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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    46201 8kde:C (2.6) BS07 CLA N/A GO:0005737 ... P10898 38890314
    46202 8kde:C (2.6) BS08 CLA N/A GO:0005737 ... P10898 38890314
    46203 8kde:C (2.6) BS09 CLA N/A GO:0005737 ... P10898 38890314
    46204 8kde:C (2.6) BS10 CLA N/A GO:0005737 ... P10898 38890314
    46205 8kde:C (2.6) BS11 CLA N/A GO:0005737 ... P10898 38890314
    46206 8kde:C (2.6) BS12 CLA N/A GO:0005737 ... P10898 38890314
    46207 8kde:C (2.6) BS13 CLA N/A GO:0005737 ... P10898 38890314
    46208 8kde:D (2.6) BS01 CLA N/A GO:0005506 ... P06007 38890314
    46209 8kde:D (2.6) BS02 CLA N/A GO:0005506 ... P06007 38890314
    46210 8kde:D (2.6) BS03 CLA N/A GO:0005506 ... P06007 38890314
    46211 8kde:D (2.6) BS04 CLA N/A GO:0005506 ... P06007 38890314
    46212 8kde:D (2.6) BS10 CLA N/A GO:0005506 ... P06007 38890314
    46213 8kde:H (2.6) BS01 CLA N/A GO:0009507 ... P22666 38890314
    46214 8kde:H (2.6) BS02 CLA N/A GO:0009507 ... P22666 38890314
    46215 8kde:I (2.6) BS01 CLA N/A GO:0005737 ... P59763 38890314
    46216 8kde:K (2.6) BS01 CLA N/A GO:0005737 ... P18263 38890314
    46217 8ov5:M (1.15) BS01 CLA ? GO:0016168 ... P80484 N/A
    46218 8ov5:M (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    46219 8ov5:N (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    46220 8ov5:N (1.15) BS03 CLA ? GO:0016168 ... P80484 N/A
    46221 8ov5:O (1.15) BS02 CLA ? GO:0016168 ... P80484 N/A
    46222 8ov5:O (1.15) BS03 CLA ? GO:0016168 ... P80484 N/A
    46223 8ow6:A (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    46224 8ow6:B (1.2) BS04 CLA N/A GO:0016168 ... Q9FEY4 N/A
    46225 8ow6:C (1.2) BS01 CLA ? GO:0016168 ... Q9FEY4 N/A
    46226 8ow6:D (1.2) BS05 CLA N/A GO:0016168 ... Q9FEY4 N/A
    46227 8r2i:A (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46228 8r2i:A (2.9) BS04 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46229 8r2i:A (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46230 8r2i:A (2.9) BS07 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46231 8r2i:A (2.9) BS08 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46232 8r2i:A (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P07753 38322422
    46233 8r2i:B (2.9) BS01 CLA ? GO:0009507 ... P37255 38322422
    46234 8r2i:B (2.9) BS02 CLA ? GO:0009507 ... P37255 38322422
    46235 8r2i:B (2.9) BS03 CLA ? GO:0009507 ... P37255 38322422
    46236 8r2i:B (2.9) BS04 CLA ? GO:0009507 ... P37255 38322422
    46237 8r2i:B (2.9) BS05 CLA ? GO:0009507 ... P37255 38322422
    46238 8r2i:B (2.9) BS06 CLA ? GO:0009507 ... P37255 38322422
    46239 8r2i:B (2.9) BS07 CLA ? GO:0009507 ... P37255 38322422
    46240 8r2i:B (2.9) BS08 CLA ? GO:0009507 ... P37255 38322422
    46241 8r2i:B (2.9) BS09 CLA ? GO:0009507 ... P37255 38322422
    46242 8r2i:B (2.9) BS10 CLA ? GO:0009507 ... P37255 38322422
    46243 8r2i:B (2.9) BS11 CLA ? GO:0009507 ... P37255 38322422
    46244 8r2i:B (2.9) BS12 CLA ? GO:0009507 ... P37255 38322422
    46245 8r2i:B (2.9) BS13 CLA ? GO:0009507 ... P37255 38322422
    46246 8r2i:B (2.9) BS14 CLA ? GO:0009507 ... P37255 38322422
    46247 8r2i:B (2.9) BS15 CLA ? GO:0009507 ... P37255 38322422
    46248 8r2i:B (2.9) BS16 CLA ? GO:0009507 ... P37255 38322422
    46249 8r2i:C (2.9) BS02 CLA ? GO:0005737 ... P10898 38322422
