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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    44201 8iwh:8 (2.68) BS12 CLA ? GO:0009765 ... B8BX93 37878698
    44202 8iwh:8 (2.68) BS13 CLA ? GO:0009765 ... B8BX93 37878698
    44203 8iwh:8 (2.68) BS14 CLA ? GO:0009765 ... B8BX93 37878698
    44204 8iwh:8 (2.68) BS15 CLA ? GO:0009765 ... B8BX93 37878698
    44205 8iwh:8 (2.68) BS16 CLA ? GO:0009765 ... B8BX93 37878698
    44206 8iwh:9 (2.68) BS05 CLA ? GO:0009765 ... B8BX93 37878698
    44207 8iwh:9 (2.68) BS06 CLA ? GO:0009765 ... B8BX93 37878698
    44208 8iwh:9 (2.68) BS07 CLA ? GO:0009765 ... B8BX93 37878698
    44209 8iwh:9 (2.68) BS08 CLA ? GO:0009765 ... B8BX93 37878698
    44210 8iwh:9 (2.68) BS09 CLA ? GO:0009765 ... B8BX93 37878698
    44211 8iwh:9 (2.68) BS10 CLA ? GO:0009765 ... B8BX93 37878698
    44212 8iwh:9 (2.68) BS11 CLA ? GO:0009765 ... B8BX93 37878698
    44213 8iwh:9 (2.68) BS12 CLA ? GO:0009765 ... B8BX93 37878698
    44214 8iwh:9 (2.68) BS13 CLA ? GO:0009765 ... B8BX93 37878698
    44215 8iwh:9 (2.68) BS14 CLA ? GO:0009765 ... B8BX93 37878698
    44216 8iwh:9 (2.68) BS15 CLA ? GO:0009765 ... B8BX93 37878698
    44217 8iwh:9 (2.68) BS16 CLA ? GO:0009765 ... B8BX93 37878698
    44218 8iwh:9 (2.68) BS17 CLA ? GO:0009765 ... B8BX93 37878698
    44219 8iwh:9 (2.68) BS18 CLA ? GO:0009765 ... B8BX93 37878698
    44220 8iwh:A (2.68) BS02 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44221 8iwh:A (2.68) BS03 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44222 8iwh:A (2.68) BS06 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44223 8iwh:A (2.68) BS08 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44224 8iwh:B (2.68) BS01 CLA ? GO:0009507 ... A0T0P5 37878698
    44225 8iwh:B (2.68) BS02 CLA ? GO:0009507 ... A0T0P5 37878698
    44226 8iwh:B (2.68) BS03 CLA ? GO:0009507 ... A0T0P5 37878698
    44227 8iwh:B (2.68) BS04 CLA ? GO:0009507 ... A0T0P5 37878698
    44228 8iwh:B (2.68) BS05 CLA ? GO:0009507 ... A0T0P5 37878698
    44229 8iwh:B (2.68) BS06 CLA ? GO:0009507 ... A0T0P5 37878698
    44230 8iwh:B (2.68) BS07 CLA ? GO:0009507 ... A0T0P5 37878698
    44231 8iwh:B (2.68) BS08 CLA ? GO:0009507 ... A0T0P5 37878698
    44232 8iwh:B (2.68) BS09 CLA ? GO:0009507 ... A0T0P5 37878698
    44233 8iwh:B (2.68) BS10 CLA ? GO:0009507 ... A0T0P5 37878698
    44234 8iwh:B (2.68) BS11 CLA ? GO:0009507 ... A0T0P5 37878698
    44235 8iwh:B (2.68) BS12 CLA ? GO:0009507 ... A0T0P5 37878698
    44236 8iwh:B (2.68) BS13 CLA ? GO:0009507 ... A0T0P5 37878698
    44237 8iwh:B (2.68) BS14 CLA ? GO:0009507 ... A0T0P5 37878698
    44238 8iwh:B (2.68) BS15 CLA ? GO:0009507 ... A0T0P5 37878698
    44239 8iwh:C (2.68) BS02 CLA ? GO:0005737 ... A0T0T1 37878698
    44240 8iwh:C (2.68) BS03 CLA ? GO:0005737 ... A0T0T1 37878698
    44241 8iwh:C (2.68) BS04 CLA ? GO:0005737 ... A0T0T1 37878698
    44242 8iwh:C (2.68) BS05 CLA ? GO:0005737 ... A0T0T1 37878698
    44243 8iwh:C (2.68) BS06 CLA ? GO:0005737 ... A0T0T1 37878698
    44244 8iwh:C (2.68) BS07 CLA ? GO:0005737 ... A0T0T1 37878698
    44245 8iwh:C (2.68) BS08 CLA ? GO:0005737 ... A0T0T1 37878698
    44246 8iwh:C (2.68) BS09 CLA ? GO:0005737 ... A0T0T1 37878698
    44247 8iwh:C (2.68) BS10 CLA ? GO:0005737 ... A0T0T1 37878698
    44248 8iwh:C (2.68) BS11 CLA ? GO:0005737 ... A0T0T1 37878698
    44249 8iwh:C (2.68) BS12 CLA ? GO:0005737 ... A0T0T1 37878698
    44250 8iwh:C (2.68) BS13 CLA ? GO:0005737 ... A0T0T1 37878698
