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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

TM-score TM-align US-align MM-align RNA-align NW-align LS-align EDTSurf MVP MVP-Fit SPICKER HAAD PSSpred 3DRobot MR-REX I-TASSER-MR SVMSEQ NeBcon ResPRE TripletRes DeepPotential WDL-RF ATPbind DockRMSD DeepMSA FASPR EM-Refiner GPU-I-TASSER

BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 5gth:B (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    5202 5gth:B (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    5203 5gth:B (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    5204 5gth:C (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    5205 5gth:C (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    5206 5gth:C (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    5207 5gth:C (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    5208 5gth:C (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    5209 5gth:C (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    5210 5gth:C (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    5211 5gth:C (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    5212 5gth:C (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    5213 5gth:C (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    5214 5gth:C (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    5215 5gth:C (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    5216 5gth:C (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    5217 5gth:D (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5218 5gth:D (2.5) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5219 5gth:D (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5220 5gth:D (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5221 5gth:D (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5222 5gth:H (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    5223 5gth:H (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    5224 5gth:H (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    5225 5gth:H (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    5226 5gth:I (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    5227 5gth:K (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    5228 5gth:K (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    5229 5gth:Z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    5230 5gth:a (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5231 5gth:a (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5232 5gth:a (2.5) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5233 5gth:a (2.5) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5234 5gth:b (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    5235 5gth:b (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    5236 5gth:b (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    5237 5gth:b (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    5238 5gth:b (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    5239 5gth:b (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    5240 5gth:b (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    5241 5gth:b (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    5242 5gth:b (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    5243 5gth:b (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    5244 5gth:b (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    5245 5gth:b (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    5246 5gth:b (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    5247 5gth:b (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    5248 5gth:b (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    5249 5gth:b (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    5250 5gth:c (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    5251 5gth:c (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    5252 5gth:c (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    5253 5gth:c (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    5254 5gth:c (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    5255 5gth:c (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    5256 5gth:c (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    5257 5gth:c (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    5258 5gth:c (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    5259 5gth:c (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    5260 5gth:c (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    5261 5gth:c (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    5262 5gth:c (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    5263 5gth:d (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5264 5gth:d (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5265 5gth:d (2.5) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5266 5gth:d (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5267 5gth:d (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5268 5gth:h (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    5269 5gth:h (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    5270 5gth:h (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    5271 5gth:h (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    5272 5gth:i (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    5273 5gth:k (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    5274 5gth:k (2.5) BS03 CLA ? GO:0005737 ... P19054 28219079
    5275 5gth:z (2.5) BS02 CLA ? GO:0009523 ... D0VWR5 28219079
    5276 5gti:A (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5277 5gti:A (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5278 5gti:A (2.5) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5279 5gti:A (2.5) BS08 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5280 5gti:B (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    5281 5gti:B (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    5282 5gti:B (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    5283 5gti:B (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    5284 5gti:B (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    5285 5gti:B (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    5286 5gti:B (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    5287 5gti:B (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    5288 5gti:B (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    5289 5gti:B (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    5290 5gti:B (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    5291 5gti:B (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    5292 5gti:B (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    5293 5gti:B (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    5294 5gti:B (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    5295 5gti:B (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    5296 5gti:C (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    5297 5gti:C (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    