    46250 8r2i:C (2.9) BS03 CLA ? GO:0005737 ... P10898 38322422
    46251 8r2i:C (2.9) BS04 CLA ? GO:0005737 ... P10898 38322422
    46252 8r2i:C (2.9) BS05 CLA ? GO:0005737 ... P10898 38322422
    46253 8r2i:C (2.9) BS06 CLA ? GO:0005737 ... P10898 38322422
    46254 8r2i:C (2.9) BS07 CLA ? GO:0005737 ... P10898 38322422
    46255 8r2i:C (2.9) BS08 CLA ? GO:0005737 ... P10898 38322422
    46256 8r2i:C (2.9) BS09 CLA ? GO:0005737 ... P10898 38322422
    46257 8r2i:C (2.9) BS10 CLA ? GO:0005737 ... P10898 38322422
    46258 8r2i:C (2.9) BS11 CLA ? GO:0005737 ... P10898 38322422
    46259 8r2i:C (2.9) BS12 CLA ? GO:0005737 ... P10898 38322422
    46260 8r2i:C (2.9) BS13 CLA ? GO:0005737 ... P10898 38322422
    46261 8r2i:C (2.9) BS14 CLA ? GO:0005737 ... P10898 38322422
    46262 8r2i:D (2.9) BS02 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46263 8r2i:D (2.9) BS03 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46264 8r2i:D (2.9) BS05 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46265 8r2i:D (2.9) BS06 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46266 8r2i:D (2.9) BS09 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46267 8r2i:D (2.9) BS10 CLA 1.10.3.9 GO:0005506 ... P06007 38322422
    46268 8r2i:H (2.9) BS01 CLA ? GO:0009523 ... P22666 38322422
    46269 8r2i:H (2.9) BS02 CLA ? GO:0009523 ... P22666 38322422
    46270 8r2i:H (2.9) BS03 CLA ? GO:0009523 ... P22666 38322422
    46271 8r2i:H (2.9) BS04 CLA ? GO:0009523 ... P22666 38322422
    46272 8r2i:H (2.9) BS05 CLA ? GO:0009523 ... P22666 38322422
    46273 8r2i:K (2.9) BS01 CLA ? GO:0009523 ... P18263 38322422
    46274 8tow:A (2.14) BS03 CLA N/A GO:0005506 ... P16033 38879008
    46275 8tow:A (2.14) BS04 CLA N/A GO:0005506 ... P16033 38879008
    46276 8tow:A (2.14) BS06 CLA N/A GO:0005506 ... P16033 38879008
    46277 8tow:A (2.14) BS08 CLA N/A GO:0005506 ... P16033 38879008
    46278 8tow:A (2.14) BS09 CLA N/A GO:0005506 ... P16033 38879008
    46279 8tow:B (2.14) BS01 CLA N/A GO:0009523 ... P05429 38879008
    46280 8tow:B (2.14) BS02 CLA N/A GO:0009523 ... P05429 38879008
    46281 8tow:B (2.14) BS03 CLA N/A GO:0009523 ... P05429 38879008
    46282 8tow:B (2.14) BS04 CLA N/A GO:0009523 ... P05429 38879008
    46283 8tow:B (2.14) BS05 CLA N/A GO:0009523 ... P05429 38879008
    46284 8tow:B (2.14) BS06 CLA N/A GO:0009523 ... P05429 38879008
    46285 8tow:B (2.14) BS07 CLA N/A GO:0009523 ... P05429 38879008
    46286 8tow:B (2.14) BS08 CLA N/A GO:0009523 ... P05429 38879008
    46287 8tow:B (2.14) BS09 CLA N/A GO:0009523 ... P05429 38879008
    46288 8tow:B (2.14) BS10 CLA N/A GO:0009523 ... P05429 38879008
    46289 8tow:B (2.14) BS11 CLA N/A GO:0009523 ... P05429 38879008
    46290 8tow:B (2.14) BS12 CLA N/A GO:0009523 ... P05429 38879008
    46291 8tow:B (2.14) BS13 CLA N/A GO:0009523 ... P05429 38879008
    46292 8tow:B (2.14) BS14 CLA N/A GO:0009523 ... P05429 38879008
    46293 8tow:B (2.14) BS15 CLA N/A GO:0009523 ... P05429 38879008
    46294 8tow:B (2.14) BS16 CLA N/A GO:0009523 ... P05429 38879008
    46295 8tow:C (2.14) BS02 CLA N/A GO:0005737 ... P09193 38879008
    46296 8tow:C (2.14) BS03 CLA N/A GO:0005737 ... P09193 38879008
    46297 8tow:C (2.14) BS04 CLA N/A GO:0005737 ... P09193 38879008
    46298 8tow:C (2.14) BS05 CLA N/A GO:0005737 ... P09193 38879008
    46299 8tow:C (2.14) BS06 CLA N/A GO:0005737 ... P09193 38879008
