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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 49284 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    43201 8ir8:c (2.25) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43202 8ir8:c (2.25) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43203 8ir8:c (2.25) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43204 8ir8:c (2.25) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43205 8ir8:c (2.25) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43206 8ir8:c (2.25) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43207 8ir8:c (2.25) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43208 8ir8:c (2.25) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43209 8ir8:c (2.25) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43210 8ir8:c (2.25) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43211 8ir8:c (2.25) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43212 8ir8:c (2.25) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43213 8ir8:d (2.25) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43214 8ir8:d (2.25) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43215 8ir8:d (2.25) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43216 8ir8:d (2.25) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43217 8ir8:d (2.25) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43218 8ir8:h (2.25) BS01 CLA ? GO:0009523 ... P19052 38297122
    43219 8ir8:h (2.25) BS02 CLA ? GO:0009523 ... P19052 38297122
    43220 8ir8:h (2.25) BS03 CLA ? GO:0009523 ... P19052 38297122
    43221 8ir8:h (2.25) BS04 CLA ? GO:0009523 ... P19052 38297122
    43222 8ir8:i (2.25) BS01 CLA ? GO:0005737 ... P12240 38297122
    43223 8ir8:k (2.25) BS02 CLA ? GO:0005737 ... P19054 38297122
    43224 8ir8:k (2.25) BS03 CLA ? GO:0005737 ... P19054 38297122
    43225 8ir8:x (2.25) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43226 8ir9:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43227 8ir9:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43228 8ir9:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43229 8ir9:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43230 8ir9:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43231 8ir9:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43232 8ir9:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43233 8ir9:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43234 8ir9:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43235 8ir9:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43236 8ir9:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43237 8ir9:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43238 8ir9:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43239 8ir9:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43240 8ir9:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43241 8ir9:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43242 8ir9:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43243 8ir9:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43244 8ir9:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43245 8ir9:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43246 8ir9:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43247 8ir9:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43248 8ir9:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43249 8ir9:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43250 8ir9:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43251 8ir9:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43252 8ir9:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43253 8ir9:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43254 8ir9:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43255 8ir9:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43256 8ir9:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43257 8ir9:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43258 8ir9:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43259 8ir9:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43260 8ir9:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43261 8ir9:D (2.2) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43262 8ir9:D (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43263 8ir9:D (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43264 8ir9:H (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    43265 8ir9:H (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    43266 8ir9:H (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    43267 8ir9:I (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    43268 8ir9:K (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    43269 8ir9:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43270 8ir9:a (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43271 8ir9:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43272 8ir9:a (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43273 8ir9:a (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43274 8ir9:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43275 8ir9:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43276 8ir9:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43277 8ir9:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43278 8ir9:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43279 8ir9:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43280 8ir9:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43281 8ir9:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43282 8ir9:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43283 8ir9:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43284 8ir9:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43285 8ir9:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43286 8ir9:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43287 8ir9:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43288 8ir9:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43289 8ir9:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43290 8ir9:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43291 8ir9:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43292 8ir9:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43293 8ir9:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43294 8ir9:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43295 8ir9:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43296 8ir9:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43297 8ir9:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43298 8ir9:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43299 8ir9:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43300 8ir9:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43301 8ir9:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43302 