    44251 8iwh:C (2.68) BS14 CLA ? GO:0005737 ... A0T0T1 37878698
    44252 8iwh:D (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44253 8iwh:D (2.68) BS06 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44254 8iwh:D (2.68) BS07 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44255 8iwh:D (2.68) BS08 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44256 8iwh:H (2.68) BS01 CLA ? GO:0009507 ... A0T0P8 37878698
    44257 8iwh:H (2.68) BS02 CLA ? GO:0009507 ... A0T0P8 37878698
    44258 8iwh:K (2.68) BS01 CLA ? GO:0005737 ... A0T0S8 37878698
    44259 8iwh:K (2.68) BS02 CLA ? GO:0005737 ... A0T0S8 37878698
    44260 8iwh:W (2.68) BS01 CLA ? N/A B8C8Y3 37878698
    44261 8iwh:Z (2.68) BS01 CLA ? GO:0009523 ... A0T0T3 37878698
    44262 8iwh:a (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44263 8iwh:a (2.68) BS04 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44264 8iwh:a (2.68) BS07 CLA 1.10.3.9 GO:0005506 ... A0T0W2 37878698
    44265 8iwh:b (2.68) BS01 CLA ? GO:0009507 ... A0T0P5 37878698
    44266 8iwh:b (2.68) BS02 CLA ? GO:0009507 ... A0T0P5 37878698
    44267 8iwh:b (2.68) BS03 CLA ? GO:0009507 ... A0T0P5 37878698
    44268 8iwh:b (2.68) BS04 CLA ? GO:0009507 ... A0T0P5 37878698
    44269 8iwh:b (2.68) BS05 CLA ? GO:0009507 ... A0T0P5 37878698
    44270 8iwh:b (2.68) BS06 CLA ? GO:0009507 ... A0T0P5 37878698
    44271 8iwh:b (2.68) BS07 CLA ? GO:0009507 ... A0T0P5 37878698
    44272 8iwh:b (2.68) BS08 CLA ? GO:0009507 ... A0T0P5 37878698
    44273 8iwh:b (2.68) BS09 CLA ? GO:0009507 ... A0T0P5 37878698
    44274 8iwh:b (2.68) BS10 CLA ? GO:0009507 ... A0T0P5 37878698
    44275 8iwh:b (2.68) BS11 CLA ? GO:0009507 ... A0T0P5 37878698
    44276 8iwh:b (2.68) BS12 CLA ? GO:0009507 ... A0T0P5 37878698
    44277 8iwh:b (2.68) BS13 CLA ? GO:0009507 ... A0T0P5 37878698
    44278 8iwh:b (2.68) BS14 CLA ? GO:0009507 ... A0T0P5 37878698
    44279 8iwh:b (2.68) BS15 CLA ? GO:0009507 ... A0T0P5 37878698
    44280 8iwh:c (2.68) BS01 CLA ? GO:0005737 ... A0T0T1 37878698
    44281 8iwh:c (2.68) BS02 CLA ? GO:0005737 ... A0T0T1 37878698
    44282 8iwh:c (2.68) BS03 CLA ? GO:0005737 ... A0T0T1 37878698
    44283 8iwh:c (2.68) BS04 CLA ? GO:0005737 ... A0T0T1 37878698
    44284 8iwh:c (2.68) BS05 CLA ? GO:0005737 ... A0T0T1 37878698
    44285 8iwh:c (2.68) BS06 CLA ? GO:0005737 ... A0T0T1 37878698
    44286 8iwh:c (2.68) BS07 CLA ? GO:0005737 ... A0T0T1 37878698
    44287 8iwh:c (2.68) BS08 CLA ? GO:0005737 ... A0T0T1 37878698
    44288 8iwh:c (2.68) BS09 CLA ? GO:0005737 ... A0T0T1 37878698
    44289 8iwh:c (2.68) BS10 CLA ? GO:0005737 ... A0T0T1 37878698
    44290 8iwh:c (2.68) BS11 CLA ? GO:0005737 ... A0T0T1 37878698
    44291 8iwh:c (2.68) BS12 CLA ? GO:0005737 ... A0T0T1 37878698
    44292 8iwh:c (2.68) BS13 CLA ? GO:0005737 ... A0T0T1 37878698
    44293 8iwh:d (2.68) BS01 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44294 8iwh:d (2.68) BS02 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44295 8iwh:d (2.68) BS04 CLA 1.10.3.9 GO:0005506 ... A0T0T0 37878698
    44296 8iwh:h (2.68) BS01 CLA ? GO:0009507 ... A0T0P8 37878698
    44297 8iwh:h (2.68) BS02 CLA ? GO:0009507 ... A0T0P8 37878698
    44298 8iwh:k (2.68) BS01 CLA ? GO:0005737 ... A0T0S8 37878698
    44299 8iwh:k (2.68) BS02 CLA ? GO:0005737 ... A0T0S8 37878698
    44300 8iwh:w (2.68) BS01 CLA ? N/A B8C8Y3 37878698