5298 5gti:C (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    5299 5gti:C (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    5300 5gti:C (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    5301 5gti:C (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    5302 5gti:C (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    5303 5gti:C (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    5304 5gti:C (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    5305 5gti:C (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    5306 5gti:C (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    5307 5gti:C (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    5308 5gti:C (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    5309 5gti:D (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5310 5gti:D (2.5) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5311 5gti:D (2.5) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5312 5gti:D (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5313 5gti:D (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5314 5gti:H (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    5315 5gti:H (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    5316 5gti:H (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    5317 5gti:H (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    5318 5gti:I (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    5319 5gti:K (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    5320 5gti:a (2.5) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5321 5gti:a (2.5) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5322 5gti:a (2.5) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5323 5gti:a (2.5) BS07 CLA 1.10.3.9 GO:0005506 ... P51765 28219079
    5324 5gti:b (2.5) BS01 CLA ? GO:0009521 ... D0VWR1 28219079
    5325 5gti:b (2.5) BS02 CLA ? GO:0009521 ... D0VWR1 28219079
    5326 5gti:b (2.5) BS03 CLA ? GO:0009521 ... D0VWR1 28219079
    5327 5gti:b (2.5) BS04 CLA ? GO:0009521 ... D0VWR1 28219079
    5328 5gti:b (2.5) BS05 CLA ? GO:0009521 ... D0VWR1 28219079
    5329 5gti:b (2.5) BS06 CLA ? GO:0009521 ... D0VWR1 28219079
    5330 5gti:b (2.5) BS07 CLA ? GO:0009521 ... D0VWR1 28219079
    5331 5gti:b (2.5) BS08 CLA ? GO:0009521 ... D0VWR1 28219079
    5332 5gti:b (2.5) BS09 CLA ? GO:0009521 ... D0VWR1 28219079
    5333 5gti:b (2.5) BS10 CLA ? GO:0009521 ... D0VWR1 28219079
    5334 5gti:b (2.5) BS11 CLA ? GO:0009521 ... D0VWR1 28219079
    5335 5gti:b (2.5) BS12 CLA ? GO:0009521 ... D0VWR1 28219079
    5336 5gti:b (2.5) BS13 CLA ? GO:0009521 ... D0VWR1 28219079
    5337 5gti:b (2.5) BS14 CLA ? GO:0009521 ... D0VWR1 28219079
    5338 5gti:b (2.5) BS15 CLA ? GO:0009521 ... D0VWR1 28219079
    5339 5gti:b (2.5) BS16 CLA ? GO:0009521 ... D0VWR1 28219079
    5340 5gti:c (2.5) BS02 CLA ? GO:0005737 ... D0VWR7 28219079
    5341 5gti:c (2.5) BS03 CLA ? GO:0005737 ... D0VWR7 28219079
    5342 5gti:c (2.5) BS04 CLA ? GO:0005737 ... D0VWR7 28219079
    5343 5gti:c (2.5) BS05 CLA ? GO:0005737 ... D0VWR7 28219079
    5344 5gti:c (2.5) BS06 CLA ? GO:0005737 ... D0VWR7 28219079
    5345 5gti:c (2.5) BS07 CLA ? GO:0005737 ... D0VWR7 28219079
    5346 5gti:c (2.5) BS08 CLA ? GO:0005737 ... D0VWR7 28219079
    5347 5gti:c (2.5) BS09 CLA ? GO:0005737 ... D0VWR7 28219079
    5348 5gti:c (2.5) BS10 CLA ? GO:0005737 ... D0VWR7 28219079
    5349 5gti:c (2.5) BS11 CLA ? GO:0005737 ... D0VWR7 28219079
    5350 5gti:c (2.5) BS12 CLA ? GO:0005737 ... D0VWR7 28219079
    5351 5gti:c (2.5) BS13 CLA ? GO:0005737 ... D0VWR7 28219079
    5352 5gti:c (2.5) BS14 CLA ? GO:0005737 ... D0VWR7 28219079
    5353 5gti:d (2.5) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5354 5gti:d (2.5) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5355 5gti:d (2.5) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5356 5gti:d (2.5) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5357 5gti:d (2.5) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    5358 5gti:h (2.5) BS01 CLA ? GO:0009523 ... P19052 28219079
    5359 5gti:h (2.5) BS02 CLA ? GO:0009523 ... P19052 28219079
    5360 5gti:h (2.5) BS03 CLA ? GO:0009523 ... P19052 28219079
    5361 5gti:h (2.5) BS04 CLA ? GO:0009523 ... P19052 28219079
    5362 5gti:i (2.5) BS01 CLA ? GO:0005737 ... P12240 28219079
    5363 5gti:k (2.5) BS02 CLA ? GO:0005737 ... P19054 28219079
    5364 5h2f:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P0A444 28272640
    5365 5h2f:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P0A444 28272640
    5366 5h2f:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P0A444 28272640
    5367 5h2f:A (2.2) BS08 CLA 1.10.3.9 GO:0005506 ... P0A444 28272640
    5368 5h2f:A (2.2) BS09 CLA 1.10.3.9 GO:0005506 ... P0A444 28272640
    5369 5h2f:B (2.2) BS01 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5370 5h2f:B (2.2) BS02 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5371 5h2f:B (2.2) BS03 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5372 5h2f:B (2.2) BS04 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5373 5h2f:B (2.2) BS05 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5374 5h2f:B (2.2) BS06 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5375 5h2f:B (2.2) BS07 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5376 5h2f:B (2.2) BS08 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5377 5h2f:B (2.2) BS09 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5378 5h2f:B (2.2) BS10 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5379 5h2f:B (2.2) BS11 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5380 5h2f:B (2.2) BS12 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5381 5h2f:B (2.2) BS13 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5382 5h2f:B (2.2) BS14 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5383 5h2f:B (2.2) BS15 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5384 5h2f:B (2.2) BS16 CLA ? GO:0009521 ... Q8DIQ1 28272640
    5385 5h2f:C (2.2) BS02 CLA ? GO:0005737 ... Q8DIF8 28272640
    5386 5h2f:C (2.2) BS03 CLA ? GO:0005737 ... Q8DIF8 28272640
    5387 5h2f:C (2.2) BS04 CLA ? GO:0005737 ... Q8DIF8 28272640
    5388 5h2f:C (2.2) BS05 CLA ? GO:0005737 ... Q8DIF8 28272640
    5389 5h2f:C (2.2) BS06 CLA ? GO:0005737 ... Q8DIF8 28272640
    5390 5h2f:C (2.2) BS07 CLA ? GO:0005737 ... Q8DIF8 28272640
    5391 5h2f:C (2.2) BS08 CLA ? GO:0005737 ... Q8DIF8 28272640
    5392 5h2f:C (2.2) BS09 CLA ? GO:0005737 ... Q8DIF8 28272640
    5393 5h2f:C (2.2) BS10 CLA ? GO:0005737 ... Q8DIF8 28272640
    5394 5h2f:C (2.2) BS11 CLA ? GO:0005737 ... Q8DIF8 28272640
    5395 5h2f:C (2.2) BS12 CLA ? GO:0005737 ... Q8DIF8 28272640
    5396 5h2f:C (2.2) BS13 CLA ? GO:0005737 ... Q8DIF8 28272640
    5397 5h2f:C (2.2) BS14 CLA ? GO:0005737 ... Q8DIF8 28272640
    5398 5h2f:D (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28272640
    5399 5h2f:D (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28272640
    5400 5h2f:D (2.2) BS05 CLA 1.10.3.9 GO:0005506 ... Q8CM25 28272640

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218