    46300 8tow:C (2.14) BS07 CLA N/A GO:0005737 ... P09193 38879008
    46301 8tow:C (2.14) BS08 CLA N/A GO:0005737 ... P09193 38879008
    46302 8tow:C (2.14) BS09 CLA N/A GO:0005737 ... P09193 38879008
    46303 8tow:C (2.14) BS10 CLA N/A GO:0005737 ... P09193 38879008
    46304 8tow:C (2.14) BS11 CLA N/A GO:0005737 ... P09193 38879008
    46305 8tow:C (2.14) BS12 CLA N/A GO:0005737 ... P09193 38879008
    46306 8tow:C (2.14) BS13 CLA N/A GO:0005737 ... P09193 38879008
    46307 8tow:C (2.14) BS14 CLA N/A GO:0005737 ... P09193 38879008
    46308 8tow:D (2.14) BS02 CLA N/A GO:0005506 ... P09192 38879008
    46309 8tow:D (2.14) BS05 CLA N/A GO:0005506 ... P09192 38879008
    46310 8tow:D (2.14) BS06 CLA N/A GO:0005506 ... P09192 38879008
    46311 8tow:D (2.14) BS08 CLA N/A GO:0005506 ... P09192 38879008
    46312 8tow:D (2.14) BS09 CLA N/A GO:0005506 ... P09192 38879008
    46313 8tow:H (2.14) BS01 CLA N/A GO:0009523 ... P14835 38879008
    46314 8tow:H (2.14) BS02 CLA N/A GO:0009523 ... P14835 38879008
    46315 8tow:H (2.14) BS03 CLA N/A GO:0009523 ... P14835 38879008
    46316 8tow:H (2.14) BS04 CLA N/A GO:0009523 ... P14835 38879008
    46317 8tow:I (2.14) BS01 CLA N/A GO:0005737 ... Q54697 38879008
    46318 8tow:I (2.14) BS02 CLA N/A GO:0005737 ... Q54697 38879008
    46319 8tow:K (2.14) BS01 CLA N/A GO:0005737 ... P15819 38879008
    46320 8tow:K (2.14) BS02 CLA N/A GO:0005737 ... P15819 38879008
    46321 8tow:M (2.14) BS01 CLA N/A GO:0005737 ... P72701 38879008
    46322 8tow:X (2.14) BS01 CLA N/A GO:0009523 ... P72575 38879008
    46323 8tow:Z (2.14) BS01 CLA N/A GO:0009523 ... P73528 38879008
    46324 8tow:a (2.14) BS03 CLA N/A GO:0005506 ... P16033 38879008
    46325 8tow:a (2.14) BS04 CLA N/A GO:0005506 ... P16033 38879008
    46326 8tow:a (2.14) BS06 CLA N/A GO:0005506 ... P16033 38879008
    46327 8tow:a (2.14) BS08 CLA N/A GO:0005506 ... P16033 38879008
    46328 8tow:a (2.14) BS09 CLA N/A GO:0005506 ... P16033 38879008
    46329 8tow:b (2.14) BS01 CLA N/A GO:0009523 ... P05429 38879008
    46330 8tow:b (2.14) BS02 CLA N/A GO:0009523 ... P05429 38879008
    46331 8tow:b (2.14) BS03 CLA N/A GO:0009523 ... P05429 38879008
    46332 8tow:b (2.14) BS04 CLA N/A GO:0009523 ... P05429 38879008
    46333 8tow:b (2.14) BS05 CLA N/A GO:0009523 ... P05429 38879008
    46334 8tow:b (2.14) BS06 CLA N/A GO:0009523 ... P05429 38879008
    46335 8tow:b (2.14) BS07 CLA N/A GO:0009523 ... P05429 38879008
    46336 8tow:b (2.14) BS08 CLA N/A GO:0009523 ... P05429 38879008
    46337 8tow:b (2.14) BS09 CLA N/A GO:0009523 ... P05429 38879008
    46338 8tow:b (2.14) BS10 CLA N/A GO:0009523 ... P05429 38879008
    46339 8tow:b (2.14) BS11 CLA N/A GO:0009523 ... P05429 38879008
    46340 8tow:b (2.14) BS12 CLA N/A GO:0009523 ... P05429 38879008
    46341 8tow:b (2.14) BS13 CLA N/A GO:0009523 ... P05429 38879008
    46342 8tow:b (2.14) BS14 CLA N/A GO:0009523 ... P05429 38879008
    46343 8tow:b (2.14) BS15 CLA N/A GO:0009523 ... P05429 38879008
    46344 8tow:b (2.14) BS16 CLA N/A GO:0009523 ... P05429 38879008
    46345 8tow:c (2.14) BS02 CLA N/A GO:0005737 ... P09193 38879008
    46346 8tow:c (2.14) BS03 CLA N/A GO:0005737 ... P09193 38879008
    46347 8tow:c (2.14) BS04 CLA N/A GO:0005737 ... P09193 38879008
    46348 8tow:c (2.14) BS05 CLA N/A GO:0005737 ... P09193 38879008
    46349 8tow:c (2.14) BS06 CLA N/A GO:0005737 ... P09193 38879008