    44301 8iwx:G (2.59) BS02 CLA ? GO:0009765 ... P12333 37653340
    44302 8iwx:G (2.59) BS03 CLA ? GO:0009765 ... P12333 37653340
    44303 8iwx:G (2.59) BS09 CLA ? GO:0009765 ... P12333 37653340
    44304 8iwx:G (2.59) BS10 CLA ? GO:0009765 ... P12333 37653340
    44305 8iwx:G (2.59) BS11 CLA ? GO:0009765 ... P12333 37653340
    44306 8iwx:G (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    44307 8iwx:G (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    44308 8iwx:N (2.59) BS02 CLA ? GO:0009765 ... P12333 37653340
    44309 8iwx:N (2.59) BS03 CLA ? GO:0009765 ... P12333 37653340
    44310 8iwx:N (2.59) BS04 CLA ? GO:0009765 ... P12333 37653340
    44311 8iwx:N (2.59) BS10 CLA ? GO:0009765 ... P12333 37653340
    44312 8iwx:N (2.59) BS11 CLA ? GO:0009765 ... P12333 37653340
    44313 8iwx:N (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    44314 8iwx:N (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    44315 8iwx:N (2.59) BS14 CLA ? GO:0009765 ... P12333 37653340
    44316 8iwx:N (2.59) BS17 CLA ? GO:0009765 ... P12333 37653340
    44317 8iwx:Y (2.59) BS04 CLA ? GO:0009765 ... P12333 37653340
    44318 8iwx:Y (2.59) BS05 CLA ? GO:0009765 ... P12333 37653340
    44319 8iwx:Y (2.59) BS06 CLA ? GO:0009765 ... P12333 37653340
    44320 8iwx:Y (2.59) BS12 CLA ? GO:0009765 ... P12333 37653340
    44321 8iwx:Y (2.59) BS13 CLA ? GO:0009765 ... P12333 37653340
    44322 8iwx:Y (2.59) BS14 CLA ? GO:0009765 ... P12333 37653340
    44323 8iwx:Y (2.59) BS15 CLA ? GO:0009765 ... P12333 37653340
    44324 8iwx:Y (2.59) BS16 CLA ? GO:0009765 ... P12333 37653340
    44325 8iwy:G (2.68) BS02 CLA ? GO:0009765 ... P12333 37653340
    44326 8iwy:G (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    44327 8iwy:G (2.68) BS09 CLA ? GO:0009765 ... P12333 37653340
    44328 8iwy:G (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    44329 8iwy:G (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    44330 8iwy:G (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    44331 8iwy:G (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    44332 8iwy:N (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    44333 8iwy:N (2.68) BS04 CLA ? GO:0009765 ... P12333 37653340
    44334 8iwy:N (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    44335 8iwy:N (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    44336 8iwy:N (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    44337 8iwy:N (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    44338 8iwy:N (2.68) BS14 CLA ? GO:0009765 ... P12333 37653340
    44339 8iwy:Y (2.68) BS02 CLA ? GO:0009765 ... P12333 37653340
    44340 8iwy:Y (2.68) BS03 CLA ? GO:0009765 ... P12333 37653340
    44341 8iwy:Y (2.68) BS04 CLA ? GO:0009765 ... P12333 37653340
    44342 8iwy:Y (2.68) BS10 CLA ? GO:0009765 ... P12333 37653340
    44343 8iwy:Y (2.68) BS11 CLA ? GO:0009765 ... P12333 37653340
    44344 8iwy:Y (2.68) BS12 CLA ? GO:0009765 ... P12333 37653340
    44345 8iwy:Y (2.68) BS13 CLA ? GO:0009765 ... P12333 37653340
    44346 8iwy:Y (2.68) BS14 CLA ? GO:0009765 ... P12333 37653340
    44347 8iwz:G (2.52) BS02 CLA ? GO:0009765 ... P12333 37653340
    44348 8iwz:G (2.52) BS03 CLA ? GO:0009765 ... P12333 37653340
    44349 8iwz:G (2.52) BS09 CLA ? GO:0009765 ... P12333 37653340
    44350 8iwz:G (2.52) BS10 CLA ? GO:0009765 ... P12333 37653340
    44351 8iwz:G (2.52) BS11 CLA ? GO:0009765 ... P12333 37653340