8ir9:d (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43303 8ir9:d (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43304 8ir9:d (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43305 8ir9:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43306 8ir9:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43307 8ir9:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    43308 8ir9:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    43309 8ir9:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    43310 8ir9:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    43311 8ir9:i (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    43312 8ir9:k (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    43313 8ir9:k (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43314 8ira:A (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43315 8ira:A (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43316 8ira:A (2.2) BS04 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43317 8ira:A (2.2) BS06 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43318 8ira:B (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43319 8ira:B (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43320 8ira:B (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43321 8ira:B (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43322 8ira:B (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43323 8ira:B (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43324 8ira:B (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43325 8ira:B (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43326 8ira:B (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43327 8ira:B (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43328 8ira:B (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43329 8ira:B (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43330 8ira:B (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43331 8ira:B (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43332 8ira:B (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43333 8ira:B (2.2) BS16 CLA ? GO:0009521 ... D0VWR1 38297122
    43334 8ira:C (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43335 8ira:C (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43336 8ira:C (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43337 8ira:C (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43338 8ira:C (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43339 8ira:C (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43340 8ira:C (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43341 8ira:C (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43342 8ira:C (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43343 8ira:C (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43344 8ira:C (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43345 8ira:C (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43346 8ira:C (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43347 8ira:D (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43348 8ira:D (2.2) BS03 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43349 8ira:D (2.2) BS06 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43350 8ira:D (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43351 8ira:D (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43352 8ira:H (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    43353 8ira:H (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    43354 8ira:H (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    43355 8ira:H (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    43356 8ira:I (2.2) BS01 CLA ? GO:0005737 ... P12240 38297122
    43357 8ira:K (2.2) BS02 CLA ? GO:0005737 ... P19054 38297122
    43358 8ira:K (2.2) BS03 CLA ? GO:0005737 ... P19054 38297122
    43359 8ira:X (2.2) BS01 CLA ? GO:0009523 ... D0VWR4 38297122
    43360 8ira:a (2.2) BS02 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43361 8ira:a (2.2) BS03 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43362 8ira:a (2.2) BS05 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43363 8ira:a (2.2) BS09 CLA 1.10.3.9 GO:0005506 ... P51765 38297122
    43364 8ira:b (2.2) BS01 CLA ? GO:0009521 ... D0VWR1 38297122
    43365 8ira:b (2.2) BS02 CLA ? GO:0009521 ... D0VWR1 38297122
    43366 8ira:b (2.2) BS03 CLA ? GO:0009521 ... D0VWR1 38297122
    43367 8ira:b (2.2) BS04 CLA ? GO:0009521 ... D0VWR1 38297122
    43368 8ira:b (2.2) BS05 CLA ? GO:0009521 ... D0VWR1 38297122
    43369 8ira:b (2.2) BS06 CLA ? GO:0009521 ... D0VWR1 38297122
    43370 8ira:b (2.2) BS07 CLA ? GO:0009521 ... D0VWR1 38297122
    43371 8ira:b (2.2) BS08 CLA ? GO:0009521 ... D0VWR1 38297122
    43372 8ira:b (2.2) BS09 CLA ? GO:0009521 ... D0VWR1 38297122
    43373 8ira:b (2.2) BS10 CLA ? GO:0009521 ... D0VWR1 38297122
    43374 8ira:b (2.2) BS11 CLA ? GO:0009521 ... D0VWR1 38297122
    43375 8ira:b (2.2) BS12 CLA ? GO:0009521 ... D0VWR1 38297122
    43376 8ira:b (2.2) BS13 CLA ? GO:0009521 ... D0VWR1 38297122
    43377 8ira:b (2.2) BS14 CLA ? GO:0009521 ... D0VWR1 38297122
    43378 8ira:b (2.2) BS15 CLA ? GO:0009521 ... D0VWR1 38297122
    43379 8ira:c (2.2) BS02 CLA ? GO:0005737 ... D0VWR7 38297122
    43380 8ira:c (2.2) BS03 CLA ? GO:0005737 ... D0VWR7 38297122
    43381 8ira:c (2.2) BS04 CLA ? GO:0005737 ... D0VWR7 38297122
    43382 8ira:c (2.2) BS05 CLA ? GO:0005737 ... D0VWR7 38297122
    43383 8ira:c (2.2) BS06 CLA ? GO:0005737 ... D0VWR7 38297122
    43384 8ira:c (2.2) BS07 CLA ? GO:0005737 ... D0VWR7 38297122
    43385 8ira:c (2.2) BS08 CLA ? GO:0005737 ... D0VWR7 38297122
    43386 8ira:c (2.2) BS09 CLA ? GO:0005737 ... D0VWR7 38297122
    43387 8ira:c (2.2) BS10 CLA ? GO:0005737 ... D0VWR7 38297122
    43388 8ira:c (2.2) BS11 CLA ? GO:0005737 ... D0VWR7 38297122
    43389 8ira:c (2.2) BS12 CLA ? GO:0005737 ... D0VWR7 38297122
    43390 8ira:c (2.2) BS13 CLA ? GO:0005737 ... D0VWR7 38297122
    43391 8ira:c (2.2) BS14 CLA ? GO:0005737 ... D0VWR7 38297122
    43392 8ira:d (2.2) BS02 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43393 8ira:d (2.2) BS05 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43394 8ira:d (2.2) BS07 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43395 8ira:d (2.2) BS08 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43396 8ira:d (2.2) BS09 CLA 1.10.3.9 GO:0009523 ... D0VWR8 38297122
    43397 8ira:h (2.2) BS01 CLA ? GO:0009523 ... P19052 38297122
    43398 8ira:h (2.2) BS02 CLA ? GO:0009523 ... P19052 38297122
    43399 8ira:h (2.2) BS03 CLA ? GO:0009523 ... P19052 38297122
    43400 8ira:h (2.2) BS04 CLA ? GO:0009523 ... P19052 38297122
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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