    46350 8tow:c (2.14) BS07 CLA N/A GO:0005737 ... P09193 38879008
    46351 8tow:c (2.14) BS08 CLA N/A GO:0005737 ... P09193 38879008
    46352 8tow:c (2.14) BS09 CLA N/A GO:0005737 ... P09193 38879008
    46353 8tow:c (2.14) BS10 CLA N/A GO:0005737 ... P09193 38879008
    46354 8tow:c (2.14) BS11 CLA N/A GO:0005737 ... P09193 38879008
    46355 8tow:c (2.14) BS12 CLA N/A GO:0005737 ... P09193 38879008
    46356 8tow:c (2.14) BS13 CLA N/A GO:0005737 ... P09193 38879008
    46357 8tow:c (2.14) BS14 CLA N/A GO:0005737 ... P09193 38879008
    46358 8tow:d (2.14) BS02 CLA N/A GO:0005506 ... P09192 38879008
    46359 8tow:d (2.14) BS05 CLA N/A GO:0005506 ... P09192 38879008
    46360 8tow:d (2.14) BS06 CLA N/A GO:0005506 ... P09192 38879008
    46361 8tow:d (2.14) BS08 CLA N/A GO:0005506 ... P09192 38879008
    46362 8tow:d (2.14) BS09 CLA N/A GO:0005506 ... P09192 38879008
    46363 8tow:h (2.14) BS01 CLA N/A GO:0009523 ... P14835 38879008
    46364 8tow:h (2.14) BS02 CLA N/A GO:0009523 ... P14835 38879008
    46365 8tow:h (2.14) BS03 CLA N/A GO:0009523 ... P14835 38879008
    46366 8tow:h (2.14) BS04 CLA N/A GO:0009523 ... P14835 38879008
    46367 8tow:i (2.14) BS01 CLA N/A GO:0005737 ... Q54697 38879008
    46368 8tow:i (2.14) BS02 CLA N/A GO:0005737 ... Q54697 38879008
    46369 8tow:k (2.14) BS01 CLA N/A GO:0005737 ... P15819 38879008
    46370 8tow:k (2.14) BS02 CLA N/A GO:0005737 ... P15819 38879008
    46371 8tow:m (2.14) BS01 CLA N/A GO:0005737 ... P72701 38879008
    46372 8tow:x (2.14) BS01 CLA N/A GO:0009523 ... P72575 38879008
    46373 8tow:z (2.14) BS01 CLA N/A GO:0009523 ... P73528 38879008
    46374 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    46375 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    46376 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    46377 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    46378 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    46379 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    46380 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    46381 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    46382 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    46383 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    46384 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    46385 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    46386 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    46387 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    46388 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    46389 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    46390 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    46391 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    46392 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    46393 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    46394 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    46395 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    46396 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    46397 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    46398 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    46399 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    46400 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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