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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43601 8ird:C (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43602 8ird:C (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43603 8ird:C (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43604 8ird:C (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43605 8ird:C (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43606 8ird:C (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43607 8ird:C (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43608 8ird:C (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43609 8ird:C (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43610 8ird:C (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43611 8ird:C (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43612 8ird:C (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43613 8ird:C (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43614 8ird:D (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43615 8ird:D (2.3) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43616 8ird:D (2.3) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43617 8ird:D (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43618 8ird:D (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43619 8ird:H (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    43620 8ird:H (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    43621 8ird:H (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    43622 8ird:I (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    43623 8ird:K (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    43624 8ird:K (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    43625 8ird:a (2.3) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43626 8ird:a (2.3) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43627 8ird:a (2.3) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43628 8ird:a (2.3) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43629 8ird:b (2.3) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43630 8ird:b (2.3) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43631 8ird:b (2.3) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43632 8ird:b (2.3) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43633 8ird:b (2.3) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43634 8ird:b (2.3) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43635 8ird:b (2.3) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43636 8ird:b (2.3) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43637 8ird:b (2.3) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43638 8ird:b (2.3) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43639 8ird:b (2.3) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43640 8ird:b (2.3) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43641 8ird:b (2.3) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43642 8ird:b (2.3) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43643 8ird:b (2.3) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43644 8ird:c (2.3) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43645 8ird:c (2.3) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43646 8ird:c (2.3) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43647 8ird:c (2.3) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43648 8ird:c (2.3) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43649 8ird:c (2.3) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43650 8ird:c (2.3) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43651 8ird:c (2.3) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43652 8ird:c (2.3) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43653 8ird:c (2.3) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43654 8ird:c (2.3) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43655 8ird:c (2.3) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43656 8ird:c (2.3) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43657 8ird:d (2.3) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43658 8ird:d (2.3) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43659 8ird:d (2.3) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43660 8ird:d (2.3) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43661 8ird:d (2.3) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43662 8ird:h (2.3) BS01 CLA ? GO:0009523 ... P19052 38297122
    43663 8ird:h (2.3) BS02 CLA ? GO:0009523 ... P19052 38297122
    43664 8ird:h (2.3) BS03 CLA ? GO:0009523 ... P19052 38297122
    43665 8ird:i (2.3) BS01 CLA ? GO:0005737 ... P12240 38297122
    43666 8ird:k (2.3) BS02 CLA ? GO:0005737 ... P19054 38297122
    43667 8ird:k (2.3) BS03 CLA ? GO:0005737 ... P19054 38297122
    43668 8ird:x (2.3) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43669 8ire:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43670 8ire:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43671 8ire:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43672 8ire:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43673 8ire:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43674 8ire:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43675 8ire:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43676 8ire:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43677 8ire:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43678 8ire:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43679 8ire:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43680 8ire:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43681 8ire:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43682 8ire:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43683 8ire:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43684 8ire:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43685 8ire:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43686 8ire:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43687 8ire:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43688 8ire:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43689 8ire:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43690 8ire:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43691 8ire:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43692 8ire:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43693 8ire:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43694 8ire:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43695 8ire:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43696 8ire:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43697 8ire:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43698 8ire:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43699 8ire:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43700 8ire:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43701 8ire:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43702 8ire:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43703 8ire:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43704 8ire:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43705 8ire:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43706 8ire:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43707 8ire:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43708 8ire:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43709 8ire:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43710 8ire:H (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    43711 8ire:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43712 8ire:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43713 8ire:K (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43714 8ire:a (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43715 8ire:a (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43716 8ire:a (2.25) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43717 8ire:a (2.25) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43718 8ire:b (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43719 8ire:b (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43720 8ire:b (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43721 8ire:b (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43722 8ire:b (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43723 8ire:b (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43724 8ire:b (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43725 8ire:b (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43726 8ire:b (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43727 8ire:b (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43728 8ire:b (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43729 8ire:b (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43730 8ire:b (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43731 8ire:b (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43732 8ire:b (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43733 8ire:c (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43734 8ire:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43735 8ire:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43736 8ire:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43737 8ire:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43738 8ire:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43739 8ire:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43740 8ire:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43741 8ire:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43742 8ire:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43743 8ire:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43744 8ire:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43745 8ire:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43746 8ire:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43747 8ire:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43748 8ire:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43749 8ire:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43750 8ire:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43751 8ire:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43752 8ire:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43753 8ire:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43754 8ire:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43755 8ire:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43756 8ire:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43757 8ire:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43758 8irf:A (2.25) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43759 8irf:A (2.25) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43760 8irf:A (2.25) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43761 8irf:A (2.25) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43762 8irf:B (2.25) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43763 8irf:B (2.25) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43764 8irf:B (2.25) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43765 8irf:B (2.25) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43766 8irf:B (2.25) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43767 8irf:B (2.25) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43768 8irf:B (2.25) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43769 8irf:B (2.25) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43770 8irf:B (2.25) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43771 8irf:B (2.25) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43772 8irf:B (2.25) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43773 8irf:B (2.25) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43774 8irf:B (2.25) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43775 8irf:B (2.25) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43776 8irf:B (2.25) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43777 8irf:B (2.25) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43778 8irf:C (2.25) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43779 8irf:C (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43780 8irf:C (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43781 8irf:C (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43782 8irf:C (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43783 8irf:C (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43784 8irf:C (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43785 8irf:C (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43786 8irf:C (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43787 8irf:C (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43788 8irf:C (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43789 8irf:C (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43790 8irf:C (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43791 8irf:D (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43792 8irf:D (2.25) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43793 8irf:D (2.25) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43794 8irf:D (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43795 8irf:D (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43796 8irf:H (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43797 8irf:H (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43798 8irf:H (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43799 8irf:I (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43800 8irf:K (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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