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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46601 8wb4:P (2.47) BS09 CLA N/A N/A N/A 38806516
    46602 8wb4:S (2.47) BS02 CLA N/A N/A N/A 38806516
    46603 8wb4:S (2.47) BS03 CLA N/A N/A N/A 38806516
    46604 8wb4:S (2.47) BS04 CLA N/A N/A N/A 38806516
    46605 8wb4:S (2.47) BS05 CLA N/A N/A N/A 38806516
    46606 8wb4:S (2.47) BS06 CLA N/A N/A N/A 38806516
    46607 8wb4:S (2.47) BS07 CLA N/A N/A N/A 38806516
    46608 8wb4:X (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    46609 8wb4:a (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46610 8wb4:a (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46611 8wb4:a (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46612 8wb4:a (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46613 8wb4:a (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46614 8wb4:a (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46615 8wb4:b (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46616 8wb4:b (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46617 8wb4:b (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46618 8wb4:b (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46619 8wb4:b (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46620 8wb4:b (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46621 8wb4:b (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46622 8wb4:b (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46623 8wb4:b (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46624 8wb4:b (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46625 8wb4:b (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46626 8wb4:b (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46627 8wb4:b (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46628 8wb4:b (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46629 8wb4:b (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46630 8wb4:b (2.47) BS17 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46631 8wb4:c (2.47) BS01 CLA ? GO:0005737 ... A0A222AI36 38806516
    46632 8wb4:c (2.47) BS02 CLA ? GO:0005737 ... A0A222AI36 38806516
    46633 8wb4:c (2.47) BS03 CLA ? GO:0005737 ... A0A222AI36 38806516
    46634 8wb4:c (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    46635 8wb4:c (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    46636 8wb4:c (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    46637 8wb4:c (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    46638 8wb4:c (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    46639 8wb4:c (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    46640 8wb4:c (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    46641 8wb4:c (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    46642 8wb4:c (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    46643 8wb4:c (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    46644 8wb4:d (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46645 8wb4:d (2.47) BS02 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46646 8wb4:d (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46647 8wb4:d (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46648 8wb4:d (2.47) BS08 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46649 8wb4:g (2.47) BS01 CLA N/A N/A N/A 38806516
    46650 8wb4:h (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46651 8wb4:h (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46652 8wb4:h (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46653 8wb4:i (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    46654 8wb4:i (2.47) BS03 CLA ? GO:0005737 ... A0A222AI80 38806516
    46655 8wb4:k (2.47) BS01 CLA ? GO:0005737 ... A0A222AIA0 38806516
    46656 8wb4:k (2.47) BS02 CLA ? GO:0005737 ... A0A222AIA0 38806516
    46657 8wb4:p (2.47) BS01 CLA N/A N/A N/A 38806516
    46658 8wb4:p (2.47) BS03 CLA N/A N/A N/A 38806516
    46659 8wb4:p (2.47) BS05 CLA N/A N/A N/A 38806516
    46660 8wb4:p (2.47) BS06 CLA N/A N/A N/A 38806516
    46661 8wb4:p (2.47) BS07 CLA N/A N/A N/A 38806516
    46662 8wb4:p (2.47) BS08 CLA N/A N/A N/A 38806516
    46663 8wb4:p (2.47) BS09 CLA N/A N/A N/A 38806516
    46664 8wb4:p (2.47) BS10 CLA N/A N/A N/A 38806516
    46665 8wb4:p (2.47) BS11 CLA N/A N/A N/A 38806516
