? GO:0009523 ... Q8DJ43 16355230
    520 2axt:h (3.0) BS03 CLA ? GO:0009523 ... Q8DJ43 16355230
    521 2axt:h (3.0) BS04 CLA ? GO:0009523 ... Q8DJ43 16355230
    522 2axt:i (3.0) BS01 CLA ? GO:0005737 ... Q8DJZ6 16355230
    523 2axt:k (3.0) BS01 CLA ? GO:0009523 ... Q9F1K9 16355230
    524 2axt:k (3.0) BS02 CLA ? GO:0009523 ... Q9F1K9 16355230
    525 2axt:z (3.0) BS01 CLA ? GO:0009523 ... Q8DHJ2 16355230
    526 2bhw:A (2.5) BS04 CLA ? GO:0009765 ... P07371 15719016
    527 2bhw:A (2.5) BS05 CLA ? GO:0009765 ... P07371 15719016
    528 2bhw:A (2.5) BS06 CLA ? GO:0009765 ... P07371 15719016
    529 2bhw:A (2.5) BS07 CLA ? GO:0009765 ... P07371 15719016
    530 2bhw:A (2.5) BS08 CLA ? GO:0009765 ... P07371 15719016
    531 2bhw:A (2.5) BS09 CLA ? GO:0009765 ... P07371 15719016
    532 2bhw:A (2.5) BS10 CLA ? GO:0009765 ... P07371 15719016
    533 2bhw:A (2.5) BS11 CLA ? GO:0009765 ... P07371 15719016
    534 2bhw:B (2.5) BS06 CLA ? GO:0009765 ... P07371 15719016
    535 2bhw:B (2.5) BS07 CLA ? GO:0009765 ... P07371 15719016
    536 2bhw:B (2.5) BS08 CLA ? GO:0009765 ... P07371 15719016
    537 2bhw:B (2.5) BS09 CLA ? GO:0009765 ... P07371 15719016
    538 2bhw:B (2.5) BS10 CLA ? GO:0009765 ... P07371 15719016
    539 2bhw:B (2.5) BS11 CLA ? GO:0009765 ... P07371 15719016
    540 2bhw:B (2.5) BS12 CLA ? GO:0009765 ... P07371 15719016
    541 2bhw:B (2.5) BS13 CLA ? GO:0009765 ... P07371 15719016
    542 2bhw:C (2.5) BS05 CLA ? GO:0009765 ... P07371 15719016
    543 2bhw:C (2.5) BS06 CLA ? GO:0009765 ... P07371 15719016
    544 2bhw:C (2.5) BS07 CLA ? GO:0009765 ... P07371 15719016
    545 2bhw:C (2.5) BS08 CLA ? GO:0009765 ... P07371 15719016
    546 2bhw:C (2.5) BS09 CLA ? GO:0009765 ... P07371 15719016
    547 2bhw:C (2.5) BS10 CLA ? GO:0009765 ... P07371 15719016
    548 2bhw:C (2.5) BS11 CLA ? GO:0009765 ... P07371 15719016
    549 2bhw:C (2.5) BS12 CLA ? GO:0009765 ... P07371 15719016
    550 2c9e:A (2.1) BS01 CLA ? GO:0016168 ... O76183 19371099
    551 2c9e:A (2.1) BS02 CLA ? GO:0016168 ... O76183 19371099
    552 2d2c:B (3.8) BS04 CLA ? GO:0009055 ... P83792 16371475
    553 2d2c:N (3.8) BS04 CLA ? GO:0009055 ... P83791 16371475
    554 2d2c:O (3.8) BS04 CLA ? GO:0009055 ... P83792 16371475
    555 2dre:A (2.0) BS01 CLA ? GO:0004866 ... O04797 17170107
    556 2dre:A (2.0) BS02 CLA ? GO:0004866 ... O04797 17170107
    557 2dre:A (2.0) BS03 CLA ? GO:0004866 ... O04797 17170107
    558 2dre:B (2.0) BS01 CLA ? GO:0004866 ... O04797 17170107
    559 2dre:B (2.0) BS02 CLA ? GO:0004866 ... O04797 17170107
    560 2dre:B (2.0) BS03 CLA ? GO:0004866 ... O04797 17170107
    561 2dre:C (2.0) BS01 CLA ? GO:0004866 ... O04797 17170107
