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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    45201 8jjr:C (2.8) BS19 CLA N/A GO:0009765 ... A0AA36MZ23 38493166
    45202 8jjr:D (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45203 8jjr:D (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45204 8jjr:D (2.8) BS03 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45205 8jjr:D (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45206 8jjr:D (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45207 8jjr:D (2.8) BS06 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45208 8jjr:D (2.8) BS07 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45209 8jjr:D (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45210 8jjr:D (2.8) BS09 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45211 8jjr:D (2.8) BS10 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45212 8jjr:D (2.8) BS11 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45213 8jjr:D (2.8) BS12 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45214 8jjr:D (2.8) BS13 CLA N/A GO:0009765 ... A0AA36JNS8 38493166
    45215 8jjr:E (2.8) BS01 CLA N/A GO:0009765 ... N/A 38493166
    45216 8jjr:E (2.8) BS05 CLA N/A GO:0009765 ... N/A 38493166
    45217 8jjr:E (2.8) BS06 CLA N/A GO:0009765 ... N/A 38493166
    45218 8jjr:E (2.8) BS07 CLA N/A GO:0009765 ... N/A 38493166
    45219 8jjr:E (2.8) BS08 CLA N/A GO:0009765 ... N/A 38493166
    45220 8jjr:E (2.8) BS09 CLA N/A GO:0009765 ... N/A 38493166
    45221 8jjr:E (2.8) BS10 CLA N/A GO:0009765 ... N/A 38493166
    45222 8jjr:E (2.8) BS11 CLA N/A GO:0009765 ... N/A 38493166
    45223 8jjr:E (2.8) BS12 CLA N/A GO:0009765 ... N/A 38493166
    45224 8jjr:E (2.8) BS14 CLA N/A GO:0009765 ... N/A 38493166
    45225 8jjr:E (2.8) BS15 CLA N/A GO:0009765 ... N/A 38493166
    45226 8jjr:F (2.8) BS01 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45227 8jjr:F (2.8) BS02 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45228 8jjr:F (2.8) BS03 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45229 8jjr:F (2.8) BS04 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45230 8jjr:F (2.8) BS05 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45231 8jjr:F (2.8) BS06 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45232 8jjr:F (2.8) BS07 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45233 8jjr:F (2.8) BS08 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45234 8jjr:F (2.8) BS10 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45235 8jjr:F (2.8) BS15 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45236 8jjr:F (2.8) BS16 CLA N/A GO:0009765 ... A0AA36INW6 38493166
    45237 8jjr:G (2.8) BS01 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45238 8jjr:G (2.8) BS03 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45239 8jjr:G (2.8) BS04 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45240 8jjr:G (2.8) BS05 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45241 8jjr:G (2.8) BS06 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45242 8jjr:G (2.8) BS07 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45243 8jjr:G (2.8) BS08 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45244 8jjr:G (2.8) BS09 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45245 8jjr:G (2.8) BS10 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45246 8jjr:G (2.8) BS11 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45247 8jjr:G (2.8) BS12 CLA N/A GO:0009765 ... A0AA36I3A4 38493166
    45248 8jjr:H (2.8) BS01 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45249 8jjr:H (2.8) BS04 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45250 8jjr:H (2.8) BS05 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45251 8jjr:H (2.8) BS06 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45252 8jjr:H (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45253 8jjr:H (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45254 8jjr:H (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45255 8jjr:H (2.8) BS10 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45256 8jjr:H (2.8) BS11 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45257 8jjr:H (2.8) BS13 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45258 8jjr:H (2.8) BS14 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45259 8jjr:H (2.8) BS20 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45260 8jjr:H (2.8) BS21 CLA N/A GO:0009765 ... A0AA36NGX7 38493166
