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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44401 8ix2:G (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    44402 8ix2:G (2.8) BS07 CLA ? GO:0009765 ... P12333 37653340
    44403 8ix2:G (2.8) BS08 CLA ? GO:0009765 ... P12333 37653340
    44404 8ix2:G (2.8) BS09 CLA ? GO:0009765 ... P12333 37653340
    44405 8ix2:G (2.8) BS10 CLA ? GO:0009765 ... P12333 37653340
    44406 8ix2:N (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    44407 8ix2:N (2.8) BS05 CLA ? GO:0009765 ... P12333 37653340
    44408 8ix2:N (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    44409 8ix2:Y (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    44410 8ix2:Y (2.8) BS02 CLA ? GO:0009765 ... P12333 37653340
    44411 8ix2:Y (2.8) BS06 CLA ? GO:0009765 ... P12333 37653340
    44412 8ix2:Y (2.8) BS07 CLA ? GO:0009765 ... P12333 37653340
    44413 8ix2:Y (2.8) BS08 CLA ? GO:0009765 ... P12333 37653340
    44414 8j0d:3 (3.19) BS01 CLA ? GO:0009416 ... B8BUU4 37878698
    44415 8j0d:3 (3.19) BS02 CLA ? GO:0009416 ... B8BUU4 37878698
    44416 8j0d:3 (3.19) BS03 CLA ? GO:0009416 ... B8BUU4 37878698
    44417 8j0d:3 (3.19) BS04 CLA ? GO:0009416 ... B8BUU4 37878698
    44418 8j0d:3 (3.19) BS05 CLA ? GO:0009416 ... B8BUU4 37878698
    44419 8j0d:3 (3.19) BS06 CLA ? GO:0009416 ... B8BUU4 37878698
    44420 8j0d:3 (3.19) BS07 CLA ? GO:0009416 ... B8BUU4 37878698
    44421 8j0d:3 (3.19) BS09 CLA ? GO:0009416 ... B8BUU4 37878698
    44422 8j0d:3 (3.19) BS10 CLA ? GO:0009416 ... B8BUU4 37878698
    44423 8j0d:3 (3.19) BS14 CLA ? GO:0009416 ... B8BUU4 37878698
    44424 8j0d:4 (3.19) BS01 CLA ? GO:0009416 ... B8BVI1 37878698
    44425 8j0d:4 (3.19) BS05 CLA ? GO:0009416 ... B8BVI1 37878698
    44426 8j0d:4 (3.19) BS06 CLA ? GO:0009416 ... B8BVI1 37878698
    44427 8j0d:4 (3.19) BS08 CLA ? GO:0009416 ... B8BVI1 37878698
    44428 8j0d:4 (3.19) BS09 CLA ? GO:0009416 ... B8BVI1 37878698
    44429 8j0d:4 (3.19) BS10 CLA ? GO:0009416 ... B8BVI1 37878698
    44430 8j0d:4 (3.19) BS11 CLA ? GO:0009416 ... B8BVI1 37878698
    44431 8j0d:4 (3.19) BS12 CLA ? GO:0009416 ... B8BVI1 37878698
    44432 8j0d:4 (3.19) BS13 CLA ? GO:0009416 ... B8BVI1 37878698
    44433 8j0d:4 (3.19) BS14 CLA ? GO:0009416 ... B8BVI1 37878698
    44434 8j0d:4 (3.19) BS15 CLA ? GO:0009416 ... B8BVI1 37878698
    44435 8j0d:4 (3.19) BS16 CLA ? GO:0009416 ... B8BVI1 37878698
    44436 8j0d:5 (3.19) BS01 CLA ? GO:0009765 ... B8BX92 37878698
    44437 8j0d:5 (3.19) BS06 CLA ? GO:0009765 ... B8BX92 37878698
    44438 8j0d:5 (3.19) BS07 CLA ? GO:0009765 ... B8BX92 37878698
    44439 8j0d:5 (3.19) BS09 CLA ? GO:0009765 ... B8BX92 37878698
    44440 8j0d:5 (3.19) BS10 CLA ? GO:0009765 ... B8BX92 37878698
    44441 8j0d:5 (3.19) BS11 CLA ? GO:0009765 ... B8BX92 37878698
    44442 8j0d:5 (3.19) BS12 CLA ? GO:0009765 ... B8BX92 37878698
    44443 8j0d:5 (3.19) BS14 CLA ? GO:0009765 ... B8BX92 37878698
    44444 8j0d:6 (3.19) BS01 CLA ? GO:0009416 ... B8CEV5 37878698
    44445 8j0d:6 (3.19) BS05 CLA ? GO:0009416 ... B8CEV5 37878698
    44446 8j0d:6 (3.19) BS06 CLA ? GO:0009416 ... B8CEV5 37878698
    44447 8j0d:6 (3.19) BS08 CLA ? GO:0009416 ... B8CEV5 37878698
    44448 8j0d:6 (3.19) BS09 CLA ? GO:0009416 ... B8CEV5 37878698
    44449 8j0d:6 (3.19) BS10 CLA ? GO:0009416 ... B8CEV5 37878698
    44450 8j0d:6 (3.19) BS11 CLA ? GO:0009416 ... B8CEV5 37878698
    44451 8j0d:6 (3.19) BS13 CLA ? GO:0009416 ... B8CEV5 37878698
    44452 8j0d:6 (3.19) BS14 CLA ? GO:0009416 ... B8CEV5 37878698
    44453 8j5k:0 (2.93) BS03 CLA N/A GO:0009765 ... N/A 38071196
    44454 8j5k:0 (2.93) BS04 CLA N/A GO:0009765 ... N/A 38071196
    44455 8j5k:0 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    44456 8j5k:0 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    44457 8j5k:0 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    44458 8j5k:0 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    44459 8j5k:0 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    44460 8j5k:0 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    44461 8j5k:0 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    44462 8j5k:1 (2.93) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    44463 8j5k:1 (2.93) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    44464 8j5k:1 (2.93) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    44465 8j5k:1 (2.93) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    44466 8j5k:1 (2.93) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    44467 8j5k:1 (2.93) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    44468 8j5k:1 (2.93) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    44469 8j5k:1 (2.93) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    44470 8j5k:1 (2.93) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    44471 8j5k:1 (2.93) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    44472 8j5k:1 (2.93) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    44473 8j5k:1 (2.93) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    44474 8j5k:1 (2.93) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    44475 8j5k:1 (2.93) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    44476 8j5k:2 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    44477 8j5k:2 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    44478 8j5k:2 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    44479 8j5k:2 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    44480 8j5k:2 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    44481 8j5k:2 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    44482 8j5k:2 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    44483 8j5k:2 (2.93) BS12 CLA N/A GO:0009765 ... N/A 38071196
    44484 8j5k:2 (2.93) BS13 CLA N/A GO:0009765 ... N/A 38071196
    44485 8j5k:2 (2.93) BS14 CLA N/A GO:0009765 ... N/A 38071196
    44486 8j5k:2 (2.93) BS15 CLA N/A GO:0009765 ... N/A 38071196
    44487 8j5k:2 (2.93) BS16 CLA N/A GO:0009765 ... N/A 38071196
    44488 8j5k:2 (2.93) BS17 CLA N/A GO:0009765 ... N/A 38071196
    44489 8j5k:2 (2.93) BS18 CLA N/A GO:0009765 ... N/A 38071196
    44490 8j5k:3 (2.93) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    44491 8j5k:3 (2.93) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    44492 8j5k:3 (2.93) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    44493 8j5k:3 (2.93) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    44494 8j5k:3 (2.93) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    44495 8j5k:3 (2.93) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    44496 8j5k:3 (2.93) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    44497 8j5k:3 (2.93) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    44498 8j5k:3 (2.93) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    44499 8j5k:4 (2.93) BS03 CLA N/A N/A N/A 38071196
    44500 8j5k:4 (2.93) BS04 CLA N/A N/A N/A 38071196
    44501 8j5k:4 (2.93) BS05 CLA N/A N/A N/A 38071196
    44502 8j5k:4 (2.93) BS06 CLA N/A N/A N/A 38071196
    44503 8j5k:4 (2.93) BS07 CLA N/A N/A N/A 38071196
    44504 8j5k:4 (2.93) BS08 CLA N/A N/A N/A 38071196
    44505 8j5k:4 (2.93) BS09 CLA N/A N/A N/A 38071196
    44506 8j5k:5 (2.93) BS03 CLA N/A GO:0009765 ... N/A 38071196
    44507 8j5k:5 (2.93) BS04 CLA N/A GO:0009765 ... N/A 38071196
    44508 8j5k:5 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    44509 8j5k:5 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    44510 8j5k:5 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    44511 8j5k:5 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    44512 8j5k:5 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    44513 8j5k:5 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    44514 8j5k:5 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    44515 8j5k:6 (2.93) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    44516 8j5k:6 (2.93) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    44517 8j5k:6 (2.93) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    44518 8j5k:6 (2.93) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    44519 8j5k:6 (2.93) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    44520 8j5k:6 (2.93) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    44521 8j5k:6 (2.93) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    44522 8j5k:6 (2.93) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    44523 8j5k:6 (2.93) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    44524 8j5k:6 (2.93) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    44525 8j5k:6 (2.93) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    44526 8j5k:6 (2.93) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    44527 8j5k:6 (2.93) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    44528 8j5k:6 (2.93) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    44529 8j5k:7 (2.93) BS05 CLA N/A GO:0009765 ... N/A 38071196
    44530 8j5k:7 (2.93) BS06 CLA N/A GO:0009765 ... N/A 38071196
    44531 8j5k:7 (2.93) BS07 CLA N/A GO:0009765 ... N/A 38071196
    44532 8j5k:7 (2.93) BS08 CLA N/A GO:0009765 ... N/A 38071196
    44533 8j5k:7 (2.93) BS09 CLA N/A GO:0009765 ... N/A 38071196
    44534 8j5k:7 (2.93) BS10 CLA N/A GO:0009765 ... N/A 38071196
    44535 8j5k:7 (2.93) BS11 CLA N/A GO:0009765 ... N/A 38071196
    44536 8j5k:7 (2.93) BS12 CLA N/A GO:0009765 ... N/A 38071196
    44537 8j5k:7 (2.93) BS13 CLA N/A GO:0009765 ... N/A 38071196
