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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46401 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    46402 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    46403 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    46404 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    46405 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    46406 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    46407 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    46408 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    46409 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    46410 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    46411 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    46412 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    46413 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    46414 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    46415 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    46416 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    46417 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    46418 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    46419 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    46420 8w4p:4 (3.48) BS03 CLA N/A N/A N/A 38071196
    46421 8w4p:4 (3.48) BS04 CLA N/A N/A N/A 38071196
    46422 8w4p:4 (3.48) BS05 CLA N/A N/A N/A 38071196
    46423 8w4p:4 (3.48) BS06 CLA N/A N/A N/A 38071196
    46424 8w4p:4 (3.48) BS07 CLA N/A N/A N/A 38071196
    46425 8w4p:4 (3.48) BS08 CLA N/A N/A N/A 38071196
    46426 8w4p:4 (3.48) BS09 CLA N/A N/A N/A 38071196
    46427 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    46428 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    46429 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    46430 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    46431 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    46432 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    46433 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    46434 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    46435 8wb4:0 (2.47) BS01 CLA N/A N/A N/A 38806516
    46436 8wb4:0 (2.47) BS02 CLA N/A N/A N/A 38806516
    46437 8wb4:0 (2.47) BS03 CLA N/A N/A N/A 38806516
    46438 8wb4:0 (2.47) BS04 CLA N/A N/A N/A 38806516
    46439 8wb4:0 (2.47) BS05 CLA N/A N/A N/A 38806516
    46440 8wb4:0 (2.47) BS06 CLA N/A N/A N/A 38806516
    46441 8wb4:0 (2.47) BS07 CLA N/A N/A N/A 38806516
    46442 8wb4:0 (2.47) BS08 CLA N/A N/A N/A 38806516
    46443 8wb4:0 (2.47) BS09 CLA N/A N/A N/A 38806516
    46444 8wb4:0 (2.47) BS11 CLA N/A N/A N/A 38806516
    46445 8wb4:0 (2.47) BS12 CLA N/A N/A N/A 38806516
    46446 8wb4:0 (2.47) BS13 CLA N/A N/A N/A 38806516
    46447 8wb4:1 (2.47) BS01 CLA N/A N/A N/A 38806516
    46448 8wb4:1 (2.47) BS02 CLA N/A N/A N/A 38806516
    46449 8wb4:1 (2.47) BS03 CLA N/A N/A N/A 38806516
    46450 8wb4:1 (2.47) BS04 CLA N/A N/A N/A 38806516