    44352 8iwz:G (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    44353 8iwz:G (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    44354 8iwz:N (2.52) BS02 CLA ? GO:0009765 ... P12333 37653340
    44355 8iwz:N (2.52) BS03 CLA ? GO:0009765 ... P12333 37653340
    44356 8iwz:N (2.52) BS09 CLA ? GO:0009765 ... P12333 37653340
    44357 8iwz:N (2.52) BS10 CLA ? GO:0009765 ... P12333 37653340
    44358 8iwz:N (2.52) BS11 CLA ? GO:0009765 ... P12333 37653340
    44359 8iwz:N (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    44360 8iwz:N (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    44361 8iwz:Y (2.52) BS04 CLA ? GO:0009765 ... P12333 37653340
    44362 8iwz:Y (2.52) BS05 CLA ? GO:0009765 ... P12333 37653340
    44363 8iwz:Y (2.52) BS06 CLA ? GO:0009765 ... P12333 37653340
    44364 8iwz:Y (2.52) BS12 CLA ? GO:0009765 ... P12333 37653340
    44365 8iwz:Y (2.52) BS13 CLA ? GO:0009765 ... P12333 37653340
    44366 8iwz:Y (2.52) BS14 CLA ? GO:0009765 ... P12333 37653340
    44367 8iwz:Y (2.52) BS15 CLA ? GO:0009765 ... P12333 37653340
    44368 8iwz:Y (2.52) BS16 CLA ? GO:0009765 ... P12333 37653340
    44369 8ix0:G (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    44370 8ix0:G (2.64) BS06 CLA ? GO:0009765 ... P12333 37653340
    44371 8ix0:G (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    44372 8ix0:N (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    44373 8ix0:N (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    44374 8ix0:N (2.64) BS08 CLA ? GO:0009765 ... P12333 37653340
    44375 8ix0:Y (2.64) BS02 CLA ? GO:0009765 ... P12333 37653340
    44376 8ix0:Y (2.64) BS03 CLA ? GO:0009765 ... P12333 37653340
    44377 8ix0:Y (2.64) BS07 CLA ? GO:0009765 ... P12333 37653340
    44378 8ix0:Y (2.64) BS08 CLA ? GO:0009765 ... P12333 37653340
    44379 8ix0:Y (2.64) BS09 CLA ? GO:0009765 ... P12333 37653340
    44380 8ix1:G (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    44381 8ix1:G (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    44382 8ix1:G (2.63) BS08 CLA ? GO:0009765 ... P12333 37653340
    44383 8ix1:G (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    44384 8ix1:G (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    44385 8ix1:G (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    44386 8ix1:G (2.63) BS12 CLA ? GO:0009765 ... P12333 37653340
    44387 8ix1:N (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    44388 8ix1:N (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    44389 8ix1:N (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    44390 8ix1:N (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    44391 8ix1:N (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    44392 8ix1:N (2.63) BS12 CLA ? GO:0009765 ... P12333 37653340
    44393 8ix1:N (2.63) BS13 CLA ? GO:0009765 ... P12333 37653340
    44394 8ix1:Y (2.63) BS02 CLA ? GO:0009765 ... P12333 37653340
    44395 8ix1:Y (2.63) BS03 CLA ? GO:0009765 ... P12333 37653340
    44396 8ix1:Y (2.63) BS08 CLA ? GO:0009765 ... P12333 37653340
    44397 8ix1:Y (2.63) BS09 CLA ? GO:0009765 ... P12333 37653340
    44398 8ix1:Y (2.63) BS10 CLA ? GO:0009765 ... P12333 37653340
    44399 8ix1:Y (2.63) BS11 CLA ? GO:0009765 ... P12333 37653340
    44400 8ix2:G (2.8) BS01 CLA ? GO:0009765 ... P12333 37653340
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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