    44538 8j5k:7 (2.93) BS14 CLA N/A GO:0009765 ... N/A 38071196
    44539 8j5k:7 (2.93) BS15 CLA N/A GO:0009765 ... N/A 38071196
    44540 8j5k:7 (2.93) BS16 CLA N/A GO:0009765 ... N/A 38071196
    44541 8j5k:7 (2.93) BS17 CLA N/A GO:0009765 ... N/A 38071196
    44542 8j5k:7 (2.93) BS18 CLA N/A GO:0009765 ... N/A 38071196
    44543 8j5k:8 (2.93) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    44544 8j5k:8 (2.93) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    44545 8j5k:8 (2.93) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    44546 8j5k:8 (2.93) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    44547 8j5k:8 (2.93) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    44548 8j5k:8 (2.93) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    44549 8j5k:8 (2.93) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    44550 8j5k:8 (2.93) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    44551 8j5k:8 (2.93) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    44552 8j5k:9 (2.93) BS03 CLA N/A N/A N/A 38071196
    44553 8j5k:9 (2.93) BS04 CLA N/A N/A N/A 38071196
    44554 8j5k:9 (2.93) BS05 CLA N/A N/A N/A 38071196
    44555 8j5k:9 (2.93) BS06 CLA N/A N/A N/A 38071196
    44556 8j5k:9 (2.93) BS07 CLA N/A N/A N/A 38071196
    44557 8j5k:9 (2.93) BS08 CLA N/A N/A N/A 38071196
    44558 8j5k:9 (2.93) BS09 CLA N/A N/A N/A 38071196
    44559 8j5k:A (2.93) BS04 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    44560 8j5k:A (2.93) BS05 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    44561 8j5k:A (2.93) BS08 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    44562 8j5k:A (2.93) BS09 CLA 1.10.3.9 GO:0005506 ... A0A8F5GJ32 38071196
    44563 8j5k:B (2.93) BS01 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44564 8j5k:B (2.93) BS02 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44565 8j5k:B (2.93) BS03 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44566 8j5k:B (2.93) BS04 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44567 8j5k:B (2.93) BS05 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44568 8j5k:B (2.93) BS06 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44569 8j5k:B (2.93) BS07 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44570 8j5k:B (2.93) BS08 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44571 8j5k:B (2.93) BS09 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44572 8j5k:B (2.93) BS10 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44573 8j5k:B (2.93) BS11 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44574 8j5k:B (2.93) BS12 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44575 8j5k:B (2.93) BS13 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44576 8j5k:B (2.93) BS14 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44577 8j5k:B (2.93) BS15 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44578 8j5k:B (2.93) BS16 CLA ? GO:0009507 ... A0A679C6E3 38071196
    44579 8j5k:C (2.93) BS02 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44580 8j5k:C (2.93) BS03 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44581 8j5k:C (2.93) BS04 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44582 8j5k:C (2.93) BS05 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44583 8j5k:C (2.93) BS06 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44584 8j5k:C (2.93) BS07 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44585 8j5k:C (2.93) BS08 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44586 8j5k:C (2.93) BS09 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44587 8j5k:C (2.93) BS10 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44588 8j5k:C (2.93) BS11 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44589 8j5k:C (2.93) BS12 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44590 8j5k:C (2.93) BS13 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44591 8j5k:C (2.93) BS14 CLA ? GO:0005737 ... A0A8F5GHI6 38071196
    44592 8j5k:D (2.93) BS02 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    44593 8j5k:D (2.93) BS05 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    44594 8j5k:D (2.93) BS06 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    44595 8j5k:D (2.93) BS08 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    44596 8j5k:D (2.93) BS09 CLA 1.10.3.9 GO:0005506 ... A0A679C012 38071196
    44597 8j5k:H (2.93) BS01 CLA ? GO:0009507 ... B7XBY7 38071196
    44598 8j5k:H (2.93) BS02 CLA ? GO:0009507 ... B7XBY7 38071196
    44599 8j5k:H (2.93) BS03 CLA ? GO:0009507 ... B7XBY7 38071196
    44600 8j5k:H (2.93) BS04 CLA ? GO:0009507 ... B7XBY7 38071196
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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