    46451 8wb4:1 (2.47) BS05 CLA N/A N/A N/A 38806516
    46452 8wb4:1 (2.47) BS06 CLA N/A N/A N/A 38806516
    46453 8wb4:1 (2.47) BS07 CLA N/A N/A N/A 38806516
    46454 8wb4:1 (2.47) BS08 CLA N/A N/A N/A 38806516
    46455 8wb4:1 (2.47) BS09 CLA N/A N/A N/A 38806516
    46456 8wb4:1 (2.47) BS11 CLA N/A N/A N/A 38806516
    46457 8wb4:1 (2.47) BS12 CLA N/A N/A N/A 38806516
    46458 8wb4:1 (2.47) BS13 CLA N/A N/A N/A 38806516
    46459 8wb4:2 (2.47) BS02 CLA N/A N/A N/A 38806516
    46460 8wb4:2 (2.47) BS03 CLA N/A N/A N/A 38806516
    46461 8wb4:2 (2.47) BS04 CLA N/A N/A N/A 38806516
    46462 8wb4:2 (2.47) BS05 CLA N/A N/A N/A 38806516
    46463 8wb4:2 (2.47) BS06 CLA N/A N/A N/A 38806516
    46464 8wb4:2 (2.47) BS07 CLA N/A N/A N/A 38806516
    46465 8wb4:2 (2.47) BS08 CLA N/A N/A N/A 38806516
    46466 8wb4:2 (2.47) BS09 CLA N/A N/A N/A 38806516
    46467 8wb4:2 (2.47) BS11 CLA N/A N/A N/A 38806516
    46468 8wb4:2 (2.47) BS12 CLA N/A N/A N/A 38806516
    46469 8wb4:3 (2.47) BS01 CLA N/A N/A N/A 38806516
    46470 8wb4:3 (2.47) BS03 CLA N/A N/A N/A 38806516
    46471 8wb4:3 (2.47) BS04 CLA N/A N/A N/A 38806516
    46472 8wb4:3 (2.47) BS05 CLA N/A N/A N/A 38806516
    46473 8wb4:3 (2.47) BS06 CLA N/A N/A N/A 38806516
    46474 8wb4:3 (2.47) BS07 CLA N/A N/A N/A 38806516
    46475 8wb4:3 (2.47) BS08 CLA N/A N/A N/A 38806516
    46476 8wb4:3 (2.47) BS09 CLA N/A N/A N/A 38806516
    46477 8wb4:3 (2.47) BS10 CLA N/A N/A N/A 38806516
    46478 8wb4:3 (2.47) BS11 CLA N/A N/A N/A 38806516
    46479 8wb4:3 (2.47) BS12 CLA N/A N/A N/A 38806516
    46480 8wb4:4 (2.47) BS01 CLA N/A N/A N/A 38806516
    46481 8wb4:4 (2.47) BS02 CLA N/A N/A N/A 38806516
    46482 8wb4:4 (2.47) BS03 CLA N/A N/A N/A 38806516
    46483 8wb4:4 (2.47) BS04 CLA N/A N/A N/A 38806516
    46484 8wb4:4 (2.47) BS05 CLA N/A N/A N/A 38806516
    46485 8wb4:4 (2.47) BS06 CLA N/A N/A N/A 38806516
    46486 8wb4:4 (2.47) BS07 CLA N/A N/A N/A 38806516
    46487 8wb4:4 (2.47) BS08 CLA N/A N/A N/A 38806516
    46488 8wb4:4 (2.47) BS09 CLA N/A N/A N/A 38806516
    46489 8wb4:4 (2.47) BS11 CLA N/A N/A N/A 38806516
    46490 8wb4:4 (2.47) BS12 CLA N/A N/A N/A 38806516
    46491 8wb4:4 (2.47) BS13 CLA N/A N/A N/A 38806516
    46492 8wb4:5 (2.47) BS01 CLA N/A N/A N/A 38806516
    46493 8wb4:5 (2.47) BS03 CLA N/A N/A N/A 38806516
    46494 8wb4:5 (2.47) BS04 CLA N/A N/A N/A 38806516
    46495 8wb4:5 (2.47) BS05 CLA N/A N/A N/A 38806516
    46496 8wb4:5 (2.47) BS06 CLA N/A N/A N/A 38806516
    46497 8wb4:5 (2.47) BS07 CLA N/A N/A N/A 38806516
    46498 8wb4:5 (2.47) BS08 CLA N/A N/A N/A 38806516
    46499 8wb4:5 (2.47) BS09 CLA N/A N/A N/A 38806516
    46500 8wb4:5 (2.47) BS10 CLA N/A N/A N/A 38806516
    46501 8wb4:5 (2.47) BS11 CLA N/A N/A N/A 38806516
    46502 8wb4:5 (2.47) BS13 CLA N/A N/A N/A 38806516
    46503 8wb4:5 (2.47) BS14 CLA N/A N/A N/A 38806516
    46504 8wb4:5 (2.47) BS20 CLA N/A N/A N/A 38806516
    46505 8wb4:6 (2.47) BS02 CLA N/A N/A N/A 38806516
    46506 8wb4:6 (2.47) BS03 CLA N/A N/A N/A 38806516