    562 2dre:C (2.0) BS02 CLA ? GO:0004866 ... O04797 17170107
    563 2dre:C (2.0) BS03 CLA ? GO:0004866 ... O04797 17170107
    564 2dre:D (2.0) BS01 CLA ? GO:0004866 ... O04797 17170107
    565 2dre:D (2.0) BS02 CLA ? GO:0004866 ... O04797 17170107
    566 2dre:D (2.0) BS03 CLA ? GO:0004866 ... O04797 17170107
    567 2e74:B (3.0) BS03 CLA ? GO:0009055 ... P83792 17498743
    568 2e75:A (3.55) BS05 CLA ? GO:0009055 ... P83791 17498743
    569 2e75:B (3.55) BS04 CLA ? GO:0009055 ... P83792 17498743
    570 2e76:B (3.41) BS03 CLA ? GO:0009055 ... P83792 17498743
    571 2o01:1 (3.4) BS01 CLA ? GO:0009765 ... Q01667 17476261
    572 2o01:1 (3.4) BS02 CLA ? GO:0009765 ... Q01667 17476261
    573 2o01:1 (3.4) BS03 CLA ? GO:0009765 ... Q01667 17476261
    574 2o01:1 (3.4) BS04 CLA ? GO:0009765 ... Q01667 17476261
    575 2o01:1 (3.4) BS05 CLA ? GO:0009765 ... Q01667 17476261
    576 2o01:1 (3.4) BS06 CLA ? GO:0009765 ... Q01667 17476261
    577 2o01:2 (3.4) BS01 CLA ? GO:0009765 ... Q41038 17476261
    578 2o01:2 (3.4) BS02 CLA ? GO:0009765 ... Q41038 17476261
    579 2o01:2 (3.4) BS03 CLA ? GO:0009765 ... Q41038 17476261
    580 2o01:2 (3.4) BS04 CLA ? GO:0009765 ... Q41038 17476261
    581 2o01:2 (3.4) BS05 CLA ? GO:0009765 ... Q41038 17476261
    582 2o01:2 (3.4) BS06 CLA ? GO:0009765 ... Q41038 17476261
    583 2o01:3 (3.4) BS01 CLA ? GO:0009765 ... Q9SY97 17476261
    584 2o01:3 (3.4) BS02 CLA ? GO:0009765 ... Q9SY97 17476261
    585 2o01:3 (3.4) BS03 CLA ? GO:0009765 ... Q9SY97 17476261
    586 2o01:3 (3.4) BS04 CLA ? GO:0009765 ... Q9SY97 17476261
    587 2o01:3 (3.4) BS05 CLA ? GO:0009765 ... Q9SY97 17476261
    588 2o01:3 (3.4) BS06 CLA ? GO:0009765 ... Q9SY97 17476261
    589 2o01:4 (3.4) BS01 CLA ? GO:0009765 ... Q9SQL2 17476261
    590 2o01:4 (3.4) BS02 CLA ? GO:0009765 ... Q9SQL2 17476261
    591 2o01:4 (3.4) BS03 CLA ? GO:0009765 ... Q9SQL2 17476261
    592 2o01:4 (3.4) BS04 CLA ? GO:0009765 ... Q9SQL2 17476261
    593 2o01:4 (3.4) BS05 CLA ? GO:0009765 ... Q9SQL2 17476261
    594 2o01:4 (3.4) BS06 CLA ? GO:0009765 ... Q9SQL2 17476261
    595 2o01:4 (3.4) BS07 CLA ? GO:0009765 ... Q9SQL2 17476261
    596 2o01:A (3.4) BS01 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    597 2o01:A (3.4) BS02 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    598 2o01:A (3.4) BS03 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    599 2o01:A (3.4) BS04 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    600 2o01:A (3.4) BS05 CLA 1.97.1.12 GO:0000287 ... P05310 17476261
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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