    45261 8jjr:I (2.8) BS01 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45262 8jjr:I (2.8) BS02 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45263 8jjr:I (2.8) BS04 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45264 8jjr:I (2.8) BS05 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45265 8jjr:I (2.8) BS06 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45266 8jjr:I (2.8) BS07 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45267 8jjr:I (2.8) BS08 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45268 8jjr:I (2.8) BS09 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45269 8jjr:I (2.8) BS10 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45270 8jjr:I (2.8) BS15 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45271 8jjr:I (2.8) BS16 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45272 8jjr:I (2.8) BS17 CLA N/A GO:0009765 ... A0AA36HTH0 38493166
    45273 8jjr:J (2.8) BS01 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    45274 8jjr:J (2.8) BS03 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    45275 8jjr:J (2.8) BS05 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    45276 8jjr:J (2.8) BS07 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    45277 8jjr:J (2.8) BS09 CLA N/A GO:0009765 ... A0AA36N2P9 38493166
    45278 8jjr:K (2.8) BS01 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45279 8jjr:K (2.8) BS02 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45280 8jjr:K (2.8) BS03 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45281 8jjr:K (2.8) BS04 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45282 8jjr:K (2.8) BS05 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45283 8jjr:K (2.8) BS06 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45284 8jjr:K (2.8) BS08 CLA N/A GO:0009765 ... A0AA36J0D5 38493166
    45285 8jjr:T (2.8) BS01 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45286 8jjr:T (2.8) BS02 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45287 8jjr:T (2.8) BS03 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45288 8jjr:T (2.8) BS04 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45289 8jjr:T (2.8) BS05 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45290 8jjr:T (2.8) BS06 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45291 8jjr:T (2.8) BS07 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45292 8jjr:T (2.8) BS08 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45293 8jjr:T (2.8) BS09 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45294 8jjr:T (2.8) BS11 CLA N/A GO:0009765 ... A0AA36NBE3 38493166
    45295 8jjr:U (2.8) BS01 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    45296 8jjr:U (2.8) BS02 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    45297 8jjr:U (2.8) BS04 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    45298 8jjr:U (2.8) BS05 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    45299 8jjr:U (2.8) BS08 CLA N/A GO:0009765 ... A0AA36JI10 38493166
    45300 8jjr:a (2.8) BS01 CLA N/A GO:0009579 ... N/A 38493166
    45301 8jjr:a (2.8) BS02 CLA N/A GO:0009579 ... N/A 38493166
    45302 8jjr:a (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    45303 8jjr:a (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    45304 8jjr:a (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    45305 8jjr:a (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    45306 8jjr:a (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    45307 8jjr:a (2.8) BS08 CLA N/A GO:0009579 ... N/A 38493166
    45308 8jjr:a (2.8) BS09 CLA N/A GO:0009579 ... N/A 38493166
    45309 8jjr:a (2.8) BS10 CLA N/A GO:0009579 ... N/A 38493166
    45310 8jjr:a (2.8) BS11 CLA N/A GO:0009579 ... N/A 38493166
    45311 8jjr:a (2.8) BS12 CLA N/A GO:0009579 ... N/A 38493166
    45312 8jjr:a (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    45313 8jjr:a (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    45314 8jjr:a (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    45315 8jjr:a (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    45316 8jjr:a (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    45317 8jjr:a (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    45318 8jjr:a (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    45319 8jjr:a (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    45320 8jjr:a (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    45321 8jjr:a (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    45322 8jjr:a (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    45323 8jjr:a (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    45324 8jjr:a (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    45325 8jjr:a (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    45326 8jjr:a (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    45327 8jjr:a (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    45328 8jjr:a (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    45329 8jjr:a (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    45330 8jjr:a (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    45331 8jjr:a (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    45332 8jjr:a (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    45333 8jjr:a (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    45334 8jjr:a (2.8) BS37 CLA N/A GO:0009579 ... N/A 38493166