    46507 8wb4:6 (2.47) BS04 CLA N/A N/A N/A 38806516
    46508 8wb4:6 (2.47) BS05 CLA N/A N/A N/A 38806516
    46509 8wb4:6 (2.47) BS07 CLA N/A N/A N/A 38806516
    46510 8wb4:6 (2.47) BS08 CLA N/A N/A N/A 38806516
    46511 8wb4:6 (2.47) BS09 CLA N/A N/A N/A 38806516
    46512 8wb4:6 (2.47) BS10 CLA N/A N/A N/A 38806516
    46513 8wb4:7 (2.47) BS01 CLA N/A N/A N/A 38806516
    46514 8wb4:7 (2.47) BS02 CLA N/A N/A N/A 38806516
    46515 8wb4:7 (2.47) BS03 CLA N/A N/A N/A 38806516
    46516 8wb4:7 (2.47) BS04 CLA N/A N/A N/A 38806516
    46517 8wb4:7 (2.47) BS05 CLA N/A N/A N/A 38806516
    46518 8wb4:7 (2.47) BS06 CLA N/A N/A N/A 38806516
    46519 8wb4:7 (2.47) BS07 CLA N/A N/A N/A 38806516
    46520 8wb4:7 (2.47) BS08 CLA N/A N/A N/A 38806516
    46521 8wb4:7 (2.47) BS09 CLA N/A N/A N/A 38806516
    46522 8wb4:7 (2.47) BS11 CLA N/A N/A N/A 38806516
    46523 8wb4:7 (2.47) BS12 CLA N/A N/A N/A 38806516
    46524 8wb4:7 (2.47) BS13 CLA N/A N/A N/A 38806516
    46525 8wb4:8 (2.47) BS02 CLA N/A N/A N/A 38806516
    46526 8wb4:8 (2.47) BS03 CLA N/A N/A N/A 38806516
    46527 8wb4:8 (2.47) BS04 CLA N/A N/A N/A 38806516
    46528 8wb4:8 (2.47) BS05 CLA N/A N/A N/A 38806516
    46529 8wb4:8 (2.47) BS06 CLA N/A N/A N/A 38806516
    46530 8wb4:8 (2.47) BS07 CLA N/A N/A N/A 38806516
    46531 8wb4:8 (2.47) BS08 CLA N/A N/A N/A 38806516
    46532 8wb4:8 (2.47) BS09 CLA N/A N/A N/A 38806516
    46533 8wb4:8 (2.47) BS11 CLA N/A N/A N/A 38806516
    46534 8wb4:8 (2.47) BS12 CLA N/A N/A N/A 38806516
    46535 8wb4:9 (2.47) BS01 CLA N/A N/A N/A 38806516
    46536 8wb4:9 (2.47) BS04 CLA N/A N/A N/A 38806516
    46537 8wb4:9 (2.47) BS05 CLA N/A N/A N/A 38806516
    46538 8wb4:9 (2.47) BS06 CLA N/A N/A N/A 38806516
    46539 8wb4:9 (2.47) BS07 CLA N/A N/A N/A 38806516
    46540 8wb4:9 (2.47) BS08 CLA N/A N/A N/A 38806516
    46541 8wb4:9 (2.47) BS09 CLA N/A N/A N/A 38806516
    46542 8wb4:9 (2.47) BS10 CLA N/A N/A N/A 38806516
    46543 8wb4:9 (2.47) BS11 CLA N/A N/A N/A 38806516
    46544 8wb4:9 (2.47) BS12 CLA N/A N/A N/A 38806516
    46545 8wb4:9 (2.47) BS13 CLA N/A N/A N/A 38806516
    46546 8wb4:A (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46547 8wb4:A (2.47) BS04 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46548 8wb4:A (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46549 8wb4:A (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46550 8wb4:A (2.47) BS11 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46551 8wb4:A (2.47) BS13 CLA 1.10.3.9 GO:0005506 ... A0A222AI41 38806516
    46552 8wb4:B (2.47) BS01 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46553 8wb4:B (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46554 8wb4:B (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46555 8wb4:B (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46556 8wb4:B (2.47) BS05 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46557 8wb4:B (2.47) BS06 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46558 8wb4:B (2.47) BS07 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46559 