    46666 8wb4:p (2.47) BS12 CLA N/A N/A N/A 38806516
    46667 8wb4:p (2.47) BS13 CLA N/A N/A N/A 38806516
    46668 8wb4:p (2.47) BS15 CLA N/A N/A N/A 38806516
    46669 8wb4:p (2.47) BS16 CLA N/A N/A N/A 38806516
    46670 8wb4:p (2.47) BS21 CLA N/A N/A N/A 38806516
    46671 8wb4:s (2.47) BS02 CLA N/A N/A N/A 38806516
    46672 8wb4:s (2.47) BS03 CLA N/A N/A N/A 38806516
    46673 8wb4:s (2.47) BS04 CLA N/A N/A N/A 38806516
    46674 8wb4:s (2.47) BS05 CLA N/A N/A N/A 38806516
    46675 8wb4:s (2.47) BS06 CLA N/A N/A N/A 38806516
    46676 8wb4:s (2.47) BS07 CLA N/A N/A N/A 38806516
    46677 8wb4:x (2.47) BS01 CLA ? GO:0009523 ... A0A222AI61 38806516
    46678 8wck:1 (2.71) BS07 CLA N/A N/A A0A679BXP6 39030906
    46679 8wck:1 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    46680 8wck:1 (2.71) BS12 CLA N/A N/A A0A679BXP6 39030906
    46681 8wck:1 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    46682 8wck:1 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    46683 8wck:1 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    46684 8wck:1 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    46685 8wck:2 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    46686 8wck:2 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    46687 8wck:2 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    46688 8wck:2 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    46689 8wck:2 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    46690 8wck:2 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    46691 8wck:2 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    46692 8wck:3 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    46693 8wck:3 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    46694 8wck:3 (2.71) BS09 CLA N/A N/A A0A679BXP6 39030906
    46695 8wck:3 (2.71) BS11 CLA N/A N/A A0A679BXP6 39030906
    46696 8wck:3 (2.71) BS14 CLA N/A N/A A0A679BXP6 39030906
    46697 8wck:3 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    46698 8wck:3 (2.71) BS17 CLA N/A N/A A0A679BXP6 39030906
    46699 8wck:4 (2.71) BS01 CLA N/A N/A A0A679BXP6 39030906
    46700 8wck:4 (2.71) BS02 CLA N/A N/A A0A679BXP6 39030906
    46701 8wck:4 (2.71) BS08 CLA N/A N/A A0A679BXP6 39030906
    46702 8wck:4 (2.71) BS10 CLA N/A N/A A0A679BXP6 39030906
    46703 8wck:4 (2.71) BS13 CLA N/A N/A A0A679BXP6 39030906
    46704 8wck:4 (2.71) BS15 CLA N/A N/A A0A679BXP6 39030906
    46705 8wck:4 (2.71) BS16 CLA N/A N/A A0A679BXP6 39030906
    46706 8wcl:5 (2.65) BS06 CLA N/A N/A N/A 39030906
    46707 8wcl:5 (2.65) BS07 CLA N/A N/A N/A 39030906
    46708 8wcl:5 (2.65) BS09 CLA N/A N/A N/A 39030906
    46709 8wcl:5 (2.65) BS12 CLA N/A N/A N/A 39030906
    46710 8wcl:5 (2.65) BS14 CLA N/A N/A N/A 39030906
    46711 8wcl:5 (2.65) BS15 CLA N/A N/A N/A 39030906
    46712 8wcl:5 (2.65) BS18 CLA N/A N/A N/A 39030906
    46713 8wcl:6 (2.65) BS05 CLA N/A N/A N/A 39030906
    46714 8wcl:6 (2.65) BS06 CLA N/A N/A N/A 39030906
    46715 8wcl:6 (2.65) BS08 CLA N/A N/A N/A 39030906
    46716 8wcl:6 (2.65) BS11 CLA N/A N/A N/A 39030906
    46717 8wcl:6 (2.65) BS13 CLA N/A N/A N/A 39030906
    46718 8wcl:6 (2.65) BS14 CLA N/A N/A N/A 39030906
    46719 8wcl:7 (2.65) BS01 CLA N/A N/A N/A 39030906
    46720 8wcl:7 (2.65) BS08 CLA N/A N/A N/A 39030906
    46721 8wcl:7 (2.65) BS09 CLA N/A N/A N/A 39030906
    46722 8wcl:7 (2.65) BS11 CLA N/A N/A N/A 39030906
    46723 8wcl:7 (2.65) BS14 CLA N/A N/A N/A 39030906
    46724 8wcl:7 (2.65) BS16 CLA N/A N/A N/A 39030906
    46725 8wcl:8 (2.65) BS01 CLA N/A N/A N/A 39030906
    46726 8wcl:8 (2.65) BS08 CLA N/A N/A N/A 39030906
    46727 8wcl:8 (2.65) BS10 CLA N/A N/A N/A 39030906
    46728 8wcl:8 (2.65) BS13 CLA N/A N/A N/A 39030906
    46729 8wcl:8 (2.65) BS15 CLA N/A N/A N/A 39030906
    46730 8wcl:8 (2.65) BS16 CLA N/A N/A N/A 39030906
    46731 8wcl:8 (2.65) BS17 CLA N/A N/A N/A 39030906
    46732 8wcl:9 (2.65) BS07 CLA N/A N/A N/A 39030906
    46733 8wcl:9 (2.65) BS08 CLA N/A N/A N/A 39030906
    46734 8wcl:9 (2.65) BS10 CLA N/A N/A N/A 39030906
    46735 8wcl:9 (2.65) BS11 CLA N/A N/A N/A 39030906
    46736 8wcl:9 (2.65) BS12 CLA N/A N/A N/A 39030906
    46737 8wcl:9 (2.65) BS13 CLA N/A N/A N/A 39030906
    46738 8wcl:9 (2.65) BS15 CLA N/A N/A N/A 39030906
    46739 8wcl:9 (2.65) BS16 CLA N/A N/A N/A 39030906