    45335 8jjr:a (2.8) BS38 CLA N/A GO:0009579 ... N/A 38493166
    45336 8jjr:a (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    45337 8jjr:a (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    45338 8jjr:a (2.8) BS41 CLA N/A GO:0009579 ... N/A 38493166
    45339 8jjr:a (2.8) BS42 CLA N/A GO:0009579 ... N/A 38493166
    45340 8jjr:a (2.8) BS43 CLA N/A GO:0009579 ... N/A 38493166
    45341 8jjr:a (2.8) BS44 CLA N/A GO:0009579 ... N/A 38493166
    45342 8jjr:a (2.8) BS45 CLA N/A GO:0009579 ... N/A 38493166
    45343 8jjr:b (2.8) BS01 CLA N/A GO:0009579 ... N/A 38493166
    45344 8jjr:b (2.8) BS02 CLA N/A GO:0009579 ... N/A 38493166
    45345 8jjr:b (2.8) BS03 CLA N/A GO:0009579 ... N/A 38493166
    45346 8jjr:b (2.8) BS04 CLA N/A GO:0009579 ... N/A 38493166
    45347 8jjr:b (2.8) BS05 CLA N/A GO:0009579 ... N/A 38493166
    45348 8jjr:b (2.8) BS06 CLA N/A GO:0009579 ... N/A 38493166
    45349 8jjr:b (2.8) BS07 CLA N/A GO:0009579 ... N/A 38493166
    45350 8jjr:b (2.8) BS09 CLA N/A GO:0009579 ... N/A 38493166
    45351 8jjr:b (2.8) BS10 CLA N/A GO:0009579 ... N/A 38493166
    45352 8jjr:b (2.8) BS11 CLA N/A GO:0009579 ... N/A 38493166
    45353 8jjr:b (2.8) BS12 CLA N/A GO:0009579 ... N/A 38493166
    45354 8jjr:b (2.8) BS13 CLA N/A GO:0009579 ... N/A 38493166
    45355 8jjr:b (2.8) BS14 CLA N/A GO:0009579 ... N/A 38493166
    45356 8jjr:b (2.8) BS15 CLA N/A GO:0009579 ... N/A 38493166
    45357 8jjr:b (2.8) BS16 CLA N/A GO:0009579 ... N/A 38493166
    45358 8jjr:b (2.8) BS17 CLA N/A GO:0009579 ... N/A 38493166
    45359 8jjr:b (2.8) BS18 CLA N/A GO:0009579 ... N/A 38493166
    45360 8jjr:b (2.8) BS19 CLA N/A GO:0009579 ... N/A 38493166
    45361 8jjr:b (2.8) BS20 CLA N/A GO:0009579 ... N/A 38493166
    45362 8jjr:b (2.8) BS21 CLA N/A GO:0009579 ... N/A 38493166
    45363 8jjr:b (2.8) BS22 CLA N/A GO:0009579 ... N/A 38493166
    45364 8jjr:b (2.8) BS23 CLA N/A GO:0009579 ... N/A 38493166
    45365 8jjr:b (2.8) BS24 CLA N/A GO:0009579 ... N/A 38493166
    45366 8jjr:b (2.8) BS25 CLA N/A GO:0009579 ... N/A 38493166
    45367 8jjr:b (2.8) BS26 CLA N/A GO:0009579 ... N/A 38493166
    45368 8jjr:b (2.8) BS27 CLA N/A GO:0009579 ... N/A 38493166
    45369 8jjr:b (2.8) BS28 CLA N/A GO:0009579 ... N/A 38493166
    45370 8jjr:b (2.8) BS29 CLA N/A GO:0009579 ... N/A 38493166
    45371 8jjr:b (2.8) BS30 CLA N/A GO:0009579 ... N/A 38493166
    45372 8jjr:b (2.8) BS31 CLA N/A GO:0009579 ... N/A 38493166
    45373 8jjr:b (2.8) BS32 CLA N/A GO:0009579 ... N/A 38493166
    45374 8jjr:b (2.8) BS33 CLA N/A GO:0009579 ... N/A 38493166
    45375 8jjr:b (2.8) BS34 CLA N/A GO:0009579 ... N/A 38493166
    45376 8jjr:b (2.8) BS35 CLA N/A GO:0009579 ... N/A 38493166
    45377 8jjr:b (2.8) BS36 CLA N/A GO:0009579 ... N/A 38493166
    45378 8jjr:b (2.8) BS39 CLA N/A GO:0009579 ... N/A 38493166
    45379 8jjr:b (2.8) BS40 CLA N/A GO:0009579 ... N/A 38493166
    45380 8jjr:f (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    45381 8jjr:f (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    45382 8jjr:f (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    45383 8jjr:f (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    45384 8jjr:f (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N3P6 38493166
    45385 8jjr:i (2.8) BS01 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    45386 8jjr:i (2.8) BS02 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    45387 8jjr:i (2.8) BS03 CLA N/A GO:0009522 ... A0AA36J2Y9 38493166
    45388 8jjr:j (2.8) BS01 CLA N/A N/A A0AA36N211 38493166
    45389 8jjr:j (2.8) BS02 CLA N/A N/A A0AA36N211 38493166
    45390 8jjr:j (2.8) BS03 CLA N/A N/A A0AA36N211 38493166
    45391 8jjr:j (2.8) BS04 CLA N/A N/A A0AA36N211 38493166
    45392 8jjr:l (2.8) BS01 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45393 8jjr:l (2.8) BS02 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45394 8jjr:l (2.8) BS03 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45395 8jjr:l (2.8) BS04 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45396 8jjr:l (2.8) BS05 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45397 8jjr:l (2.8) BS06 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45398 8jjr:l (2.8) BS07 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45399 8jjr:l (2.8) BS08 CLA N/A GO:0009522 ... A0AA36N262 38493166
    45400 8jjr:l (2.8) BS09 CLA N/A GO:0009522 ... A0AA36N262 38493166
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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