8wb4:B (2.47) BS08 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46560 8wb4:B (2.47) BS09 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46561 8wb4:B (2.47) BS10 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46562 8wb4:B (2.47) BS11 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46563 8wb4:B (2.47) BS12 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46564 8wb4:B (2.47) BS13 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46565 8wb4:B (2.47) BS14 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46566 8wb4:B (2.47) BS15 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46567 8wb4:B (2.47) BS16 CLA ? GO:0009523 ... A0A222AIE3 38806516
    46568 8wb4:C (2.47) BS04 CLA ? GO:0005737 ... A0A222AI36 38806516
    46569 8wb4:C (2.47) BS05 CLA ? GO:0005737 ... A0A222AI36 38806516
    46570 8wb4:C (2.47) BS06 CLA ? GO:0005737 ... A0A222AI36 38806516
    46571 8wb4:C (2.47) BS07 CLA ? GO:0005737 ... A0A222AI36 38806516
    46572 8wb4:C (2.47) BS08 CLA ? GO:0005737 ... A0A222AI36 38806516
    46573 8wb4:C (2.47) BS09 CLA ? GO:0005737 ... A0A222AI36 38806516
    46574 8wb4:C (2.47) BS10 CLA ? GO:0005737 ... A0A222AI36 38806516
    46575 8wb4:C (2.47) BS11 CLA ? GO:0005737 ... A0A222AI36 38806516
    46576 8wb4:C (2.47) BS12 CLA ? GO:0005737 ... A0A222AI36 38806516
    46577 8wb4:C (2.47) BS13 CLA ? GO:0005737 ... A0A222AI36 38806516
    46578 8wb4:C (2.47) BS14 CLA ? GO:0005737 ... A0A222AI36 38806516
    46579 8wb4:C (2.47) BS15 CLA ? GO:0005737 ... A0A222AI36 38806516
    46580 8wb4:C (2.47) BS16 CLA ? GO:0005737 ... A0A222AI36 38806516
    46581 8wb4:D (2.47) BS01 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46582 8wb4:D (2.47) BS03 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46583 8wb4:D (2.47) BS05 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46584 8wb4:D (2.47) BS06 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46585 8wb4:D (2.47) BS09 CLA 1.10.3.9 GO:0005506 ... A0A222AI37 38806516
    46586 8wb4:G (2.47) BS01 CLA N/A N/A N/A 38806516
    46587 8wb4:H (2.47) BS02 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46588 8wb4:H (2.47) BS03 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46589 8wb4:H (2.47) BS04 CLA ? GO:0009523 ... A0A222AIE4 38806516
    46590 8wb4:I (2.47) BS01 CLA ? GO:0005737 ... A0A222AI80 38806516
    46591 8wb4:I (2.47) BS02 CLA ? GO:0005737 ... A0A222AI80 38806516
    46592 8wb4:K (2.47) BS03 CLA ? GO:0005737 ... A0A222AIA0 38806516
    46593 8wb4:K (2.47) BS04 CLA ? GO:0005737 ... A0A222AIA0 38806516
    46594 8wb4:P (2.47) BS01 CLA N/A N/A N/A 38806516
    46595 8wb4:P (2.47) BS02 CLA N/A N/A N/A 38806516
    46596 8wb4:P (2.47) BS03 CLA N/A N/A N/A 38806516
    46597 8wb4:P (2.47) BS04 CLA N/A N/A N/A 38806516
    46598 8wb4:P (2.47) BS06 CLA N/A N/A N/A 38806516
    46599 8wb4:P (2.47) BS07 CLA N/A N/A N/A 38806516
    46600 8wb4:P (2.47) BS08 CLA N/A N/A N/A 38806516
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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