    46740 8wey:1 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    46741 8wey:1 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    46742 8wey:1 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    46743 8wey:1 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    46744 8wey:1 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    46745 8wey:1 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    46746 8wey:1 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    46747 8wey:1 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    46748 8wey:1 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    46749 8wey:1 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    46750 8wey:1 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    46751 8wey:2 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    46752 8wey:2 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    46753 8wey:2 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    46754 8wey:2 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    46755 8wey:2 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    46756 8wey:2 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    46757 8wey:2 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    46758 8wey:2 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    46759 8wey:2 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    46760 8wey:2 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    46761 8wey:2 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    46762 8wey:2 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    46763 8wey:2 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    46764 8wey:3 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    46765 8wey:3 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    46766 8wey:3 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    46767 8wey:3 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    46768 8wey:3 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    46769 8wey:3 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    46770 8wey:3 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    46771 8wey:3 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    46772 8wey:3 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    46773 8wey:3 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    46774 8wey:3 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    46775 8wey:4 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    46776 8wey:4 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    46777 8wey:4 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    46778 8wey:4 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    46779 8wey:4 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    46780 8wey:4 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    46781 8wey:4 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    46782 8wey:5 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    46783 8wey:5 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    46784 8wey:5 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    46785 8wey:5 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    46786 8wey:5 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    46787 8wey:5 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    46788 8wey:5 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    46789 8wey:5 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    46790 8wey:5 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    46791 8wey:5 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    46792 8wey:5 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    46793 8wey:5 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    46794 8wey:5 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    46795 8wey:5 (1.92) BS15 CLA N/A GO:0009765 ... N/A 38442179
    46796 8wey:A (1.92) BS02 CLA N/A GO:0009579 ... N/A 38442179
    46797 8wey:A (1.92) BS03 CLA N/A GO:0009579 ... N/A 38442179
    46798 8wey:A (1.92) BS04 CLA N/A GO:0009579 ... N/A 38442179
    46799 8wey:A (1.92) BS05 CLA N/A GO:0009579 ... N/A 38442179
    46800 8wey:A (1.92) BS06 CLA N/A GO:0009579 ... N/A 38442179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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